data_4XED
#
_model_server_result.job_id            Pxgn3qq2AEbyC_rry2fLgw 
_model_server_result.datetime_utc      '2024-11-24 06:51:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    4XED 
#
_exptl.entry_id    4XED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XED 
_cell.length_a            46.186 
_cell.length_b            48.869 
_cell.length_c            78.509 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 96 A THR 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 97 A MSE 94 1_555 A N PRO 98 A PRO 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD1 ASN 4 A ASN 1 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc2 A O ASP 5 A ASP 2 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc3 A OD1 ASP 32 A ASP 29 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc4 A OD2 ASP 32 A ASP 29 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc5 A OD1 ASN 34 A ASN 31 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc6 A OD2 ASP 36 A ASP 33 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc7 A OD2 ASP 82 A ASP 79 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     4XED 
_atom_sites.fract_transf_matrix[1][1]    0.021652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020463 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 101 1 CA CA . 
C 3 EDO A 1 102 1 EDO EDO . 
D 3 EDO A 1 103 2 EDO EDO . 
E 4 HOH A 1 201 50 HOH HOH . 
E 4 HOH A 2 202 116 HOH HOH . 
E 4 HOH A 3 203 103 HOH HOH . 
E 4 HOH A 4 204 30 HOH HOH . 
E 4 HOH A 5 205 58 HOH HOH . 
E 4 HOH A 6 206 54 HOH HOH . 
E 4 HOH A 7 207 105 HOH HOH . 
E 4 HOH A 8 208 57 HOH HOH . 
E 4 HOH A 9 209 13 HOH HOH . 
E 4 HOH A 10 210 68 HOH HOH . 
E 4 HOH A 11 211 62 HOH HOH . 
E 4 HOH A 12 212 65 HOH HOH . 
E 4 HOH A 13 213 52 HOH HOH . 
E 4 HOH A 14 214 39 HOH HOH . 
E 4 HOH A 15 215 92 HOH HOH . 
E 4 HOH A 16 216 15 HOH HOH . 
E 4 HOH A 17 217 23 HOH HOH . 
E 4 HOH A 18 218 40 HOH HOH . 
E 4 HOH A 19 219 51 HOH HOH . 
E 4 HOH A 20 220 12 HOH HOH . 
E 4 HOH A 21 221 89 HOH HOH . 
E 4 HOH A 22 222 5 HOH HOH . 
E 4 HOH A 23 223 69 HOH HOH . 
E 4 HOH A 24 224 41 HOH HOH . 
E 4 HOH A 25 225 16 HOH HOH . 
E 4 HOH A 26 226 55 HOH HOH . 
E 4 HOH A 27 227 61 HOH HOH . 
E 4 HOH A 28 228 20 HOH HOH . 
E 4 HOH A 29 229 46 HOH HOH . 
E 4 HOH A 30 230 117 HOH HOH . 
E 4 HOH A 31 231 75 HOH HOH . 
E 4 HOH A 32 232 2 HOH HOH . 
E 4 HOH A 33 233 45 HOH HOH . 
E 4 HOH A 34 234 36 HOH HOH . 
E 4 HOH A 35 235 115 HOH HOH . 
E 4 HOH A 36 236 33 HOH HOH . 
E 4 HOH A 37 237 4 HOH HOH . 
E 4 HOH A 38 238 24 HOH HOH . 
E 4 HOH A 39 239 67 HOH HOH . 
E 4 HOH A 40 240 25 HOH HOH . 
E 4 HOH A 41 241 114 HOH HOH . 
E 4 HOH A 42 242 29 HOH HOH . 
E 4 HOH A 43 243 34 HOH HOH . 
E 4 HOH A 44 244 6 HOH HOH . 
E 4 HOH A 45 245 86 HOH HOH . 
E 4 HOH A 46 246 106 HOH HOH . 
E 4 HOH A 47 247 8 HOH HOH . 
E 4 HOH A 48 248 21 HOH HOH . 
E 4 HOH A 49 249 3 HOH HOH . 
E 4 HOH A 50 250 22 HOH HOH . 
E 4 HOH A 51 251 9 HOH HOH . 
E 4 HOH A 52 252 26 HOH HOH . 
E 4 HOH A 53 253 17 HOH HOH . 
E 4 HOH A 54 254 111 HOH HOH . 
E 4 HOH A 55 255 11 HOH HOH . 
E 4 HOH A 56 256 19 HOH HOH . 
E 4 HOH A 57 257 64 HOH HOH . 
E 4 HOH A 58 258 14 HOH HOH . 
E 4 HOH A 59 259 78 HOH HOH . 
E 4 HOH A 60 260 47 HOH HOH . 
E 4 HOH A 61 261 48 HOH HOH . 
E 4 HOH A 62 262 70 HOH HOH . 
E 4 HOH A 63 263 94 HOH HOH . 
E 4 HOH A 64 264 71 HOH HOH . 
E 4 HOH A 65 265 109 HOH HOH . 
E 4 HOH A 66 266 97 HOH HOH . 
E 4 HOH A 67 267 113 HOH HOH . 
E 4 HOH A 68 268 93 HOH HOH . 
E 4 HOH A 69 269 84 HOH HOH . 
E 4 HOH A 70 270 118 HOH HOH . 
E 4 HOH A 71 271 98 HOH HOH . 
E 4 HOH A 72 272 91 HOH HOH . 
E 4 HOH A 73 273 43 HOH HOH . 
E 4 HOH A 74 274 60 HOH HOH . 
E 4 HOH A 75 275 72 HOH HOH . 
E 4 HOH A 76 276 59 HOH HOH . 
E 4 HOH A 77 277 108 HOH HOH . 
E 4 HOH A 78 278 119 HOH HOH . 
E 4 HOH A 79 279 90 HOH HOH . 
E 4 HOH A 80 280 81 HOH HOH . 
E 4 HOH A 81 281 95 HOH HOH . 
E 4 HOH A 82 282 82 HOH HOH . 
E 4 HOH A 83 283 28 HOH HOH . 
E 4 HOH A 84 284 104 HOH HOH . 
E 4 HOH A 85 285 120 HOH HOH . 
E 4 HOH A 86 286 88 HOH HOH . 
E 4 HOH A 87 287 37 HOH HOH . 
E 4 HOH A 88 288 27 HOH HOH . 
E 4 HOH A 89 289 1 HOH HOH . 
E 4 HOH A 90 290 7 HOH HOH . 
E 4 HOH A 91 291 10 HOH HOH . 
E 4 HOH A 92 292 18 HOH HOH . 
E 4 HOH A 93 293 31 HOH HOH . 
E 4 HOH A 94 294 32 HOH HOH . 
E 4 HOH A 95 295 35 HOH HOH . 
E 4 HOH A 96 296 38 HOH HOH . 
E 4 HOH A 97 297 42 HOH HOH . 
E 4 HOH A 98 298 44 HOH HOH . 
E 4 HOH A 99 299 49 HOH HOH . 
E 4 HOH A 100 300 53 HOH HOH . 
E 4 HOH A 101 301 56 HOH HOH . 
E 4 HOH A 102 302 63 HOH HOH . 
E 4 HOH A 103 303 66 HOH HOH . 
E 4 HOH A 104 304 73 HOH HOH . 
E 4 HOH A 105 305 74 HOH HOH . 
E 4 HOH A 106 306 76 HOH HOH . 
E 4 HOH A 107 307 77 HOH HOH . 
E 4 HOH A 108 308 79 HOH HOH . 
E 4 HOH A 109 309 80 HOH HOH . 
E 4 HOH A 110 310 83 HOH HOH . 
E 4 HOH A 111 311 85 HOH HOH . 
E 4 HOH A 112 312 87 HOH HOH . 
E 4 HOH A 113 313 96 HOH HOH . 
E 4 HOH A 114 314 99 HOH HOH . 
E 4 HOH A 115 315 100 HOH HOH . 
E 4 HOH A 116 316 101 HOH HOH . 
E 4 HOH A 117 317 102 HOH HOH . 
E 4 HOH A 118 318 107 HOH HOH . 
E 4 HOH A 119 319 110 HOH HOH . 
E 4 HOH A 120 320 112 HOH HOH . 
E 4 HOH A 121 321 121 HOH HOH . 
E 4 HOH A 122 322 122 HOH HOH . 
E 4 HOH A 123 323 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 12.176 5.239 12.932 1 36.76 ? C1 EDO 103 A 1 
HETATM 2 O O1 EDO . . . D 3 11.049 4.971 13.778 1 35.44 ? O1 EDO 103 A 1 
HETATM 3 C C2 EDO . . . D 3 12.96 6.421 13.48 1 36.76 ? C2 EDO 103 A 1 
HETATM 4 O O2 EDO . . . D 3 14.318 6.043 13.749 1 38.44 ? O2 EDO 103 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#