data_4XF6 # _model_server_result.job_id '_o77Spv2bOjwi4sACF3U1Q' _model_server_result.datetime_utc '2024-11-14 17:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":303}' # _entry.id 4XF6 # _exptl.entry_id 4XF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XF6 _cell.length_a 77.364 _cell.length_b 81.255 _cell.length_c 82.046 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,AA 1 1 B,S,T,U,V,W,X,Y,Z,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G I IOD . A IOD 305 1_555 L I IOD . A IOD 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc1 A OE1 GLN 136 A GLN 136 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 C O8 LIP . A LIP 301 1_555 F MG MG . A MG 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 D O3B ADP . A ADP 302 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 F MG MG . A MG 304 1_555 AA O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 F MG MG . A MG 304 1_555 AA O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 F MG MG . A MG 304 1_555 AA O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 B OE1 GLN 136 B GLN 136 1_555 V MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 S O7 LIP . B LIP 301 1_555 V MG MG . B MG 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 T O1B ADP . B ADP 302 1_555 V MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc10 V MG MG . B MG 304 1_555 BA O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 V MG MG . B MG 304 1_555 BA O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 V MG MG . B MG 304 1_555 BA O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 226 n n C1 C6 INS sing 227 n n C1 O1 INS sing 228 n n C1 H1 INS sing 229 n n C2 C3 INS sing 230 n n C2 O2 INS sing 231 n n C2 H2 INS sing 232 n n C3 C4 INS sing 233 n n C3 O3 INS sing 234 n n C3 H3 INS sing 235 n n C4 C5 INS sing 236 n n C4 O4 INS sing 237 n n C4 H4 INS sing 238 n n C5 C6 INS sing 239 n n C5 O5 INS sing 240 n n C5 H5 INS sing 241 n n C6 O6 INS sing 242 n n C6 H6 INS sing 243 n n O1 HO1 INS sing 244 n n O2 HO2 INS sing 245 n n O3 HO3 INS sing 246 n n O4 HO4 INS sing 247 n n O5 HO5 INS sing 248 n n O6 HO6 INS sing 249 n n # _atom_sites.entry_id 4XF6 _atom_sites.fract_transf_matrix[1][1] 0.012926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIP A 1 301 301 LIP MIP . D 3 ADP A 1 302 302 ADP ADP . E 4 INS A 1 303 303 INS INS . F 5 MG A 1 304 401 MG MG . G 6 IOD A 1 305 502 IOD IOD . H 6 IOD A 1 306 503 IOD IOD . I 6 IOD A 1 307 504 IOD IOD . J 6 IOD A 1 308 505 IOD IOD . K 6 IOD A 1 309 506 IOD IOD . L 6 IOD A 1 310 507 IOD IOD . M 6 IOD A 1 311 509 IOD IOD . N 6 IOD A 1 312 510 IOD IOD . O 6 IOD A 1 313 511 IOD IOD . P 6 IOD A 1 314 513 IOD IOD . Q 6 IOD A 1 315 515 IOD IOD . R 7 EDO A 1 316 701 EDO EDO . S 2 LIP B 1 301 301 LIP MIP . T 3 ADP B 1 302 302 ADP ADP . U 4 INS B 1 303 303 INS INS . V 5 MG B 1 304 401 MG MG . W 6 IOD B 1 305 501 IOD IOD . X 6 IOD B 1 306 508 IOD IOD . Y 6 IOD B 1 307 512 IOD IOD . Z 6 IOD B 1 308 514 IOD IOD . AA 8 HOH A 1 401 649 HOH HOH . AA 8 HOH A 2 402 612 HOH HOH . AA 8 HOH A 3 403 628 HOH HOH . AA 8 HOH A 4 404 615 HOH HOH . AA 8 HOH A 5 405 625 HOH HOH . AA 8 HOH A 6 406 643 HOH HOH . AA 8 HOH A 7 407 630 HOH HOH . AA 8 HOH A 8 408 622 HOH HOH . AA 8 HOH A 9 409 651 HOH HOH . AA 8 HOH A 10 410 659 HOH HOH . AA 8 HOH A 11 411 627 HOH HOH . AA 8 HOH A 12 412 648 HOH HOH . AA 8 HOH A 13 413 604 HOH HOH . AA 8 HOH A 14 414 605 HOH HOH . AA 8 HOH A 15 415 606 HOH HOH . AA 8 HOH A 16 416 607 HOH HOH . AA 8 HOH A 17 417 609 HOH HOH . AA 8 HOH A 18 418 611 HOH HOH . AA 8 HOH A 19 419 614 HOH HOH . AA 8 HOH A 20 420 616 HOH HOH . AA 8 HOH A 21 421 618 HOH HOH . AA 8 HOH A 22 422 619 HOH HOH . AA 8 HOH A 23 423 621 HOH HOH . AA 8 HOH A 24 424 623 HOH HOH . AA 8 HOH A 25 425 626 HOH HOH . AA 8 HOH A 26 426 629 HOH HOH . AA 8 HOH A 27 427 631 HOH HOH . AA 8 HOH A 28 428 633 HOH HOH . AA 8 HOH A 29 429 634 HOH HOH . AA 8 HOH A 30 430 637 HOH HOH . AA 8 HOH A 31 431 639 HOH HOH . AA 8 HOH A 32 432 641 HOH HOH . AA 8 HOH A 33 433 644 HOH HOH . AA 8 HOH A 34 434 646 HOH HOH . AA 8 HOH A 35 435 647 HOH HOH . AA 8 HOH A 36 436 650 HOH HOH . AA 8 HOH A 37 437 652 HOH HOH . BA 8 HOH B 1 401 658 HOH HOH . BA 8 HOH B 2 402 624 HOH HOH . BA 8 HOH B 3 403 613 HOH HOH . BA 8 HOH B 4 404 645 HOH HOH . BA 8 HOH B 5 405 653 HOH HOH . BA 8 HOH B 6 406 601 HOH HOH . BA 8 HOH B 7 407 602 HOH HOH . BA 8 HOH B 8 408 603 HOH HOH . BA 8 HOH B 9 409 608 HOH HOH . BA 8 HOH B 10 410 610 HOH HOH . BA 8 HOH B 11 411 617 HOH HOH . BA 8 HOH B 12 412 620 HOH HOH . BA 8 HOH B 13 413 632 HOH HOH . BA 8 HOH B 14 414 635 HOH HOH . BA 8 HOH B 15 415 636 HOH HOH . BA 8 HOH B 16 416 638 HOH HOH . BA 8 HOH B 17 417 640 HOH HOH . BA 8 HOH B 18 418 642 HOH HOH . BA 8 HOH B 19 419 654 HOH HOH . BA 8 HOH B 20 420 655 HOH HOH . BA 8 HOH B 21 421 656 HOH HOH . BA 8 HOH B 22 422 657 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . B . U 4 11.645 47.033 -11.766 0.3 24.1 ? C1 INS 303 B 1 HETATM 2 C C2 INS . B . U 4 11.859 45.898 -12.754 0.3 22.62 ? C2 INS 303 B 1 HETATM 3 C C3 INS . B . U 4 10.603 45.714 -13.616 0.3 22.6 ? C3 INS 303 B 1 HETATM 4 C C4 INS . B . U 4 10.374 46.979 -14.419 0.3 22.65 ? C4 INS 303 B 1 HETATM 5 C C5 INS . B . U 4 10.195 48.189 -13.505 0.3 24.15 ? C5 INS 303 B 1 HETATM 6 C C6 INS . B . U 4 11.353 48.336 -12.508 0.3 24.08 ? C6 INS 303 B 1 HETATM 7 O O1 INS . B . U 4 12.781 47.158 -10.89 0.3 24.7 ? O1 INS 303 B 1 HETATM 8 O O2 INS . B . U 4 12.947 46.231 -13.606 0.3 21.39 ? O2 INS 303 B 1 HETATM 9 O O3 INS . B . U 4 10.741 44.6 -14.512 0.3 21.42 ? O3 INS 303 B 1 HETATM 10 O O4 INS . B . U 4 9.215 46.821 -15.26 0.3 23.3 ? O4 INS 303 B 1 HETATM 11 O O5 INS . B . U 4 10.057 49.38 -14.305 0.3 24.45 ? O5 INS 303 B 1 HETATM 12 O O6 INS . B . U 4 11.014 49.312 -11.519 0.3 25.62 ? O6 INS 303 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #