data_4XEC
#
_model_server_result.job_id            6_kh6fQotDcIQKxUssZ0fg 
_model_server_result.datetime_utc      '2024-11-05 05:26:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4XEC 
#
_exptl.entry_id    4XEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XEC 
_cell.length_a            78.902 
_cell.length_b            78.902 
_cell.length_c            108.118 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 283 n n 
PA O2A NDP sing 284 n n 
PA O5B NDP sing 285 n n 
PA O3 NDP sing 286 n n 
O2A HOA2 NDP sing 287 n n 
O5B C5B NDP sing 288 n n 
C5B C4B NDP sing 289 n n 
C5B H51A NDP sing 290 n n 
C5B H52A NDP sing 291 n n 
C4B O4B NDP sing 292 n n 
C4B C3B NDP sing 293 n n 
C4B H4B NDP sing 294 n n 
O4B C1B NDP sing 295 n n 
C3B O3B NDP sing 296 n n 
C3B C2B NDP sing 297 n n 
C3B H3B NDP sing 298 n n 
O3B HO3A NDP sing 299 n n 
C2B O2B NDP sing 300 n n 
C2B C1B NDP sing 301 n n 
C2B H2B NDP sing 302 n n 
O2B P2B NDP sing 303 n n 
C1B N9A NDP sing 304 n n 
C1B H1B NDP sing 305 n n 
N9A C8A NDP sing 306 n y 
N9A C4A NDP sing 307 n y 
C8A N7A NDP doub 308 n y 
C8A H8A NDP sing 309 n n 
N7A C5A NDP sing 310 n y 
C5A C6A NDP sing 311 n y 
C5A C4A NDP doub 312 n y 
C6A N6A NDP sing 313 n n 
C6A N1A NDP doub 314 n y 
N6A H61A NDP sing 315 n n 
N6A H62A NDP sing 316 n n 
N1A C2A NDP sing 317 n y 
C2A N3A NDP doub 318 n y 
C2A H2A NDP sing 319 n n 
N3A C4A NDP sing 320 n y 
O3 PN NDP sing 321 n n 
PN O1N NDP doub 322 n n 
PN O2N NDP sing 323 n n 
PN O5D NDP sing 324 n n 
O2N H21N NDP sing 325 n n 
O5D C5D NDP sing 326 n n 
C5D C4D NDP sing 327 n n 
C5D H51N NDP sing 328 n n 
C5D H52N NDP sing 329 n n 
C4D O4D NDP sing 330 n n 
C4D C3D NDP sing 331 n n 
C4D H4D NDP sing 332 n n 
O4D C1D NDP sing 333 n n 
C3D O3D NDP sing 334 n n 
C3D C2D NDP sing 335 n n 
C3D H3D NDP sing 336 n n 
O3D HO3N NDP sing 337 n n 
C2D O2D NDP sing 338 n n 
C2D C1D NDP sing 339 n n 
C2D H2D NDP sing 340 n n 
O2D HO2N NDP sing 341 n n 
C1D N1N NDP sing 342 n n 
C1D H1D NDP sing 343 n n 
N1N C2N NDP sing 344 n n 
N1N C6N NDP sing 345 n n 
C2N C3N NDP doub 346 n n 
C2N H2N NDP sing 347 n n 
C3N C7N NDP sing 348 n n 
C3N C4N NDP sing 349 n n 
C7N O7N NDP doub 350 n n 
C7N N7N NDP sing 351 n n 
N7N H71N NDP sing 352 n n 
N7N H72N NDP sing 353 n n 
C4N C5N NDP sing 354 n n 
C4N H41N NDP sing 355 n n 
C4N H42N NDP sing 356 n n 
C5N C6N NDP doub 357 n n 
C5N H5N NDP sing 358 n n 
C6N H6N NDP sing 359 n n 
P2B O1X NDP doub 360 n n 
P2B O2X NDP sing 361 n n 
P2B O3X NDP sing 362 n n 
O2X HOP2 NDP sing 363 n n 
O3X HOP3 NDP sing 364 n n 
#
_atom_sites.entry_id                     4XEC 
_atom_sites.fract_transf_matrix[1][1]    0.012674 
_atom_sites.fract_transf_matrix[1][2]    0.007317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 06U X 1 201 1 06U DRG . 
C 3 ACT X 1 202 701 ACT ACT . 
D 4 NDP X 1 203 207 NDP NAP . 
E 5 HOH X 1 301 26 HOH HOH . 
E 5 HOH X 2 302 12 HOH HOH . 
E 5 HOH X 3 303 32 HOH HOH . 
E 5 HOH X 4 304 8 HOH HOH . 
E 5 HOH X 5 305 30 HOH HOH . 
E 5 HOH X 6 306 6 HOH HOH . 
E 5 HOH X 7 307 19 HOH HOH . 
E 5 HOH X 8 308 15 HOH HOH . 
E 5 HOH X 9 309 40 HOH HOH . 
E 5 HOH X 10 310 27 HOH HOH . 
E 5 HOH X 11 311 24 HOH HOH . 
E 5 HOH X 12 312 36 HOH HOH . 
E 5 HOH X 13 313 23 HOH HOH . 
E 5 HOH X 14 314 16 HOH HOH . 
E 5 HOH X 15 315 35 HOH HOH . 
E 5 HOH X 16 316 1 HOH HOH . 
E 5 HOH X 17 317 2 HOH HOH . 
E 5 HOH X 18 318 4 HOH HOH . 
E 5 HOH X 19 319 9 HOH HOH . 
E 5 HOH X 20 320 10 HOH HOH . 
E 5 HOH X 21 321 14 HOH HOH . 
E 5 HOH X 22 322 18 HOH HOH . 
E 5 HOH X 23 323 21 HOH HOH . 
E 5 HOH X 24 324 22 HOH HOH . 
E 5 HOH X 25 325 25 HOH HOH . 
E 5 HOH X 26 326 28 HOH HOH . 
E 5 HOH X 27 327 31 HOH HOH . 
E 5 HOH X 28 328 33 HOH HOH . 
E 5 HOH X 29 329 34 HOH HOH . 
E 5 HOH X 30 330 37 HOH HOH . 
E 5 HOH X 31 331 41 HOH HOH . 
E 5 HOH X 32 332 42 HOH HOH . 
E 5 HOH X 33 333 43 HOH HOH . 
E 5 HOH X 34 334 44 HOH HOH . 
E 5 HOH X 35 335 45 HOH HOH . 
E 5 HOH X 36 336 46 HOH HOH . 
E 5 HOH X 37 337 47 HOH HOH . 
E 5 HOH X 38 338 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 4 46.626 37.12 114.186 1 27.32 ? PA NDP 203 X 1 
HETATM 2 O O1A NDP . . . D 4 46.872 38.361 113.42 1 22.22 ? O1A NDP 203 X 1 
HETATM 3 O O2A NDP . . . D 4 45.401 36.408 113.768 1 25.19 ? O2A NDP 203 X 1 
HETATM 4 O O5B NDP . . . D 4 47.87 36.103 114.075 1 28.98 ? O5B NDP 203 X 1 
HETATM 5 C C5B NDP . . . D 4 49.205 36.529 113.912 1 28.97 ? C5B NDP 203 X 1 
HETATM 6 C C4B NDP . . . D 4 49.925 35.429 113.169 1 27.68 ? C4B NDP 203 X 1 
HETATM 7 O O4B NDP . . . D 4 49.649 35.511 111.777 1 35.79 ? O4B NDP 203 X 1 
HETATM 8 C C3B NDP . . . D 4 51.436 35.484 113.296 1 24.89 ? C3B NDP 203 X 1 
HETATM 9 O O3B NDP . . . D 4 51.913 34.958 114.528 1 26.97 ? O3B NDP 203 X 1 
HETATM 10 C C2B NDP . . . D 4 51.797 34.703 112.051 1 28.79 ? C2B NDP 203 X 1 
HETATM 11 O O2B NDP . . . D 4 51.519 33.337 112.213 1 34.85 ? O2B NDP 203 X 1 
HETATM 12 C C1B NDP . . . D 4 50.797 35.198 111.026 1 29.94 ? C1B NDP 203 X 1 
HETATM 13 N N9A NDP . . . D 4 51.277 36.37 110.275 1 27.73 ? N9A NDP 203 X 1 
HETATM 14 C C8A NDP . . . D 4 50.918 37.69 110.431 1 27.87 ? C8A NDP 203 X 1 
HETATM 15 N N7A NDP . . . D 4 51.598 38.424 109.513 1 27.33 ? N7A NDP 203 X 1 
HETATM 16 C C5A NDP . . . D 4 52.373 37.592 108.774 1 31.11 ? C5A NDP 203 X 1 
HETATM 17 C C6A NDP . . . D 4 53.257 37.785 107.712 1 27.78 ? C6A NDP 203 X 1 
HETATM 18 N N6A NDP . . . D 4 53.487 38.996 107.222 1 26.44 ? N6A NDP 203 X 1 
HETATM 19 N N1A NDP . . . D 4 53.914 36.699 107.157 1 36.83 ? N1A NDP 203 X 1 
HETATM 20 C C2A NDP . . . D 4 53.691 35.428 107.644 1 31.25 ? C2A NDP 203 X 1 
HETATM 21 N N3A NDP . . . D 4 52.817 35.233 108.693 1 31.13 ? N3A NDP 203 X 1 
HETATM 22 C C4A NDP . . . D 4 52.171 36.299 109.245 1 32.64 ? C4A NDP 203 X 1 
HETATM 23 O O3 NDP . . . D 4 46.509 37.433 115.746 1 23.57 ? O3 NDP 203 X 1 
HETATM 24 P PN NDP . . . D 4 47.269 38.509 116.64 1 22.71 ? PN NDP 203 X 1 
HETATM 25 O O1N NDP . . . D 4 48.732 38.333 116.445 1 31.79 ? O1N NDP 203 X 1 
HETATM 26 O O2N NDP . . . D 4 46.649 39.827 116.406 1 25.54 ? O2N NDP 203 X 1 
HETATM 27 O O5D NDP . . . D 4 46.979 37.953 118.114 1 19.74 ? O5D NDP 203 X 1 
HETATM 28 C C5D NDP . . . D 4 46.148 38.593 119.037 1 22.72 ? C5D NDP 203 X 1 
HETATM 29 C C4D NDP . . . D 4 44.859 37.807 119.134 1 20.63 ? C4D NDP 203 X 1 
HETATM 30 O O4D NDP . . . D 4 44.197 37.702 117.882 1 27.2 ? O4D NDP 203 X 1 
HETATM 31 C C3D NDP . . . D 4 45.078 36.369 119.632 1 22.53 ? C3D NDP 203 X 1 
HETATM 32 O O3D NDP . . . D 4 45.064 36.293 121.043 1 30.74 ? O3D NDP 203 X 1 
HETATM 33 C C2D NDP . . . D 4 43.951 35.587 118.987 1 29.21 ? C2D NDP 203 X 1 
HETATM 34 O O2D NDP . . . D 4 43.018 35.118 119.922 1 38.01 ? O2D NDP 203 X 1 
HETATM 35 C C1D NDP . . . D 4 43.325 36.69 118.219 1 26.82 ? C1D NDP 203 X 1 
HETATM 36 N N1N NDP . . . D 4 41.914 36.925 118.263 1 30.82 ? N1N NDP 203 X 1 
HETATM 37 C C2N NDP . . . D 4 41.296 37.54 117.229 1 24.27 ? C2N NDP 203 X 1 
HETATM 38 C C3N NDP . . . D 4 39.95 37.795 117.362 1 25.76 ? C3N NDP 203 X 1 
HETATM 39 C C7N NDP . . . D 4 39.338 38.729 116.385 1 20.62 ? C7N NDP 203 X 1 
HETATM 40 O O7N NDP . . . D 4 39.918 38.823 115.109 1 25.12 ? O7N NDP 203 X 1 
HETATM 41 N N7N NDP . . . D 4 38.285 39.434 116.755 1 25.26 ? N7N NDP 203 X 1 
HETATM 42 C C4N NDP . . . D 4 39.251 37.447 118.512 1 27.97 ? C4N NDP 203 X 1 
HETATM 43 C C5N NDP . . . D 4 39.917 36.841 119.553 1 30.57 ? C5N NDP 203 X 1 
HETATM 44 C C6N NDP . . . D 4 41.272 36.62 119.438 1 22.13 ? C6N NDP 203 X 1 
HETATM 45 P P2B NDP . . . D 4 52.657 32.295 112.676 1 33.21 ? P2B NDP 203 X 1 
HETATM 46 O O1X NDP . . . D 4 53.103 32.708 114.058 1 18.15 ? O1X NDP 203 X 1 
HETATM 47 O O2X NDP . . . D 4 52.025 30.933 112.71 1 30.33 ? O2X NDP 203 X 1 
HETATM 48 O O3X NDP . . . D 4 53.788 32.372 111.684 1 24.88 ? O3X NDP 203 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#