data_4XEW
#
_model_server_result.job_id            jtbL5iMsBqrzDSTKJO65KA 
_model_server_result.datetime_utc      '2024-12-27 09:19:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xew 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    4XEW 
#
_exptl.entry_id    4XEW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XEW 
_cell.length_a            62.755 
_cell.length_b            66.153 
_cell.length_c            203.261 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XEW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 303 A LYS 283 1_555 C C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 doub 
covale ? covale2 B NZ LYS 303 B LYS 283 1_555 E C4A PLP . B PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 doub 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 294 n y 
N1 C6 PLP sing 295 n y 
C2 C2A PLP sing 296 n n 
C2 C3 PLP sing 297 n y 
C2A H2A1 PLP sing 298 n n 
C2A H2A2 PLP sing 299 n n 
C2A H2A3 PLP sing 300 n n 
C3 O3 PLP sing 301 n n 
C3 C4 PLP doub 302 n y 
O3 HO3 PLP sing 303 n n 
C4 C4A PLP sing 304 n n 
C4 C5 PLP sing 305 n y 
C4A O4A PLP doub 306 n n 
C4A H4A PLP sing 307 n n 
C5 C6 PLP doub 308 n y 
C5 C5A PLP sing 309 n n 
C6 H6 PLP sing 310 n n 
C5A O4P PLP sing 311 n n 
C5A H5A1 PLP sing 312 n n 
C5A H5A2 PLP sing 313 n n 
O4P P PLP sing 314 n n 
P O1P PLP doub 315 n n 
P O2P PLP sing 316 n n 
P O3P PLP sing 317 n n 
O2P HOP2 PLP sing 318 n n 
O3P HOP3 PLP sing 319 n n 
#
_atom_sites.entry_id                     4XEW 
_atom_sites.fract_transf_matrix[1][1]    0.015935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 501 501 PLP PLP . 
D 3 40N A 1 502 1 40N DRG . 
E 2 PLP B 1 501 501 PLP PLP . 
F 3 40N B 1 502 1 40N DRG . 
G 4 HOH A 1 601 21 HOH HOH . 
G 4 HOH A 2 602 61 HOH HOH . 
G 4 HOH A 3 603 129 HOH HOH . 
G 4 HOH A 4 604 37 HOH HOH . 
G 4 HOH A 5 605 69 HOH HOH . 
G 4 HOH A 6 606 197 HOH HOH . 
G 4 HOH A 7 607 91 HOH HOH . 
G 4 HOH A 8 608 155 HOH HOH . 
G 4 HOH A 9 609 188 HOH HOH . 
G 4 HOH A 10 610 45 HOH HOH . 
G 4 HOH A 11 611 1 HOH HOH . 
G 4 HOH A 12 612 19 HOH HOH . 
G 4 HOH A 13 613 24 HOH HOH . 
G 4 HOH A 14 614 70 HOH HOH . 
G 4 HOH A 15 615 53 HOH HOH . 
G 4 HOH A 16 616 172 HOH HOH . 
G 4 HOH A 17 617 7 HOH HOH . 
G 4 HOH A 18 618 177 HOH HOH . 
G 4 HOH A 19 619 196 HOH HOH . 
G 4 HOH A 20 620 165 HOH HOH . 
G 4 HOH A 21 621 62 HOH HOH . 
G 4 HOH A 22 622 2 HOH HOH . 
G 4 HOH A 23 623 46 HOH HOH . 
G 4 HOH A 24 624 60 HOH HOH . 
G 4 HOH A 25 625 167 HOH HOH . 
G 4 HOH A 26 626 10 HOH HOH . 
G 4 HOH A 27 627 8 HOH HOH . 
G 4 HOH A 28 628 137 HOH HOH . 
G 4 HOH A 29 629 193 HOH HOH . 
G 4 HOH A 30 630 180 HOH HOH . 
G 4 HOH A 31 631 5 HOH HOH . 
G 4 HOH A 32 632 29 HOH HOH . 
G 4 HOH A 33 633 38 HOH HOH . 
G 4 HOH A 34 634 11 HOH HOH . 
G 4 HOH A 35 635 56 HOH HOH . 
G 4 HOH A 36 636 184 HOH HOH . 
G 4 HOH A 37 637 58 HOH HOH . 
G 4 HOH A 38 638 57 HOH HOH . 
G 4 HOH A 39 639 52 HOH HOH . 
G 4 HOH A 40 640 159 HOH HOH . 
G 4 HOH A 41 641 33 HOH HOH . 
G 4 HOH A 42 642 73 HOH HOH . 
G 4 HOH A 43 643 50 HOH HOH . 
G 4 HOH A 44 644 138 HOH HOH . 
G 4 HOH A 45 645 40 HOH HOH . 
G 4 HOH A 46 646 156 HOH HOH . 
G 4 HOH A 47 647 205 HOH HOH . 
G 4 HOH A 48 648 115 HOH HOH . 
G 4 HOH A 49 649 17 HOH HOH . 
G 4 HOH A 50 650 195 HOH HOH . 
G 4 HOH A 51 651 39 HOH HOH . 
G 4 HOH A 52 652 179 HOH HOH . 
G 4 HOH A 53 653 149 HOH HOH . 
G 4 HOH A 54 654 148 HOH HOH . 
G 4 HOH A 55 655 4 HOH HOH . 
G 4 HOH A 56 656 153 HOH HOH . 
G 4 HOH A 57 657 160 HOH HOH . 
G 4 HOH A 58 658 34 HOH HOH . 
G 4 HOH A 59 659 49 HOH HOH . 
G 4 HOH A 60 660 190 HOH HOH . 
G 4 HOH A 61 661 87 HOH HOH . 
G 4 HOH A 62 662 210 HOH HOH . 
G 4 HOH A 63 663 71 HOH HOH . 
G 4 HOH A 64 664 54 HOH HOH . 
G 4 HOH A 65 665 35 HOH HOH . 
G 4 HOH A 66 666 59 HOH HOH . 
G 4 HOH A 67 667 63 HOH HOH . 
G 4 HOH A 68 668 31 HOH HOH . 
G 4 HOH A 69 669 25 HOH HOH . 
G 4 HOH A 70 670 43 HOH HOH . 
G 4 HOH A 71 671 36 HOH HOH . 
G 4 HOH A 72 672 152 HOH HOH . 
G 4 HOH A 73 673 44 HOH HOH . 
G 4 HOH A 74 674 32 HOH HOH . 
G 4 HOH A 75 675 125 HOH HOH . 
G 4 HOH A 76 676 204 HOH HOH . 
G 4 HOH A 77 677 187 HOH HOH . 
G 4 HOH A 78 678 158 HOH HOH . 
G 4 HOH A 79 679 81 HOH HOH . 
G 4 HOH A 80 680 198 HOH HOH . 
G 4 HOH A 81 681 72 HOH HOH . 
G 4 HOH A 82 682 154 HOH HOH . 
G 4 HOH A 83 683 23 HOH HOH . 
G 4 HOH A 84 684 192 HOH HOH . 
G 4 HOH A 85 685 42 HOH HOH . 
G 4 HOH A 86 686 189 HOH HOH . 
G 4 HOH A 87 687 209 HOH HOH . 
G 4 HOH A 88 688 171 HOH HOH . 
G 4 HOH A 89 689 132 HOH HOH . 
G 4 HOH A 90 690 128 HOH HOH . 
G 4 HOH A 91 691 41 HOH HOH . 
G 4 HOH A 92 692 127 HOH HOH . 
G 4 HOH A 93 693 174 HOH HOH . 
G 4 HOH A 94 694 161 HOH HOH . 
G 4 HOH A 95 695 170 HOH HOH . 
G 4 HOH A 96 696 194 HOH HOH . 
G 4 HOH A 97 697 208 HOH HOH . 
G 4 HOH A 98 698 169 HOH HOH . 
G 4 HOH A 99 699 203 HOH HOH . 
G 4 HOH A 100 700 168 HOH HOH . 
G 4 HOH A 101 701 191 HOH HOH . 
G 4 HOH A 102 702 173 HOH HOH . 
G 4 HOH A 103 703 55 HOH HOH . 
G 4 HOH A 104 704 202 HOH HOH . 
G 4 HOH A 105 705 64 HOH HOH . 
G 4 HOH A 106 706 181 HOH HOH . 
G 4 HOH A 107 707 65 HOH HOH . 
G 4 HOH A 108 708 207 HOH HOH . 
G 4 HOH A 109 709 22 HOH HOH . 
G 4 HOH A 110 710 212 HOH HOH . 
G 4 HOH A 111 711 157 HOH HOH . 
G 4 HOH A 112 712 9 HOH HOH . 
G 4 HOH A 113 713 131 HOH HOH . 
G 4 HOH A 114 714 105 HOH HOH . 
G 4 HOH A 115 715 206 HOH HOH . 
G 4 HOH A 116 716 211 HOH HOH . 
G 4 HOH A 117 717 185 HOH HOH . 
G 4 HOH A 118 718 126 HOH HOH . 
G 4 HOH A 119 719 186 HOH HOH . 
H 4 HOH B 1 601 82 HOH HOH . 
H 4 HOH B 2 602 163 HOH HOH . 
H 4 HOH B 3 603 20 HOH HOH . 
H 4 HOH B 4 604 139 HOH HOH . 
H 4 HOH B 5 605 176 HOH HOH . 
H 4 HOH B 6 606 68 HOH HOH . 
H 4 HOH B 7 607 99 HOH HOH . 
H 4 HOH B 8 608 74 HOH HOH . 
H 4 HOH B 9 609 103 HOH HOH . 
H 4 HOH B 10 610 28 HOH HOH . 
H 4 HOH B 11 611 134 HOH HOH . 
H 4 HOH B 12 612 90 HOH HOH . 
H 4 HOH B 13 613 93 HOH HOH . 
H 4 HOH B 14 614 121 HOH HOH . 
H 4 HOH B 15 615 164 HOH HOH . 
H 4 HOH B 16 616 136 HOH HOH . 
H 4 HOH B 17 617 200 HOH HOH . 
H 4 HOH B 18 618 175 HOH HOH . 
H 4 HOH B 19 619 116 HOH HOH . 
H 4 HOH B 20 620 86 HOH HOH . 
H 4 HOH B 21 621 78 HOH HOH . 
H 4 HOH B 22 622 26 HOH HOH . 
H 4 HOH B 23 623 15 HOH HOH . 
H 4 HOH B 24 624 12 HOH HOH . 
H 4 HOH B 25 625 111 HOH HOH . 
H 4 HOH B 26 626 141 HOH HOH . 
H 4 HOH B 27 627 6 HOH HOH . 
H 4 HOH B 28 628 183 HOH HOH . 
H 4 HOH B 29 629 96 HOH HOH . 
H 4 HOH B 30 630 100 HOH HOH . 
H 4 HOH B 31 631 66 HOH HOH . 
H 4 HOH B 32 632 98 HOH HOH . 
H 4 HOH B 33 633 80 HOH HOH . 
H 4 HOH B 34 634 107 HOH HOH . 
H 4 HOH B 35 635 94 HOH HOH . 
H 4 HOH B 36 636 124 HOH HOH . 
H 4 HOH B 37 637 199 HOH HOH . 
H 4 HOH B 38 638 13 HOH HOH . 
H 4 HOH B 39 639 30 HOH HOH . 
H 4 HOH B 40 640 201 HOH HOH . 
H 4 HOH B 41 641 104 HOH HOH . 
H 4 HOH B 42 642 112 HOH HOH . 
H 4 HOH B 43 643 143 HOH HOH . 
H 4 HOH B 44 644 18 HOH HOH . 
H 4 HOH B 45 645 102 HOH HOH . 
H 4 HOH B 46 646 92 HOH HOH . 
H 4 HOH B 47 647 14 HOH HOH . 
H 4 HOH B 48 648 140 HOH HOH . 
H 4 HOH B 49 649 88 HOH HOH . 
H 4 HOH B 50 650 133 HOH HOH . 
H 4 HOH B 51 651 123 HOH HOH . 
H 4 HOH B 52 652 135 HOH HOH . 
H 4 HOH B 53 653 106 HOH HOH . 
H 4 HOH B 54 654 16 HOH HOH . 
H 4 HOH B 55 655 150 HOH HOH . 
H 4 HOH B 56 656 3 HOH HOH . 
H 4 HOH B 57 657 89 HOH HOH . 
H 4 HOH B 58 658 114 HOH HOH . 
H 4 HOH B 59 659 83 HOH HOH . 
H 4 HOH B 60 660 27 HOH HOH . 
H 4 HOH B 61 661 95 HOH HOH . 
H 4 HOH B 62 662 166 HOH HOH . 
H 4 HOH B 63 663 101 HOH HOH . 
H 4 HOH B 64 664 162 HOH HOH . 
H 4 HOH B 65 665 48 HOH HOH . 
H 4 HOH B 66 666 151 HOH HOH . 
H 4 HOH B 67 667 182 HOH HOH . 
H 4 HOH B 68 668 147 HOH HOH . 
H 4 HOH B 69 669 142 HOH HOH . 
H 4 HOH B 70 670 110 HOH HOH . 
H 4 HOH B 71 671 67 HOH HOH . 
H 4 HOH B 72 672 113 HOH HOH . 
H 4 HOH B 73 673 97 HOH HOH . 
H 4 HOH B 74 674 118 HOH HOH . 
H 4 HOH B 75 675 75 HOH HOH . 
H 4 HOH B 76 676 117 HOH HOH . 
H 4 HOH B 77 677 109 HOH HOH . 
H 4 HOH B 78 678 178 HOH HOH . 
H 4 HOH B 79 679 130 HOH HOH . 
H 4 HOH B 80 680 76 HOH HOH . 
H 4 HOH B 81 681 85 HOH HOH . 
H 4 HOH B 82 682 79 HOH HOH . 
H 4 HOH B 83 683 144 HOH HOH . 
H 4 HOH B 84 684 146 HOH HOH . 
H 4 HOH B 85 685 145 HOH HOH . 
H 4 HOH B 86 686 84 HOH HOH . 
H 4 HOH B 87 687 47 HOH HOH . 
H 4 HOH B 88 688 108 HOH HOH . 
H 4 HOH B 89 689 77 HOH HOH . 
H 4 HOH B 90 690 51 HOH HOH . 
H 4 HOH B 91 691 119 HOH HOH . 
H 4 HOH B 92 692 122 HOH HOH . 
H 4 HOH B 93 693 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 -6.016 23.3 -27.067 1 13.96 ? N1 PLP 501 A 1 
HETATM 2 C C2 PLP . . . C 2 -6.639 22.438 -26.222 1 13.88 ? C2 PLP 501 A 1 
HETATM 3 C C2A PLP . . . C 2 -7.262 21.198 -26.776 1 13.43 ? C2A PLP 501 A 1 
HETATM 4 C C3 PLP . . . C 2 -6.719 22.745 -24.769 1 14.19 ? C3 PLP 501 A 1 
HETATM 5 O O3 PLP . . . C 2 -7.355 21.943 -23.884 1 14.32 ? O3 PLP 501 A 1 
HETATM 6 C C4 PLP . . . C 2 -6.068 23.982 -24.296 1 14.39 ? C4 PLP 501 A 1 
HETATM 7 C C4A PLP . . . C 2 -6.128 24.324 -22.841 1 14.16 ? C4A PLP 501 A 1 
HETATM 8 C C5 PLP . . . C 2 -5.405 24.847 -25.322 1 14.5 ? C5 PLP 501 A 1 
HETATM 9 C C6 PLP . . . C 2 -5.434 24.44 -26.664 1 14.44 ? C6 PLP 501 A 1 
HETATM 10 C C5A PLP . . . C 2 -4.753 26.158 -24.997 1 14.56 ? C5A PLP 501 A 1 
HETATM 11 O O4P PLP . . . C 2 -3.795 26.086 -23.946 1 15.87 ? O4P PLP 501 A 1 
HETATM 12 P P PLP . . . C 2 -3.135 27.464 -23.372 1 16.06 ? P PLP 501 A 1 
HETATM 13 O O1P PLP . . . C 2 -2.908 28.334 -24.59 1 14.7 ? O1P PLP 501 A 1 
HETATM 14 O O2P PLP . . . C 2 -4.249 27.932 -22.478 1 15.3 ? O2P PLP 501 A 1 
HETATM 15 O O3P PLP . . . C 2 -1.899 26.902 -22.703 1 15.7 ? O3P PLP 501 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#