data_4XES # _model_server_result.job_id Hc9ZWWWBZMkaB6Y8J5Jrug _model_server_result.datetime_utc '2025-02-05 10:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1207}' # _entry.id 4XES # _exptl.entry_id 4XES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XES _cell.length_a 49.84 _cell.length_b 88.44 _cell.length_c 161.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XES _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 142 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 193 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 225 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 4XES _atom_sites.fract_transf_matrix[1][1] 0.020064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CIT A 1 1201 1 CIT CIT . D 4 PEG A 1 1202 1 PEG PEG . E 4 PEG A 1 1203 2 PEG PEG . F 4 PEG A 1 1204 5 PEG PEG . G 4 PEG A 1 1205 6 PEG PEG . H 4 PEG A 1 1206 8 PEG PEG . I 5 GOL A 1 1207 1 GOL GOL . J 5 GOL A 1 1208 4 GOL GOL . K 5 GOL A 1 1209 5 GOL GOL . L 6 EPE A 1 1210 1 EPE EPE . M 6 EPE A 1 1211 2 EPE EPE . N 7 HOH A 1 1301 10 HOH HOH . N 7 HOH A 2 1302 37 HOH HOH . N 7 HOH A 3 1303 11 HOH HOH . N 7 HOH A 4 1304 9 HOH HOH . N 7 HOH A 5 1305 53 HOH HOH . N 7 HOH A 6 1306 6 HOH HOH . N 7 HOH A 7 1307 13 HOH HOH . N 7 HOH A 8 1308 14 HOH HOH . N 7 HOH A 9 1309 1 HOH HOH . N 7 HOH A 10 1310 48 HOH HOH . N 7 HOH A 11 1311 49 HOH HOH . N 7 HOH A 12 1312 25 HOH HOH . N 7 HOH A 13 1313 47 HOH HOH . N 7 HOH A 14 1314 43 HOH HOH . N 7 HOH A 15 1315 38 HOH HOH . N 7 HOH A 16 1316 4 HOH HOH . N 7 HOH A 17 1317 30 HOH HOH . N 7 HOH A 18 1318 54 HOH HOH . N 7 HOH A 19 1319 17 HOH HOH . N 7 HOH A 20 1320 32 HOH HOH . N 7 HOH A 21 1321 50 HOH HOH . N 7 HOH A 22 1322 42 HOH HOH . N 7 HOH A 23 1323 41 HOH HOH . N 7 HOH A 24 1324 12 HOH HOH . N 7 HOH A 25 1325 33 HOH HOH . N 7 HOH A 26 1326 15 HOH HOH . N 7 HOH A 27 1327 40 HOH HOH . N 7 HOH A 28 1328 36 HOH HOH . N 7 HOH A 29 1329 39 HOH HOH . N 7 HOH A 30 1330 52 HOH HOH . N 7 HOH A 31 1331 22 HOH HOH . N 7 HOH A 32 1332 8 HOH HOH . N 7 HOH A 33 1333 3 HOH HOH . N 7 HOH A 34 1334 19 HOH HOH . N 7 HOH A 35 1335 18 HOH HOH . N 7 HOH A 36 1336 24 HOH HOH . N 7 HOH A 37 1337 27 HOH HOH . N 7 HOH A 38 1338 26 HOH HOH . N 7 HOH A 39 1339 21 HOH HOH . N 7 HOH A 40 1340 20 HOH HOH . N 7 HOH A 41 1341 44 HOH HOH . N 7 HOH A 42 1342 34 HOH HOH . N 7 HOH A 43 1343 35 HOH HOH . N 7 HOH A 44 1344 28 HOH HOH . N 7 HOH A 45 1345 31 HOH HOH . N 7 HOH A 46 1346 29 HOH HOH . N 7 HOH A 47 1347 16 HOH HOH . N 7 HOH A 48 1348 45 HOH HOH . N 7 HOH A 49 1349 55 HOH HOH . N 7 HOH A 50 1350 5 HOH HOH . N 7 HOH A 51 1351 46 HOH HOH . N 7 HOH A 52 1352 23 HOH HOH . N 7 HOH A 53 1353 51 HOH HOH . O 7 HOH B 1 101 7 HOH HOH . O 7 HOH B 2 102 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 15.531 -26.193 -56.024 1 72.25 ? C1 GOL 1207 A 1 HETATM 2 O O1 GOL . . . I 5 14.339 -26.142 -55.229 1 69.16 ? O1 GOL 1207 A 1 HETATM 3 C C2 GOL . . . I 5 15.673 -27.584 -56.63 1 74.38 ? C2 GOL 1207 A 1 HETATM 4 O O2 GOL . . . I 5 14.494 -27.907 -57.387 1 77.32 ? O2 GOL 1207 A 1 HETATM 5 C C3 GOL . . . I 5 16.921 -27.662 -57.514 1 74.79 ? C3 GOL 1207 A 1 HETATM 6 O O3 GOL . . . I 5 16.675 -27.236 -58.865 1 73.84 ? O3 GOL 1207 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #