data_4XE5 # _model_server_result.job_id z7FAJ-HIf8lQSJh9Ww828Q _model_server_result.datetime_utc '2024-11-13 15:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xe5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1104}' # _entry.id 4XE5 # _exptl.entry_id 4XE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.652 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OUABAIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XE5 _cell.length_a 64.75 _cell.length_b 301.07 _cell.length_c 242.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C SER 373 A SER 373 1_555 A N BFD 374 A BFD 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C BFD 374 A BFD 374 1_555 A N LYS 375 A LYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD2 BFD 374 A BFD 374 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A O THR 376 A THR 376 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A OD1 ASP 715 A ASP 715 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc4 A OD1 ASP 745 A ASP 745 1_555 E MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A OD2 ASP 745 A ASP 745 1_555 E MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 A OD1 ASN 781 A ASN 781 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 A OE2 GLU 784 A GLU 784 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc8 A OD1 ASP 809 A ASP 809 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 A OD2 ASP 809 A ASP 809 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc10 D MG MG . A MG 1101 1_555 J O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc11 D MG MG . A MG 1101 1_555 J O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc14 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C29 H44 O12' _chem_comp.formula_weight 584.652 _chem_comp.id OBN _chem_comp.mon_nstd_flag . _chem_comp.name OUABAIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OBN sing 332 n n C1 C10 OBN sing 333 n n C1 O1 OBN sing 334 n n C1 H1 OBN sing 335 n n C2 C3 OBN sing 336 n n C2 H21 OBN sing 337 n n C2 H22A OBN sing 338 n n C3 C4 OBN sing 339 n n C3 O3 OBN sing 340 n n C3 H3 OBN sing 341 n n C4 C5 OBN sing 342 n n C4 H41 OBN sing 343 n n C4 H42 OBN sing 344 n n C5 C6 OBN sing 345 n n C5 C10 OBN sing 346 n n C5 O5 OBN sing 347 n n C6 C7 OBN sing 348 n n C6 H61 OBN sing 349 n n C6 H62 OBN sing 350 n n C7 C8 OBN sing 351 n n C7 H71 OBN sing 352 n n C7 H72 OBN sing 353 n n C8 C9 OBN sing 354 n n C8 C14 OBN sing 355 n n C8 H8 OBN sing 356 n n C9 C10 OBN sing 357 n n C9 C11 OBN sing 358 n n C9 H9 OBN sing 359 n n C10 C19 OBN sing 360 n n C11 C12 OBN sing 361 n n C11 O11 OBN sing 362 n n C11 H11 OBN sing 363 n n C12 C13 OBN sing 364 n n C12 H121 OBN sing 365 n n C12 H122 OBN sing 366 n n C13 C14 OBN sing 367 n n C13 C17 OBN sing 368 n n C13 C18 OBN sing 369 n n C14 C15 OBN sing 370 n n C14 O14 OBN sing 371 n n C15 C16 OBN sing 372 n n C15 H151 OBN sing 373 n n C15 H152 OBN sing 374 n n C16 C17 OBN sing 375 n n C16 H161 OBN sing 376 n n C16 H162 OBN sing 377 n n C17 C20 OBN sing 378 n n C17 H17 OBN sing 379 n n C18 H181 OBN sing 380 n n C18 H182 OBN sing 381 n n C18 H183 OBN sing 382 n n C19 O19 OBN sing 383 n n C19 H191 OBN sing 384 n n C19 H192 OBN sing 385 n n C20 C21 OBN sing 386 n n C20 C22 OBN doub 387 n n C21 O21 OBN sing 388 n n C21 H211 OBN sing 389 n n C21 H212 OBN sing 390 n n C22 C23 OBN sing 391 n n C22 H22 OBN sing 392 n n C23 O21 OBN sing 393 n n C23 O23 OBN doub 394 n n C1' C2' OBN sing 395 n n C1' O3 OBN sing 396 n n C1' O5' OBN sing 397 n n C1' H1' OBN sing 398 n n C2' C3' OBN sing 399 n n C2' O2' OBN sing 400 n n C2' H2' OBN sing 401 n n C3' C4' OBN sing 402 n n C3' O3' OBN sing 403 n n C3' H3' OBN sing 404 n n C4' C5' OBN sing 405 n n C4' O4' OBN sing 406 n n C4' H4' OBN sing 407 n n C5' C6' OBN sing 408 n n C5' O5' OBN sing 409 n n C5' H5' OBN sing 410 n n C6' "H6'1" OBN sing 411 n n C6' "H6'2" OBN sing 412 n n C6' "H6'3" OBN sing 413 n n O1 HO1 OBN sing 414 n n O5 HO5 OBN sing 415 n n O11 HOE OBN sing 416 n n O14 HOF OBN sing 417 n n O19 HON OBN sing 418 n n O2' HO2' OBN sing 419 n n O3' HO3' OBN sing 420 n n O4' HO4' OBN sing 421 n n # _atom_sites.entry_id 4XE5 _atom_sites.fract_transf_matrix[1][1] 0.015444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1101 1101 MG MG . E 4 MG A 1 1102 1102 MG MG . F 4 MG A 1 1103 1103 MG MG . G 5 OBN A 1 1104 1104 OBN OBN . H 6 CLR A 1 1105 1105 CLR CLR . I 6 CLR A 1 1106 1106 CLR CLR . J 7 HOH A 1 1201 1201 HOH HOH . J 7 HOH A 2 1202 1202 HOH HOH . J 7 HOH A 3 1203 1205 HOH HOH . J 7 HOH A 4 1204 1204 HOH HOH . J 7 HOH A 5 1205 1203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OBN . . . G 5 -25.732 7.287 -37.163 1 93.57 ? C1 OBN 1104 A 1 HETATM 2 C C2 OBN . . . G 5 -27.198 7.711 -37.005 1 92.12 ? C2 OBN 1104 A 1 HETATM 3 C C3 OBN . . . G 5 -27.336 8.945 -36.165 1 93 ? C3 OBN 1104 A 1 HETATM 4 C C4 OBN . . . G 5 -26.667 8.76 -34.818 1 93.52 ? C4 OBN 1104 A 1 HETATM 5 C C5 OBN . . . G 5 -25.191 8.275 -34.933 1 94.58 ? C5 OBN 1104 A 1 HETATM 6 C C6 OBN . . . G 5 -24.555 8.06 -33.548 1 95.02 ? C6 OBN 1104 A 1 HETATM 7 C C7 OBN . . . G 5 -24.942 6.749 -32.888 1 91.59 ? C7 OBN 1104 A 1 HETATM 8 C C8 OBN . . . G 5 -24.593 5.566 -33.78 1 90.33 ? C8 OBN 1104 A 1 HETATM 9 C C9 OBN . . . G 5 -25.408 5.69 -35.078 1 92.88 ? C9 OBN 1104 A 1 HETATM 10 C C10 OBN . . . G 5 -24.979 7 -35.825 1 93.06 ? C10 OBN 1104 A 1 HETATM 11 C C11 OBN . . . G 5 -25.113 4.395 -35.903 1 93.7 ? C11 OBN 1104 A 1 HETATM 12 C C12 OBN . . . G 5 -25.347 3.115 -35.109 1 94.11 ? C12 OBN 1104 A 1 HETATM 13 C C13 OBN . . . G 5 -24.551 2.973 -33.829 1 89.44 ? C13 OBN 1104 A 1 HETATM 14 C C14 OBN . . . G 5 -24.774 4.261 -32.986 1 89.14 ? C14 OBN 1104 A 1 HETATM 15 C C15 OBN . . . G 5 -26.176 4.037 -32.401 1 89.46 ? C15 OBN 1104 A 1 HETATM 16 C C16 OBN . . . G 5 -26.325 2.529 -32.198 1 88.88 ? C16 OBN 1104 A 1 HETATM 17 C C17 OBN . . . G 5 -25.279 1.818 -33.079 1 86.97 ? C17 OBN 1104 A 1 HETATM 18 C C18 OBN . . . G 5 -23.101 2.63 -34.112 1 89.83 ? C18 OBN 1104 A 1 HETATM 19 C C19 OBN . . . G 5 -23.459 6.801 -36.168 1 90.63 ? C19 OBN 1104 A 1 HETATM 20 C C20 OBN . . . G 5 -24.443 0.854 -32.305 1 88.64 ? C20 OBN 1104 A 1 HETATM 21 C C21 OBN . . . G 5 -24.023 1.167 -30.887 1 92.01 ? C21 OBN 1104 A 1 HETATM 22 C C22 OBN . . . G 5 -24.127 -0.427 -32.557 1 89.33 ? C22 OBN 1104 A 1 HETATM 23 C C23 OBN . . . G 5 -23.352 -0.937 -31.387 1 90.15 ? C23 OBN 1104 A 1 HETATM 24 C C1' OBN . . . G 5 -27.18 11.289 -36.627 1 90.67 ? C1' OBN 1104 A 1 HETATM 25 C C2' OBN . . . G 5 -27.078 12.024 -37.986 1 91.47 ? C2' OBN 1104 A 1 HETATM 26 C C3' OBN . . . G 5 -28.218 11.612 -38.908 1 95.42 ? C3' OBN 1104 A 1 HETATM 27 C C4' OBN . . . G 5 -29.531 12.062 -38.256 1 94.96 ? C4' OBN 1104 A 1 HETATM 28 C C5' OBN . . . G 5 -29.692 11.462 -36.813 1 91.45 ? C5' OBN 1104 A 1 HETATM 29 C C6' OBN . . . G 5 -30.4 12.515 -35.943 1 91.71 ? C6' OBN 1104 A 1 HETATM 30 O O1 OBN . . . G 5 -25.035 8.348 -37.76 1 97.06 ? O1 OBN 1104 A 1 HETATM 31 O O3 OBN . . . G 5 -26.622 10.008 -36.794 1 92.99 ? O3 OBN 1104 A 1 HETATM 32 O O5 OBN . . . G 5 -24.486 9.279 -35.606 1 94.51 ? O5 OBN 1104 A 1 HETATM 33 O O11 OBN . . . G 5 -26.022 4.342 -36.974 1 89.28 ? O11 OBN 1104 A 1 HETATM 34 O O14 OBN . . . G 5 -23.94 4.252 -31.866 1 89.41 ? O14 OBN 1104 A 1 HETATM 35 O O19 OBN . . . G 5 -23.329 6.305 -37.464 1 88.28 ? O19 OBN 1104 A 1 HETATM 36 O O21 OBN . . . G 5 -23.207 0.081 -30.472 1 91.4 ? O21 OBN 1104 A 1 HETATM 37 O O23 OBN . . . G 5 -22.865 -2.011 -31.121 1 89.45 ? O23 OBN 1104 A 1 HETATM 38 O O2' OBN . . . G 5 -27.187 13.377 -37.647 1 86.83 ? O2' OBN 1104 A 1 HETATM 39 O O3' OBN . . . G 5 -28.023 12.354 -40.078 1 97.89 ? O3' OBN 1104 A 1 HETATM 40 O O4' OBN . . . G 5 -30.601 11.534 -38.995 1 96.41 ? O4' OBN 1104 A 1 HETATM 41 O O5' OBN . . . G 5 -28.478 11.132 -36.095 1 89.18 ? O5' OBN 1104 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #