data_4XFZ # _model_server_result.job_id uhU1iCPDTrufjtHXBo_JPQ _model_server_result.datetime_utc '2024-10-26 18:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 4XFZ # _exptl.entry_id 4XFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.522 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XFZ _cell.length_a 92.181 _cell.length_b 92.181 _cell.length_c 56.976 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 198 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 218 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 218 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.052 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H27 N3 O2' _chem_comp.formula_weight 425.522 _chem_comp.id 1B0 _chem_comp.mon_nstd_flag . _chem_comp.name N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 1B0 doub 1 n n C23 N4 1B0 sing 2 n n C23 C25 1B0 sing 3 n n N4 C5 1B0 sing 4 n n C5 C13 1B0 sing 5 n n C5 C6 1B0 sing 6 n n C13 N15 1B0 sing 7 n n C13 O14 1B0 doub 8 n n N15 C17 1B0 sing 9 n n N15 C16 1B0 sing 10 n n C17 C22 1B0 sing 11 n y C17 C18 1B0 doub 12 n y C22 C21 1B0 doub 13 n y C21 C20 1B0 sing 14 n y C20 C19 1B0 doub 15 n y C19 C18 1B0 sing 16 n y C6 C7 1B0 sing 17 n n C7 C12 1B0 sing 18 n y C7 C8 1B0 doub 19 n y C12 C11 1B0 doub 20 n y C11 C10 1B0 sing 21 n y C10 C9 1B0 doub 22 n y C9 C8 1B0 sing 23 n y C25 C1 1B0 sing 24 n n C1 C26 1B0 sing 25 n y C1 C2 1B0 doub 26 n y C26 C31 1B0 sing 27 n y C26 C27 1B0 doub 28 n y C31 C30 1B0 doub 29 n y C30 C29 1B0 sing 30 n y C29 C28 1B0 doub 31 n y C28 C27 1B0 sing 32 n y C27 N3 1B0 sing 33 n y N3 C2 1B0 sing 34 n y C2 C32 1B0 sing 35 n n N4 H4 1B0 sing 36 n n C25 H251 1B0 sing 37 n n C25 H252 1B0 sing 38 n n C5 H5 1B0 sing 39 n n C6 H61C 1B0 sing 40 n n C6 H62C 1B0 sing 41 n n C16 H161 1B0 sing 42 n n C16 H162 1B0 sing 43 n n C16 H163 1B0 sing 44 n n C22 H22 1B0 sing 45 n n C18 H18 1B0 sing 46 n n C21 H21 1B0 sing 47 n n C20 H20 1B0 sing 48 n n C19 H19 1B0 sing 49 n n C12 H12 1B0 sing 50 n n C8 H8 1B0 sing 51 n n C11 H11 1B0 sing 52 n n C10 H10 1B0 sing 53 n n C9 H9 1B0 sing 54 n n C31 H31 1B0 sing 55 n n C30 H30 1B0 sing 56 n n C29 H29 1B0 sing 57 n n C28 H28 1B0 sing 58 n n N3 H3 1B0 sing 59 n n C32 H321 1B0 sing 60 n n C32 H322 1B0 sing 61 n n C32 H323 1B0 sing 62 n n # _atom_sites.entry_id 4XFZ _atom_sites.fract_transf_matrix[1][1] 0.010848 _atom_sites.fract_transf_matrix[1][2] 0.006263 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 301 301 IOD IOD . C 2 IOD A 1 302 302 IOD IOD . D 2 IOD A 1 303 303 IOD IOD . E 2 IOD A 1 304 304 IOD IOD . F 2 IOD A 1 305 305 IOD IOD . G 2 IOD A 1 306 306 IOD IOD . H 3 CL A 1 307 307 CL CL . I 3 CL A 1 308 308 CL CL . J 4 1B0 A 1 309 500 1B0 1B0 . K 5 HOH A 1 401 428 HOH HOH . K 5 HOH A 2 402 425 HOH HOH . K 5 HOH A 3 403 420 HOH HOH . K 5 HOH A 4 404 423 HOH HOH . K 5 HOH A 5 405 424 HOH HOH . K 5 HOH A 6 406 401 HOH HOH . K 5 HOH A 7 407 422 HOH HOH . K 5 HOH A 8 408 413 HOH HOH . K 5 HOH A 9 409 409 HOH HOH . K 5 HOH A 10 410 406 HOH HOH . K 5 HOH A 11 411 417 HOH HOH . K 5 HOH A 12 412 416 HOH HOH . K 5 HOH A 13 413 419 HOH HOH . K 5 HOH A 14 414 426 HOH HOH . K 5 HOH A 15 415 411 HOH HOH . K 5 HOH A 16 416 407 HOH HOH . K 5 HOH A 17 417 402 HOH HOH . K 5 HOH A 18 418 403 HOH HOH . K 5 HOH A 19 419 404 HOH HOH . K 5 HOH A 20 420 405 HOH HOH . K 5 HOH A 21 421 408 HOH HOH . K 5 HOH A 22 422 410 HOH HOH . K 5 HOH A 23 423 412 HOH HOH . K 5 HOH A 24 424 414 HOH HOH . K 5 HOH A 25 425 415 HOH HOH . K 5 HOH A 26 426 418 HOH HOH . K 5 HOH A 27 427 421 HOH HOH . K 5 HOH A 28 428 427 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 1B0 . . . J 4 -11.536 -28.95 0.334 1 58.05 ? O24 1B0 309 A 1 HETATM 2 C C23 1B0 . . . J 4 -11.32 -27.776 0.092 1 51.71 ? C23 1B0 309 A 1 HETATM 3 N N4 1B0 . . . J 4 -10.49 -27.016 0.782 1 50.71 ? N4 1B0 309 A 1 HETATM 4 C C5 1B0 . . . J 4 -9.732 -27.526 1.918 1 52.82 ? C5 1B0 309 A 1 HETATM 5 C C13 1B0 . . . J 4 -10.559 -27.247 3.178 1 55.29 ? C13 1B0 309 A 1 HETATM 6 N N15 1B0 . . . J 4 -10.479 -28.085 4.219 1 58.12 ? N15 1B0 309 A 1 HETATM 7 C C17 1B0 . . . J 4 -9.741 -29.228 4.154 1 61.15 ? C17 1B0 309 A 1 HETATM 8 C C22 1B0 . . . J 4 -8.479 -29.282 4.718 1 60.94 ? C22 1B0 309 A 1 HETATM 9 C C21 1B0 . . . J 4 -7.72 -30.462 4.646 1 60.65 ? C21 1B0 309 A 1 HETATM 10 C C20 1B0 . . . J 4 -8.246 -31.571 3.996 1 60.96 ? C20 1B0 309 A 1 HETATM 11 C C19 1B0 . . . J 4 -9.52 -31.533 3.428 1 51.9 ? C19 1B0 309 A 1 HETATM 12 C C18 1B0 . . . J 4 -10.255 -30.378 3.527 1 59.04 ? C18 1B0 309 A 1 HETATM 13 C C16 1B0 . . . J 4 -11.268 -27.836 5.444 1 58.9 ? C16 1B0 309 A 1 HETATM 14 O O14 1B0 . . . J 4 -11.209 -26.212 3.199 1 64.2 ? O14 1B0 309 A 1 HETATM 15 C C6 1B0 . . . J 4 -8.406 -26.727 2.032 1 61.03 ? C6 1B0 309 A 1 HETATM 16 C C7 1B0 . . . J 4 -7.448 -27.204 1.021 1 60.45 ? C7 1B0 309 A 1 HETATM 17 C C12 1B0 . . . J 4 -6.504 -28.208 1.321 1 56.58 ? C12 1B0 309 A 1 HETATM 18 C C11 1B0 . . . J 4 -5.625 -28.655 0.351 1 62.61 ? C11 1B0 309 A 1 HETATM 19 C C10 1B0 . . . J 4 -5.647 -28.087 -0.927 1 61.5 ? C10 1B0 309 A 1 HETATM 20 C C9 1B0 . . . J 4 -6.561 -27.106 -1.253 1 58.63 ? C9 1B0 309 A 1 HETATM 21 C C8 1B0 . . . J 4 -7.451 -26.661 -0.276 1 59.16 ? C8 1B0 309 A 1 HETATM 22 C C25 1B0 . . . J 4 -12.047 -27.089 -1.055 1 50.05 ? C25 1B0 309 A 1 HETATM 23 C C1 1B0 . . . J 4 -11.943 -27.831 -2.419 1 51.18 ? C1 1B0 309 A 1 HETATM 24 C C26 1B0 . . . J 4 -12.822 -28.89 -2.835 1 55.03 ? C26 1B0 309 A 1 HETATM 25 C C31 1B0 . . . J 4 -13.847 -29.601 -2.227 1 54.62 ? C31 1B0 309 A 1 HETATM 26 C C30 1B0 . . . J 4 -14.462 -30.661 -2.898 1 57.6 ? C30 1B0 309 A 1 HETATM 27 C C29 1B0 . . . J 4 -14.084 -30.955 -4.192 1 59.36 ? C29 1B0 309 A 1 HETATM 28 C C28 1B0 . . . J 4 -13.095 -30.227 -4.824 1 59.84 ? C28 1B0 309 A 1 HETATM 29 C C27 1B0 . . . J 4 -12.47 -29.22 -4.134 1 60.84 ? C27 1B0 309 A 1 HETATM 30 N N3 1B0 . . . J 4 -11.434 -28.373 -4.502 1 62.26 ? N3 1B0 309 A 1 HETATM 31 C C2 1B0 . . . J 4 -11.133 -27.524 -3.494 1 54.99 ? C2 1B0 309 A 1 HETATM 32 C C32 1B0 . . . J 4 -10.05 -26.48 -3.62 1 58.4 ? C32 1B0 309 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 458 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #