data_4XE6
#
_model_server_result.job_id            N3gF2WG5p2-pWSPqbD9xaw 
_model_server_result.datetime_utc      '2024-11-29 04:20:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xe6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4XE6 
#
_exptl.entry_id    4XE6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XE6 
_cell.length_a            78.902 
_cell.length_b            78.902 
_cell.length_c            108.118 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XE6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 283 n n 
PA O2A NDP sing 284 n n 
PA O5B NDP sing 285 n n 
PA O3 NDP sing 286 n n 
O2A HOA2 NDP sing 287 n n 
O5B C5B NDP sing 288 n n 
C5B C4B NDP sing 289 n n 
C5B H51A NDP sing 290 n n 
C5B H52A NDP sing 291 n n 
C4B O4B NDP sing 292 n n 
C4B C3B NDP sing 293 n n 
C4B H4B NDP sing 294 n n 
O4B C1B NDP sing 295 n n 
C3B O3B NDP sing 296 n n 
C3B C2B NDP sing 297 n n 
C3B H3B NDP sing 298 n n 
O3B HO3A NDP sing 299 n n 
C2B O2B NDP sing 300 n n 
C2B C1B NDP sing 301 n n 
C2B H2B NDP sing 302 n n 
O2B P2B NDP sing 303 n n 
C1B N9A NDP sing 304 n n 
C1B H1B NDP sing 305 n n 
N9A C8A NDP sing 306 n y 
N9A C4A NDP sing 307 n y 
C8A N7A NDP doub 308 n y 
C8A H8A NDP sing 309 n n 
N7A C5A NDP sing 310 n y 
C5A C6A NDP sing 311 n y 
C5A C4A NDP doub 312 n y 
C6A N6A NDP sing 313 n n 
C6A N1A NDP doub 314 n y 
N6A H61A NDP sing 315 n n 
N6A H62A NDP sing 316 n n 
N1A C2A NDP sing 317 n y 
C2A N3A NDP doub 318 n y 
C2A H2A NDP sing 319 n n 
N3A C4A NDP sing 320 n y 
O3 PN NDP sing 321 n n 
PN O1N NDP doub 322 n n 
PN O2N NDP sing 323 n n 
PN O5D NDP sing 324 n n 
O2N H21N NDP sing 325 n n 
O5D C5D NDP sing 326 n n 
C5D C4D NDP sing 327 n n 
C5D H51N NDP sing 328 n n 
C5D H52N NDP sing 329 n n 
C4D O4D NDP sing 330 n n 
C4D C3D NDP sing 331 n n 
C4D H4D NDP sing 332 n n 
O4D C1D NDP sing 333 n n 
C3D O3D NDP sing 334 n n 
C3D C2D NDP sing 335 n n 
C3D H3D NDP sing 336 n n 
O3D HO3N NDP sing 337 n n 
C2D O2D NDP sing 338 n n 
C2D C1D NDP sing 339 n n 
C2D H2D NDP sing 340 n n 
O2D HO2N NDP sing 341 n n 
C1D N1N NDP sing 342 n n 
C1D H1D NDP sing 343 n n 
N1N C2N NDP sing 344 n n 
N1N C6N NDP sing 345 n n 
C2N C3N NDP doub 346 n n 
C2N H2N NDP sing 347 n n 
C3N C7N NDP sing 348 n n 
C3N C4N NDP sing 349 n n 
C7N O7N NDP doub 350 n n 
C7N N7N NDP sing 351 n n 
N7N H71N NDP sing 352 n n 
N7N H72N NDP sing 353 n n 
C4N C5N NDP sing 354 n n 
C4N H41N NDP sing 355 n n 
C4N H42N NDP sing 356 n n 
C5N C6N NDP doub 357 n n 
C5N H5N NDP sing 358 n n 
C6N H6N NDP sing 359 n n 
P2B O1X NDP doub 360 n n 
P2B O2X NDP sing 361 n n 
P2B O3X NDP sing 362 n n 
O2X HOP2 NDP sing 363 n n 
O3X HOP3 NDP sing 364 n n 
#
_atom_sites.entry_id                     4XE6 
_atom_sites.fract_transf_matrix[1][1]    0.012674 
_atom_sites.fract_transf_matrix[1][2]    0.007317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 06U X 1 201 1 06U DRG . 
C 3 ACT X 1 202 701 ACT ACT . 
D 4 NDP X 1 203 207 NDP NAP . 
E 5 HOH X 1 301 26 HOH HOH . 
E 5 HOH X 2 302 12 HOH HOH . 
E 5 HOH X 3 303 32 HOH HOH . 
E 5 HOH X 4 304 8 HOH HOH . 
E 5 HOH X 5 305 30 HOH HOH . 
E 5 HOH X 6 306 6 HOH HOH . 
E 5 HOH X 7 307 19 HOH HOH . 
E 5 HOH X 8 308 15 HOH HOH . 
E 5 HOH X 9 309 40 HOH HOH . 
E 5 HOH X 10 310 27 HOH HOH . 
E 5 HOH X 11 311 24 HOH HOH . 
E 5 HOH X 12 312 36 HOH HOH . 
E 5 HOH X 13 313 23 HOH HOH . 
E 5 HOH X 14 314 16 HOH HOH . 
E 5 HOH X 15 315 35 HOH HOH . 
E 5 HOH X 16 316 1 HOH HOH . 
E 5 HOH X 17 317 2 HOH HOH . 
E 5 HOH X 18 318 4 HOH HOH . 
E 5 HOH X 19 319 9 HOH HOH . 
E 5 HOH X 20 320 10 HOH HOH . 
E 5 HOH X 21 321 14 HOH HOH . 
E 5 HOH X 22 322 18 HOH HOH . 
E 5 HOH X 23 323 21 HOH HOH . 
E 5 HOH X 24 324 22 HOH HOH . 
E 5 HOH X 25 325 25 HOH HOH . 
E 5 HOH X 26 326 28 HOH HOH . 
E 5 HOH X 27 327 31 HOH HOH . 
E 5 HOH X 28 328 33 HOH HOH . 
E 5 HOH X 29 329 34 HOH HOH . 
E 5 HOH X 30 330 37 HOH HOH . 
E 5 HOH X 31 331 41 HOH HOH . 
E 5 HOH X 32 332 42 HOH HOH . 
E 5 HOH X 33 333 43 HOH HOH . 
E 5 HOH X 34 334 44 HOH HOH . 
E 5 HOH X 35 335 45 HOH HOH . 
E 5 HOH X 36 336 46 HOH HOH . 
E 5 HOH X 37 337 47 HOH HOH . 
E 5 HOH X 38 338 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 4 46.643 37.151 114.229 1 26.96 ? PA NDP 203 X 1 
HETATM 2 O O1A NDP . . . D 4 47.078 38.364 113.492 1 22.61 ? O1A NDP 203 X 1 
HETATM 3 O O2A NDP . . . D 4 45.326 36.641 113.798 1 22.6 ? O2A NDP 203 X 1 
HETATM 4 O O5B NDP . . . D 4 47.784 36.022 114.072 1 29.07 ? O5B NDP 203 X 1 
HETATM 5 C C5B NDP . . . D 4 49.152 36.391 114.163 1 25.37 ? C5B NDP 203 X 1 
HETATM 6 C C4B NDP . . . D 4 49.97 35.443 113.296 1 27.05 ? C4B NDP 203 X 1 
HETATM 7 O O4B NDP . . . D 4 49.661 35.584 111.921 1 33.23 ? O4B NDP 203 X 1 
HETATM 8 C C3B NDP . . . D 4 51.476 35.63 113.337 1 25.66 ? C3B NDP 203 X 1 
HETATM 9 O O3B NDP . . . D 4 52.019 35.142 114.538 1 23.82 ? O3B NDP 203 X 1 
HETATM 10 C C2B NDP . . . D 4 51.854 34.81 112.121 1 28.44 ? C2B NDP 203 X 1 
HETATM 11 O O2B NDP . . . D 4 51.613 33.442 112.368 1 31.08 ? O2B NDP 203 X 1 
HETATM 12 C C1B NDP . . . D 4 50.782 35.222 111.139 1 27.98 ? C1B NDP 203 X 1 
HETATM 13 N N9A NDP . . . D 4 51.277 36.383 110.404 1 27.73 ? N9A NDP 203 X 1 
HETATM 14 C C8A NDP . . . D 4 50.919 37.698 110.578 1 27.6 ? C8A NDP 203 X 1 
HETATM 15 N N7A NDP . . . D 4 51.624 38.448 109.698 1 26.45 ? N7A NDP 203 X 1 
HETATM 16 C C5A NDP . . . D 4 52.434 37.632 108.984 1 28.37 ? C5A NDP 203 X 1 
HETATM 17 C C6A NDP . . . D 4 53.347 37.868 107.965 1 25.97 ? C6A NDP 203 X 1 
HETATM 18 N N6A NDP . . . D 4 53.573 39.098 107.514 1 24.54 ? N6A NDP 203 X 1 
HETATM 19 N N1A NDP . . . D 4 54.026 36.804 107.412 1 31.11 ? N1A NDP 203 X 1 
HETATM 20 C C2A NDP . . . D 4 53.794 35.513 107.867 1 28.8 ? C2A NDP 203 X 1 
HETATM 21 N N3A NDP . . . D 4 52.891 35.28 108.885 1 29.88 ? N3A NDP 203 X 1 
HETATM 22 C C4A NDP . . . D 4 52.221 36.327 109.425 1 29.69 ? C4A NDP 203 X 1 
HETATM 23 O O3 NDP . . . D 4 46.653 37.393 115.821 1 22.27 ? O3 NDP 203 X 1 
HETATM 24 P PN NDP . . . D 4 47.29 38.556 116.727 1 22.33 ? PN NDP 203 X 1 
HETATM 25 O O1N NDP . . . D 4 48.735 38.647 116.434 1 29.26 ? O1N NDP 203 X 1 
HETATM 26 O O2N NDP . . . D 4 46.454 39.753 116.643 1 24.97 ? O2N NDP 203 X 1 
HETATM 27 O O5D NDP . . . D 4 47.115 37.952 118.18 1 22.63 ? O5D NDP 203 X 1 
HETATM 28 C C5D NDP . . . D 4 46.273 38.613 119.061 1 21.86 ? C5D NDP 203 X 1 
HETATM 29 C C4D NDP . . . D 4 45 37.8 119.244 1 22.09 ? C4D NDP 203 X 1 
HETATM 30 O O4D NDP . . . D 4 44.119 37.809 118.131 1 25.04 ? O4D NDP 203 X 1 
HETATM 31 C C3D NDP . . . D 4 45.132 36.313 119.606 1 24.77 ? C3D NDP 203 X 1 
HETATM 32 O O3D NDP . . . D 4 45.186 36.178 121.008 1 28.59 ? O3D NDP 203 X 1 
HETATM 33 C C2D NDP . . . D 4 43.835 35.714 119.078 1 27.19 ? C2D NDP 203 X 1 
HETATM 34 O O2D NDP . . . D 4 43.074 35.147 120.109 1 38.44 ? O2D NDP 203 X 1 
HETATM 35 C C1D NDP . . . D 4 43.178 37.025 118.829 1 29.46 ? C1D NDP 203 X 1 
HETATM 36 N N1N NDP . . . D 4 41.746 37.097 118.534 1 30.22 ? N1N NDP 203 X 1 
HETATM 37 C C2N NDP . . . D 4 41.265 37.632 117.381 1 25.59 ? C2N NDP 203 X 1 
HETATM 38 C C3N NDP . . . D 4 39.893 37.741 117.226 1 26.53 ? C3N NDP 203 X 1 
HETATM 39 C C7N NDP . . . D 4 39.351 38.792 116.339 1 20.95 ? C7N NDP 203 X 1 
HETATM 40 O O7N NDP . . . D 4 39.867 38.936 115.039 1 24.29 ? O7N NDP 203 X 1 
HETATM 41 N N7N NDP . . . D 4 38.353 39.521 116.822 1 24.84 ? N7N NDP 203 X 1 
HETATM 42 C C4N NDP . . . D 4 39.039 37.36 118.252 1 31.26 ? C4N NDP 203 X 1 
HETATM 43 C C5N NDP . . . D 4 39.554 36.876 119.439 1 32.64 ? C5N NDP 203 X 1 
HETATM 44 C C6N NDP . . . D 4 40.923 36.765 119.568 1 25.46 ? C6N NDP 203 X 1 
HETATM 45 P P2B NDP . . . D 4 52.77 32.44 112.86 1 31.54 ? P2B NDP 203 X 1 
HETATM 46 O O1X NDP . . . D 4 53.214 32.917 114.23 1 23.45 ? O1X NDP 203 X 1 
HETATM 47 O O2X NDP . . . D 4 52.235 31.026 112.99 1 23.97 ? O2X NDP 203 X 1 
HETATM 48 O O3X NDP . . . D 4 53.891 32.472 111.847 1 25.23 ? O3X NDP 203 X 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#