data_4XF7 # _model_server_result.job_id -FDvQkBlOedfhVDgxWyg5Q _model_server_result.datetime_utc '2024-11-14 23:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4XF7 # _exptl.entry_id 4XF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XF7 _cell.length_a 77.134 _cell.length_b 81.176 _cell.length_c 81.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,EA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O SER 123 A SER 123 1_555 N I IOD . A IOD 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? covale ? covale2 Z I IOD . B IOD 309 1_555 DA I IOD . B IOD 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc1 A OE1 GLN 136 A GLN 136 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 D O2B ACP . A ACP 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc3 E MG MG . A MG 303 1_555 EA O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 E MG MG . A MG 303 1_555 EA O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 E MG MG . A MG 303 1_555 EA O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 E MG MG . A MG 303 1_555 EA O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 B OE1 GLN 136 B GLN 136 1_555 T MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 S O1B ACP . B ACP 302 1_555 T MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 T MG MG . B MG 303 1_555 FA O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc10 T MG MG . B MG 303 1_555 FA O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc11 T MG MG . B MG 303 1_555 FA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc12 T MG MG . B MG 303 1_555 FA O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 224 n n C1 C6 INS sing 225 n n C1 O1 INS sing 226 n n C1 H1 INS sing 227 n n C2 C3 INS sing 228 n n C2 O2 INS sing 229 n n C2 H2 INS sing 230 n n C3 C4 INS sing 231 n n C3 O3 INS sing 232 n n C3 H3 INS sing 233 n n C4 C5 INS sing 234 n n C4 O4 INS sing 235 n n C4 H4 INS sing 236 n n C5 C6 INS sing 237 n n C5 O5 INS sing 238 n n C5 H5 INS sing 239 n n C6 O6 INS sing 240 n n C6 H6 INS sing 241 n n O1 HO1 INS sing 242 n n O2 HO2 INS sing 243 n n O3 HO3 INS sing 244 n n O4 HO4 INS sing 245 n n O5 HO5 INS sing 246 n n O6 HO6 INS sing 247 n n # _atom_sites.entry_id 4XF7 _atom_sites.fract_transf_matrix[1][1] 0.012964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 INS A 1 301 301 INS INS . D 3 ACP A 1 302 302 ACP ACP . E 4 MG A 1 303 401 MG MG . F 5 IOD A 1 304 501 IOD IOD . G 5 IOD A 1 305 503 IOD IOD . H 5 IOD A 1 306 505 IOD IOD . I 5 IOD A 1 307 507 IOD IOD . J 5 IOD A 1 308 508 IOD IOD . K 5 IOD A 1 309 509 IOD IOD . L 5 IOD A 1 310 510 IOD IOD . M 5 IOD A 1 311 512 IOD IOD . N 5 IOD A 1 312 513 IOD IOD . O 5 IOD A 1 313 519 IOD IOD . P 5 IOD A 1 314 521 IOD IOD . Q 5 IOD A 1 315 522 IOD IOD . R 2 INS B 1 301 301 INS INS . S 3 ACP B 1 302 302 ACP ACP . T 4 MG B 1 303 401 MG MG . U 5 IOD B 1 304 502 IOD IOD . V 5 IOD B 1 305 504 IOD IOD . W 5 IOD B 1 306 506 IOD IOD . X 5 IOD B 1 307 511 IOD IOD . Y 5 IOD B 1 308 514 IOD IOD . Z 5 IOD B 1 309 515 IOD IOD . AA 5 IOD B 1 310 516 IOD IOD . BA 5 IOD B 1 311 517 IOD IOD . CA 5 IOD B 1 312 518 IOD IOD . DA 5 IOD B 1 313 520 IOD IOD . EA 6 HOH A 1 401 635 HOH HOH . EA 6 HOH A 2 402 669 HOH HOH . EA 6 HOH A 3 403 654 HOH HOH . EA 6 HOH A 4 404 659 HOH HOH . EA 6 HOH A 5 405 648 HOH HOH . EA 6 HOH A 6 406 670 HOH HOH . EA 6 HOH A 7 407 664 HOH HOH . EA 6 HOH A 8 408 624 HOH HOH . EA 6 HOH A 9 409 637 HOH HOH . EA 6 HOH A 10 410 672 HOH HOH . EA 6 HOH A 11 411 650 HOH HOH . EA 6 HOH A 12 412 684 HOH HOH . EA 6 HOH A 13 413 691 HOH HOH . EA 6 HOH A 14 414 623 HOH HOH . EA 6 HOH A 15 415 630 HOH HOH . EA 6 HOH A 16 416 629 HOH HOH . EA 6 HOH A 17 417 688 HOH HOH . EA 6 HOH A 18 418 705 HOH HOH . EA 6 HOH A 19 419 700 HOH HOH . EA 6 HOH A 20 420 662 HOH HOH . EA 6 HOH A 21 421 693 HOH HOH . EA 6 HOH A 22 422 680 HOH HOH . EA 6 HOH A 23 423 692 HOH HOH . EA 6 HOH A 24 424 603 HOH HOH . EA 6 HOH A 25 425 604 HOH HOH . EA 6 HOH A 26 426 605 HOH HOH . EA 6 HOH A 27 427 606 HOH HOH . EA 6 HOH A 28 428 608 HOH HOH . EA 6 HOH A 29 429 609 HOH HOH . EA 6 HOH A 30 430 610 HOH HOH . EA 6 HOH A 31 431 616 HOH HOH . EA 6 HOH A 32 432 618 HOH HOH . EA 6 HOH A 33 433 620 HOH HOH . EA 6 HOH A 34 434 621 HOH HOH . EA 6 HOH A 35 435 622 HOH HOH . EA 6 HOH A 36 436 627 HOH HOH . EA 6 HOH A 37 437 628 HOH HOH . EA 6 HOH A 38 438 631 HOH HOH . EA 6 HOH A 39 439 634 HOH HOH . EA 6 HOH A 40 440 636 HOH HOH . EA 6 HOH A 41 441 644 HOH HOH . EA 6 HOH A 42 442 655 HOH HOH . EA 6 HOH A 43 443 657 HOH HOH . EA 6 HOH A 44 444 663 HOH HOH . EA 6 HOH A 45 445 673 HOH HOH . EA 6 HOH A 46 446 676 HOH HOH . EA 6 HOH A 47 447 681 HOH HOH . EA 6 HOH A 48 448 682 HOH HOH . EA 6 HOH A 49 449 683 HOH HOH . EA 6 HOH A 50 450 685 HOH HOH . EA 6 HOH A 51 451 686 HOH HOH . EA 6 HOH A 52 452 689 HOH HOH . EA 6 HOH A 53 453 696 HOH HOH . EA 6 HOH A 54 454 697 HOH HOH . EA 6 HOH A 55 455 698 HOH HOH . EA 6 HOH A 56 456 699 HOH HOH . FA 6 HOH B 1 401 632 HOH HOH . FA 6 HOH B 2 402 671 HOH HOH . FA 6 HOH B 3 403 702 HOH HOH . FA 6 HOH B 4 404 665 HOH HOH . FA 6 HOH B 5 405 656 HOH HOH . FA 6 HOH B 6 406 660 HOH HOH . FA 6 HOH B 7 407 639 HOH HOH . FA 6 HOH B 8 408 666 HOH HOH . FA 6 HOH B 9 409 658 HOH HOH . FA 6 HOH B 10 410 646 HOH HOH . FA 6 HOH B 11 411 694 HOH HOH . FA 6 HOH B 12 412 678 HOH HOH . FA 6 HOH B 13 413 703 HOH HOH . FA 6 HOH B 14 414 695 HOH HOH . FA 6 HOH B 15 415 704 HOH HOH . FA 6 HOH B 16 416 687 HOH HOH . FA 6 HOH B 17 417 601 HOH HOH . FA 6 HOH B 18 418 602 HOH HOH . FA 6 HOH B 19 419 607 HOH HOH . FA 6 HOH B 20 420 611 HOH HOH . FA 6 HOH B 21 421 612 HOH HOH . FA 6 HOH B 22 422 613 HOH HOH . FA 6 HOH B 23 423 614 HOH HOH . FA 6 HOH B 24 424 615 HOH HOH . FA 6 HOH B 25 425 617 HOH HOH . FA 6 HOH B 26 426 619 HOH HOH . FA 6 HOH B 27 427 625 HOH HOH . FA 6 HOH B 28 428 626 HOH HOH . FA 6 HOH B 29 429 633 HOH HOH . FA 6 HOH B 30 430 638 HOH HOH . FA 6 HOH B 31 431 640 HOH HOH . FA 6 HOH B 32 432 641 HOH HOH . FA 6 HOH B 33 433 642 HOH HOH . FA 6 HOH B 34 434 643 HOH HOH . FA 6 HOH B 35 435 645 HOH HOH . FA 6 HOH B 36 436 647 HOH HOH . FA 6 HOH B 37 437 649 HOH HOH . FA 6 HOH B 38 438 651 HOH HOH . FA 6 HOH B 39 439 652 HOH HOH . FA 6 HOH B 40 440 653 HOH HOH . FA 6 HOH B 41 441 661 HOH HOH . FA 6 HOH B 42 442 667 HOH HOH . FA 6 HOH B 43 443 668 HOH HOH . FA 6 HOH B 44 444 674 HOH HOH . FA 6 HOH B 45 445 675 HOH HOH . FA 6 HOH B 46 446 677 HOH HOH . FA 6 HOH B 47 447 679 HOH HOH . FA 6 HOH B 48 448 690 HOH HOH . FA 6 HOH B 49 449 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . . . C 2 14.499 72.368 -0.736 1 30.09 ? C1 INS 301 A 1 HETATM 2 C C2 INS . . . C 2 14.667 73.722 -0.044 1 30.62 ? C2 INS 301 A 1 HETATM 3 C C3 INS . . . C 2 13.353 74.303 0.537 1 31.39 ? C3 INS 301 A 1 HETATM 4 C C4 INS . . . C 2 12.537 73.239 1.287 1 32.74 ? C4 INS 301 A 1 HETATM 5 C C5 INS . . . C 2 12.188 72.105 0.303 1 30.3 ? C5 INS 301 A 1 HETATM 6 C C6 INS . . . C 2 13.429 71.376 -0.234 1 29.61 ? C6 INS 301 A 1 HETATM 7 O O1 INS . . . C 2 15.72 71.863 -1.297 1 29.62 ? O1 INS 301 A 1 HETATM 8 O O2 INS . . . C 2 15.623 73.37 0.972 1 32.73 ? O2 INS 301 A 1 HETATM 9 O O3 INS . . . C 2 13.614 75.478 1.346 1 33.22 ? O3 INS 301 A 1 HETATM 10 O O4 INS . . . C 2 11.329 73.813 1.825 1 31.13 ? O4 INS 301 A 1 HETATM 11 O O5 INS . . . C 2 11.299 71.121 0.843 1 28.32 ? O5 INS 301 A 1 HETATM 12 O O6 INS . . . C 2 13.03 70.434 -1.226 1 30.68 ? O6 INS 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #