data_4XE5 # _model_server_result.job_id 2hIIKVwVp9khC2YLeW4ziw _model_server_result.datetime_utc '2024-11-13 15:53:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xe5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1106}' # _entry.id 4XE5 # _exptl.entry_id 4XE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XE5 _cell.length_a 64.75 _cell.length_b 301.07 _cell.length_c 242.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C SER 373 A SER 373 1_555 A N BFD 374 A BFD 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C BFD 374 A BFD 374 1_555 A N LYS 375 A LYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD2 BFD 374 A BFD 374 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A O THR 376 A THR 376 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A OD1 ASP 715 A ASP 715 1_555 D MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc4 A OD1 ASP 745 A ASP 745 1_555 E MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A OD2 ASP 745 A ASP 745 1_555 E MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 A OD1 ASN 781 A ASN 781 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 A OE2 GLU 784 A GLU 784 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc8 A OD1 ASP 809 A ASP 809 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 A OD2 ASP 809 A ASP 809 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc10 D MG MG . A MG 1101 1_555 J O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc11 D MG MG . A MG 1101 1_555 J O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc14 F MG MG . A MG 1103 1_555 J O HOH . A HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 88 n n C1 C10 CLR sing 89 n n C1 H11 CLR sing 90 n n C1 H12 CLR sing 91 n n C2 C3 CLR sing 92 n n C2 H21 CLR sing 93 n n C2 H22 CLR sing 94 n n C3 C4 CLR sing 95 n n C3 O1 CLR sing 96 n n C3 H3 CLR sing 97 n n C4 C5 CLR sing 98 n n C4 H41 CLR sing 99 n n C4 H42 CLR sing 100 n n C5 C6 CLR doub 101 n n C5 C10 CLR sing 102 n n C6 C7 CLR sing 103 n n C6 H6 CLR sing 104 n n C7 C8 CLR sing 105 n n C7 H71 CLR sing 106 n n C7 H72 CLR sing 107 n n C8 C9 CLR sing 108 n n C8 C14 CLR sing 109 n n C8 H8 CLR sing 110 n n C9 C10 CLR sing 111 n n C9 C11 CLR sing 112 n n C9 H9 CLR sing 113 n n C10 C19 CLR sing 114 n n C11 C12 CLR sing 115 n n C11 H111 CLR sing 116 n n C11 H112 CLR sing 117 n n C12 C13 CLR sing 118 n n C12 H121 CLR sing 119 n n C12 H122 CLR sing 120 n n C13 C14 CLR sing 121 n n C13 C17 CLR sing 122 n n C13 C18 CLR sing 123 n n C14 C15 CLR sing 124 n n C14 H14 CLR sing 125 n n C15 C16 CLR sing 126 n n C15 H151 CLR sing 127 n n C15 H152 CLR sing 128 n n C16 C17 CLR sing 129 n n C16 H161 CLR sing 130 n n C16 H162 CLR sing 131 n n C17 C20 CLR sing 132 n n C17 H17 CLR sing 133 n n C18 H181 CLR sing 134 n n C18 H182 CLR sing 135 n n C18 H183 CLR sing 136 n n C19 H191 CLR sing 137 n n C19 H192 CLR sing 138 n n C19 H193 CLR sing 139 n n C20 C21 CLR sing 140 n n C20 C22 CLR sing 141 n n C20 H20 CLR sing 142 n n C21 H211 CLR sing 143 n n C21 H212 CLR sing 144 n n C21 H213 CLR sing 145 n n C22 C23 CLR sing 146 n n C22 H221 CLR sing 147 n n C22 H222 CLR sing 148 n n C23 C24 CLR sing 149 n n C23 H231 CLR sing 150 n n C23 H232 CLR sing 151 n n C24 C25 CLR sing 152 n n C24 H241 CLR sing 153 n n C24 H242 CLR sing 154 n n C25 C26 CLR sing 155 n n C25 C27 CLR sing 156 n n C25 H25 CLR sing 157 n n C26 H261 CLR sing 158 n n C26 H262 CLR sing 159 n n C26 H263 CLR sing 160 n n C27 H271 CLR sing 161 n n C27 H272 CLR sing 162 n n C27 H273 CLR sing 163 n n O1 H1 CLR sing 164 n n # _atom_sites.entry_id 4XE5 _atom_sites.fract_transf_matrix[1][1] 0.015444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1101 1101 MG MG . E 4 MG A 1 1102 1102 MG MG . F 4 MG A 1 1103 1103 MG MG . G 5 OBN A 1 1104 1104 OBN OBN . H 6 CLR A 1 1105 1105 CLR CLR . I 6 CLR A 1 1106 1106 CLR CLR . J 7 HOH A 1 1201 1201 HOH HOH . J 7 HOH A 2 1202 1202 HOH HOH . J 7 HOH A 3 1203 1205 HOH HOH . J 7 HOH A 4 1204 1204 HOH HOH . J 7 HOH A 5 1205 1203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 6 -16.526 11.305 -5.477 1 91.54 ? C1 CLR 1106 A 1 HETATM 2 C C2 CLR . . . I 6 -16.232 12.617 -6.166 1 88.36 ? C2 CLR 1106 A 1 HETATM 3 C C3 CLR . . . I 6 -14.803 12.699 -6.664 1 86.4 ? C3 CLR 1106 A 1 HETATM 4 C C4 CLR . . . I 6 -14.51 11.503 -7.527 1 86.12 ? C4 CLR 1106 A 1 HETATM 5 C C5 CLR . . . I 6 -14.826 10.158 -6.902 1 86.82 ? C5 CLR 1106 A 1 HETATM 6 C C6 CLR . . . I 6 -14.479 8.949 -7.769 1 87.21 ? C6 CLR 1106 A 1 HETATM 7 C C7 CLR . . . I 6 -14.414 7.73 -6.918 1 89.75 ? C7 CLR 1106 A 1 HETATM 8 C C8 CLR . . . I 6 -15.845 7.518 -6.444 1 90.14 ? C8 CLR 1106 A 1 HETATM 9 C C9 CLR . . . I 6 -16.396 8.694 -5.621 1 92.22 ? C9 CLR 1106 A 1 HETATM 10 C C10 CLR . . . I 6 -16.225 10.065 -6.312 1 89.77 ? C10 CLR 1106 A 1 HETATM 11 C C11 CLR . . . I 6 -17.828 8.449 -4.924 1 91.84 ? C11 CLR 1106 A 1 HETATM 12 C C12 CLR . . . I 6 -17.905 7.141 -4.18 1 88.57 ? C12 CLR 1106 A 1 HETATM 13 C C13 CLR . . . I 6 -17.597 5.96 -5.179 1 87.44 ? C13 CLR 1106 A 1 HETATM 14 C C14 CLR . . . I 6 -16.163 6.169 -5.643 1 88.13 ? C14 CLR 1106 A 1 HETATM 15 C C15 CLR . . . I 6 -15.9 4.848 -6.241 1 87.69 ? C15 CLR 1106 A 1 HETATM 16 C C16 CLR . . . I 6 -16.206 3.959 -5.073 1 90 ? C16 CLR 1106 A 1 HETATM 17 C C17 CLR . . . I 6 -17.396 4.723 -4.343 1 90.28 ? C17 CLR 1106 A 1 HETATM 18 C C18 CLR . . . I 6 -18.812 5.907 -6.158 1 86.25 ? C18 CLR 1106 A 1 HETATM 19 C C19 CLR . . . I 6 -17.249 10.033 -7.423 1 86.68 ? C19 CLR 1106 A 1 HETATM 20 C C20 CLR . . . I 6 -18.528 3.786 -4.062 1 91.75 ? C20 CLR 1106 A 1 HETATM 21 C C21 CLR . . . I 6 -19.744 4.18 -3.171 1 92.37 ? C21 CLR 1106 A 1 HETATM 22 C C22 CLR . . . I 6 -17.914 2.517 -3.36 1 90.49 ? C22 CLR 1106 A 1 HETATM 23 C C23 CLR . . . I 6 -18.792 1.29 -3.103 1 87.29 ? C23 CLR 1106 A 1 HETATM 24 C C24 CLR . . . I 6 -18.991 0.328 -4.276 1 86.16 ? C24 CLR 1106 A 1 HETATM 25 C C25 CLR . . . I 6 -18.25 -1.006 -4.256 1 86.64 ? C25 CLR 1106 A 1 HETATM 26 C C26 CLR . . . I 6 -16.763 -0.892 -4.471 1 86.24 ? C26 CLR 1106 A 1 HETATM 27 C C27 CLR . . . I 6 -18.663 -1.947 -3.152 1 89.07 ? C27 CLR 1106 A 1 HETATM 28 O O1 CLR . . . I 6 -14.515 13.874 -7.33 1 86.12 ? O1 CLR 1106 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #