data_4XF7
#
_model_server_result.job_id            PcD9gzX29Dt2n1otQaU2yA 
_model_server_result.datetime_utc      '2024-11-24 17:27:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xf7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":301}' 
#
_entry.id    4XF7 
#
_exptl.entry_id    4XF7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XF7 
_cell.length_a            77.134 
_cell.length_b            81.176 
_cell.length_c            81.109 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XF7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,EA 1 1 
B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O SER 123 A SER 123 1_555 N I IOD . A IOD 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
covale ? covale2 Z I IOD . B IOD 309 1_555 DA I IOD . B IOD 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
metalc ? metalc1 A OE1 GLN 136 A GLN 136 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc2 D O2B ACP . A ACP 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc3 E MG MG . A MG 303 1_555 EA O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc4 E MG MG . A MG 303 1_555 EA O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 E MG MG . A MG 303 1_555 EA O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 E MG MG . A MG 303 1_555 EA O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc7 B OE1 GLN 136 B GLN 136 1_555 T MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc8 S O1B ACP . B ACP 302 1_555 T MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 T MG MG . B MG 303 1_555 FA O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc10 T MG MG . B MG 303 1_555 FA O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc11 T MG MG . B MG 303 1_555 FA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc12 T MG MG . B MG 303 1_555 FA O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                INS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MYO-INOSITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 INS sing 224 n n 
C1 C6 INS sing 225 n n 
C1 O1 INS sing 226 n n 
C1 H1 INS sing 227 n n 
C2 C3 INS sing 228 n n 
C2 O2 INS sing 229 n n 
C2 H2 INS sing 230 n n 
C3 C4 INS sing 231 n n 
C3 O3 INS sing 232 n n 
C3 H3 INS sing 233 n n 
C4 C5 INS sing 234 n n 
C4 O4 INS sing 235 n n 
C4 H4 INS sing 236 n n 
C5 C6 INS sing 237 n n 
C5 O5 INS sing 238 n n 
C5 H5 INS sing 239 n n 
C6 O6 INS sing 240 n n 
C6 H6 INS sing 241 n n 
O1 HO1 INS sing 242 n n 
O2 HO2 INS sing 243 n n 
O3 HO3 INS sing 244 n n 
O4 HO4 INS sing 245 n n 
O5 HO5 INS sing 246 n n 
O6 HO6 INS sing 247 n n 
#
_atom_sites.entry_id                     4XF7 
_atom_sites.fract_transf_matrix[1][1]    0.012964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012319 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 INS A 1 301 301 INS INS . 
D 3 ACP A 1 302 302 ACP ACP . 
E 4 MG A 1 303 401 MG MG . 
F 5 IOD A 1 304 501 IOD IOD . 
G 5 IOD A 1 305 503 IOD IOD . 
H 5 IOD A 1 306 505 IOD IOD . 
I 5 IOD A 1 307 507 IOD IOD . 
J 5 IOD A 1 308 508 IOD IOD . 
K 5 IOD A 1 309 509 IOD IOD . 
L 5 IOD A 1 310 510 IOD IOD . 
M 5 IOD A 1 311 512 IOD IOD . 
N 5 IOD A 1 312 513 IOD IOD . 
O 5 IOD A 1 313 519 IOD IOD . 
P 5 IOD A 1 314 521 IOD IOD . 
Q 5 IOD A 1 315 522 IOD IOD . 
R 2 INS B 1 301 301 INS INS . 
S 3 ACP B 1 302 302 ACP ACP . 
T 4 MG B 1 303 401 MG MG . 
U 5 IOD B 1 304 502 IOD IOD . 
V 5 IOD B 1 305 504 IOD IOD . 
W 5 IOD B 1 306 506 IOD IOD . 
X 5 IOD B 1 307 511 IOD IOD . 
Y 5 IOD B 1 308 514 IOD IOD . 
Z 5 IOD B 1 309 515 IOD IOD . 
AA 5 IOD B 1 310 516 IOD IOD . 
BA 5 IOD B 1 311 517 IOD IOD . 
CA 5 IOD B 1 312 518 IOD IOD . 
DA 5 IOD B 1 313 520 IOD IOD . 
EA 6 HOH A 1 401 635 HOH HOH . 
EA 6 HOH A 2 402 669 HOH HOH . 
EA 6 HOH A 3 403 654 HOH HOH . 
EA 6 HOH A 4 404 659 HOH HOH . 
EA 6 HOH A 5 405 648 HOH HOH . 
EA 6 HOH A 6 406 670 HOH HOH . 
EA 6 HOH A 7 407 664 HOH HOH . 
EA 6 HOH A 8 408 624 HOH HOH . 
EA 6 HOH A 9 409 637 HOH HOH . 
EA 6 HOH A 10 410 672 HOH HOH . 
EA 6 HOH A 11 411 650 HOH HOH . 
EA 6 HOH A 12 412 684 HOH HOH . 
EA 6 HOH A 13 413 691 HOH HOH . 
EA 6 HOH A 14 414 623 HOH HOH . 
EA 6 HOH A 15 415 630 HOH HOH . 
EA 6 HOH A 16 416 629 HOH HOH . 
EA 6 HOH A 17 417 688 HOH HOH . 
EA 6 HOH A 18 418 705 HOH HOH . 
EA 6 HOH A 19 419 700 HOH HOH . 
EA 6 HOH A 20 420 662 HOH HOH . 
EA 6 HOH A 21 421 693 HOH HOH . 
EA 6 HOH A 22 422 680 HOH HOH . 
EA 6 HOH A 23 423 692 HOH HOH . 
EA 6 HOH A 24 424 603 HOH HOH . 
EA 6 HOH A 25 425 604 HOH HOH . 
EA 6 HOH A 26 426 605 HOH HOH . 
EA 6 HOH A 27 427 606 HOH HOH . 
EA 6 HOH A 28 428 608 HOH HOH . 
EA 6 HOH A 29 429 609 HOH HOH . 
EA 6 HOH A 30 430 610 HOH HOH . 
EA 6 HOH A 31 431 616 HOH HOH . 
EA 6 HOH A 32 432 618 HOH HOH . 
EA 6 HOH A 33 433 620 HOH HOH . 
EA 6 HOH A 34 434 621 HOH HOH . 
EA 6 HOH A 35 435 622 HOH HOH . 
EA 6 HOH A 36 436 627 HOH HOH . 
EA 6 HOH A 37 437 628 HOH HOH . 
EA 6 HOH A 38 438 631 HOH HOH . 
EA 6 HOH A 39 439 634 HOH HOH . 
EA 6 HOH A 40 440 636 HOH HOH . 
EA 6 HOH A 41 441 644 HOH HOH . 
EA 6 HOH A 42 442 655 HOH HOH . 
EA 6 HOH A 43 443 657 HOH HOH . 
EA 6 HOH A 44 444 663 HOH HOH . 
EA 6 HOH A 45 445 673 HOH HOH . 
EA 6 HOH A 46 446 676 HOH HOH . 
EA 6 HOH A 47 447 681 HOH HOH . 
EA 6 HOH A 48 448 682 HOH HOH . 
EA 6 HOH A 49 449 683 HOH HOH . 
EA 6 HOH A 50 450 685 HOH HOH . 
EA 6 HOH A 51 451 686 HOH HOH . 
EA 6 HOH A 52 452 689 HOH HOH . 
EA 6 HOH A 53 453 696 HOH HOH . 
EA 6 HOH A 54 454 697 HOH HOH . 
EA 6 HOH A 55 455 698 HOH HOH . 
EA 6 HOH A 56 456 699 HOH HOH . 
FA 6 HOH B 1 401 632 HOH HOH . 
FA 6 HOH B 2 402 671 HOH HOH . 
FA 6 HOH B 3 403 702 HOH HOH . 
FA 6 HOH B 4 404 665 HOH HOH . 
FA 6 HOH B 5 405 656 HOH HOH . 
FA 6 HOH B 6 406 660 HOH HOH . 
FA 6 HOH B 7 407 639 HOH HOH . 
FA 6 HOH B 8 408 666 HOH HOH . 
FA 6 HOH B 9 409 658 HOH HOH . 
FA 6 HOH B 10 410 646 HOH HOH . 
FA 6 HOH B 11 411 694 HOH HOH . 
FA 6 HOH B 12 412 678 HOH HOH . 
FA 6 HOH B 13 413 703 HOH HOH . 
FA 6 HOH B 14 414 695 HOH HOH . 
FA 6 HOH B 15 415 704 HOH HOH . 
FA 6 HOH B 16 416 687 HOH HOH . 
FA 6 HOH B 17 417 601 HOH HOH . 
FA 6 HOH B 18 418 602 HOH HOH . 
FA 6 HOH B 19 419 607 HOH HOH . 
FA 6 HOH B 20 420 611 HOH HOH . 
FA 6 HOH B 21 421 612 HOH HOH . 
FA 6 HOH B 22 422 613 HOH HOH . 
FA 6 HOH B 23 423 614 HOH HOH . 
FA 6 HOH B 24 424 615 HOH HOH . 
FA 6 HOH B 25 425 617 HOH HOH . 
FA 6 HOH B 26 426 619 HOH HOH . 
FA 6 HOH B 27 427 625 HOH HOH . 
FA 6 HOH B 28 428 626 HOH HOH . 
FA 6 HOH B 29 429 633 HOH HOH . 
FA 6 HOH B 30 430 638 HOH HOH . 
FA 6 HOH B 31 431 640 HOH HOH . 
FA 6 HOH B 32 432 641 HOH HOH . 
FA 6 HOH B 33 433 642 HOH HOH . 
FA 6 HOH B 34 434 643 HOH HOH . 
FA 6 HOH B 35 435 645 HOH HOH . 
FA 6 HOH B 36 436 647 HOH HOH . 
FA 6 HOH B 37 437 649 HOH HOH . 
FA 6 HOH B 38 438 651 HOH HOH . 
FA 6 HOH B 39 439 652 HOH HOH . 
FA 6 HOH B 40 440 653 HOH HOH . 
FA 6 HOH B 41 441 661 HOH HOH . 
FA 6 HOH B 42 442 667 HOH HOH . 
FA 6 HOH B 43 443 668 HOH HOH . 
FA 6 HOH B 44 444 674 HOH HOH . 
FA 6 HOH B 45 445 675 HOH HOH . 
FA 6 HOH B 46 446 677 HOH HOH . 
FA 6 HOH B 47 447 679 HOH HOH . 
FA 6 HOH B 48 448 690 HOH HOH . 
FA 6 HOH B 49 449 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 INS . . . R 2 11.18 47.221 -11.94 1 31.29 ? C1 INS 301 B 1 
HETATM 2 C C2 INS . . . R 2 11.252 45.981 -12.834 1 31.12 ? C2 INS 301 B 1 
HETATM 3 C C3 INS . . . R 2 10.092 45.908 -13.829 1 31.72 ? C3 INS 301 B 1 
HETATM 4 C C4 INS . . . R 2 10.036 47.153 -14.713 1 32.5 ? C4 INS 301 B 1 
HETATM 5 C C5 INS . . . R 2 9.899 48.383 -13.81 1 31.38 ? C5 INS 301 B 1 
HETATM 6 C C6 INS . . . R 2 11.075 48.469 -12.837 1 30.48 ? C6 INS 301 B 1 
HETATM 7 O O1 INS . . . R 2 12.366 47.351 -11.138 1 27.78 ? O1 INS 301 B 1 
HETATM 8 O O2 INS . . . R 2 12.465 46.069 -13.564 1 32.38 ? O2 INS 301 B 1 
HETATM 9 O O3 INS . . . R 2 10.183 44.704 -14.597 1 33.29 ? O3 INS 301 B 1 
HETATM 10 O O4 INS . . . R 2 8.878 47.097 -15.533 1 31.57 ? O4 INS 301 B 1 
HETATM 11 O O5 INS . . . R 2 9.811 49.589 -14.596 1 33.11 ? O5 INS 301 B 1 
HETATM 12 O O6 INS . . . R 2 10.883 49.656 -12.055 1 30.49 ? O6 INS 301 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           12 
#