data_4XG4 # _model_server_result.job_id hhQoyFQcEfvyPqGT3qDrQQ _model_server_result.datetime_utc '2024-10-12 15:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4XG4 # _exptl.entry_id 4XG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.525 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (3R)-1-{[1-(5-fluoro-2-{[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]amino}pyrimidin-4-yl)-4-methyl-1H-pyrrol-3-yl]methyl}pyrrolidin-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 2.7.10.2 # _cell.angle_alpha 90 _cell.angle_beta 98.8 _cell.angle_gamma 90 _cell.entry_id 4XG4 _cell.length_a 40.219 _cell.length_b 85.056 _cell.length_c 41.749 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H30 F N5 O3' _chem_comp.formula_weight 455.525 _chem_comp.id X4G _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-1-{[1-(5-fluoro-2-{[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]amino}pyrimidin-4-yl)-4-methyl-1H-pyrrol-3-yl]methyl}pyrrolidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO NBF X4G sing 376 n n CAO CAN X4G sing 377 n n CAP NBF X4G sing 378 n n CAP CBA X4G sing 379 n n CAC CAX X4G sing 380 n n NBF CAQ X4G sing 381 n n CBA CAX X4G sing 382 n y CBA CAK X4G doub 383 n y CAN CBE X4G sing 384 n n CAX CAJ X4G doub 385 n y CAL CAM X4G sing 386 n n CAL OAD X4G sing 387 n n CAK NBG X4G sing 388 n y CAM OAU X4G sing 389 n n CAJ NBG X4G sing 390 n y CAQ CBE X4G sing 391 n n CAB CAW X4G sing 392 n n NBG C4 X4G sing 393 n n CBE OAE X4G sing 394 n n CAW CAI X4G doub 395 n y CAW CBC X4G sing 396 n y OAU CBC X4G sing 397 n n C4 N3 X4G doub 398 n y C4 C5 X4G sing 399 n y CAI CAZ X4G sing 400 n y N3 C2 X4G sing 401 n y CBC CAV X4G doub 402 n y F5 C5 X4G sing 403 n n C5 C6 X4G doub 404 n y CAZ CAH X4G doub 405 n y CAZ NAT X4G sing 406 n n CAV CAH X4G sing 407 n y CAV CAA X4G sing 408 n n C2 NAT X4G sing 409 n n C2 N1 X4G doub 410 n y C6 N1 X4G sing 411 n y C6 H1 X4G sing 412 n n OAE H2 X4G sing 413 n n CBE H3 X4G sing 414 n n CAQ H4 X4G sing 415 n n CAQ H5 X4G sing 416 n n CAN H6 X4G sing 417 n n CAN H7 X4G sing 418 n n CAO H8 X4G sing 419 n n CAO H9 X4G sing 420 n n CAP H11 X4G sing 421 n n CAP H12 X4G sing 422 n n CAK H13 X4G sing 423 n n CAC H14 X4G sing 424 n n CAC H15 X4G sing 425 n n CAC H16 X4G sing 426 n n CAJ H17 X4G sing 427 n n NAT H18 X4G sing 428 n n CAI H19 X4G sing 429 n n CAB H20 X4G sing 430 n n CAB H21 X4G sing 431 n n CAB H22 X4G sing 432 n n CAH H23 X4G sing 433 n n CAA H24 X4G sing 434 n n CAA H25 X4G sing 435 n n CAA H26 X4G sing 436 n n CAM H27 X4G sing 437 n n CAM H28 X4G sing 438 n n CAL H29 X4G sing 439 n n CAL H30 X4G sing 440 n n OAD H31 X4G sing 441 n n # _atom_sites.entry_id 4XG4 _atom_sites.fract_transf_matrix[1][1] 0.024864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003848 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X4G A 1 701 1 X4G DRG . C 3 HOH A 1 801 16 HOH HOH . C 3 HOH A 2 802 10 HOH HOH . C 3 HOH A 3 803 62 HOH HOH . C 3 HOH A 4 804 22 HOH HOH . C 3 HOH A 5 805 48 HOH HOH . C 3 HOH A 6 806 34 HOH HOH . C 3 HOH A 7 807 56 HOH HOH . C 3 HOH A 8 808 47 HOH HOH . C 3 HOH A 9 809 8 HOH HOH . C 3 HOH A 10 810 4 HOH HOH . C 3 HOH A 11 811 52 HOH HOH . C 3 HOH A 12 812 17 HOH HOH . C 3 HOH A 13 813 50 HOH HOH . C 3 HOH A 14 814 20 HOH HOH . C 3 HOH A 15 815 58 HOH HOH . C 3 HOH A 16 816 57 HOH HOH . C 3 HOH A 17 817 60 HOH HOH . C 3 HOH A 18 818 55 HOH HOH . C 3 HOH A 19 819 36 HOH HOH . C 3 HOH A 20 820 68 HOH HOH . C 3 HOH A 21 821 26 HOH HOH . C 3 HOH A 22 822 42 HOH HOH . C 3 HOH A 23 823 49 HOH HOH . C 3 HOH A 24 824 43 HOH HOH . C 3 HOH A 25 825 19 HOH HOH . C 3 HOH A 26 826 1 HOH HOH . C 3 HOH A 27 827 2 HOH HOH . C 3 HOH A 28 828 3 HOH HOH . C 3 HOH A 29 829 5 HOH HOH . C 3 HOH A 30 830 6 HOH HOH . C 3 HOH A 31 831 7 HOH HOH . C 3 HOH A 32 832 9 HOH HOH . C 3 HOH A 33 833 11 HOH HOH . C 3 HOH A 34 834 12 HOH HOH . C 3 HOH A 35 835 13 HOH HOH . C 3 HOH A 36 836 14 HOH HOH . C 3 HOH A 37 837 15 HOH HOH . C 3 HOH A 38 838 18 HOH HOH . C 3 HOH A 39 839 21 HOH HOH . C 3 HOH A 40 840 23 HOH HOH . C 3 HOH A 41 841 24 HOH HOH . C 3 HOH A 42 842 25 HOH HOH . C 3 HOH A 43 843 27 HOH HOH . C 3 HOH A 44 844 28 HOH HOH . C 3 HOH A 45 845 29 HOH HOH . C 3 HOH A 46 846 30 HOH HOH . C 3 HOH A 47 847 31 HOH HOH . C 3 HOH A 48 848 32 HOH HOH . C 3 HOH A 49 849 33 HOH HOH . C 3 HOH A 50 850 35 HOH HOH . C 3 HOH A 51 851 37 HOH HOH . C 3 HOH A 52 852 38 HOH HOH . C 3 HOH A 53 853 39 HOH HOH . C 3 HOH A 54 854 40 HOH HOH . C 3 HOH A 55 855 41 HOH HOH . C 3 HOH A 56 856 44 HOH HOH . C 3 HOH A 57 857 45 HOH HOH . C 3 HOH A 58 858 46 HOH HOH . C 3 HOH A 59 859 51 HOH HOH . C 3 HOH A 60 860 53 HOH HOH . C 3 HOH A 61 861 54 HOH HOH . C 3 HOH A 62 862 59 HOH HOH . C 3 HOH A 63 863 61 HOH HOH . C 3 HOH A 64 864 63 HOH HOH . C 3 HOH A 65 865 64 HOH HOH . C 3 HOH A 66 866 65 HOH HOH . C 3 HOH A 67 867 66 HOH HOH . C 3 HOH A 68 868 67 HOH HOH . C 3 HOH A 69 869 69 HOH HOH . C 3 HOH A 70 870 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X4G . . . B 2 12.64 -1.501 12.504 1 34.16 ? C4 X4G 701 A 1 HETATM 2 C C5 X4G . . . B 2 11.511 -1.1 13.25 1 34.36 ? C5 X4G 701 A 1 HETATM 3 C C6 X4G . . . B 2 11.676 -0.108 14.204 1 32.87 ? C6 X4G 701 A 1 HETATM 4 N N1 X4G . . . B 2 12.866 0.428 14.422 1 33.3 ? N1 X4G 701 A 1 HETATM 5 N N3 X4G . . . B 2 13.834 -0.919 12.809 1 34.04 ? N3 X4G 701 A 1 HETATM 6 O OAE X4G . . . B 2 17.637 -6.196 12.125 1 39.24 ? OAE X4G 701 A 1 HETATM 7 C CBE X4G . . . B 2 16.425 -6.759 11.653 1 37.86 ? CBE X4G 701 A 1 HETATM 8 C CAQ X4G . . . B 2 15.496 -5.605 11.33 1 36.83 ? CAQ X4G 701 A 1 HETATM 9 C CAN X4G . . . B 2 16.698 -7.461 10.32 1 37.15 ? CAN X4G 701 A 1 HETATM 10 C CAO X4G . . . B 2 15.905 -6.657 9.279 1 36.07 ? CAO X4G 701 A 1 HETATM 11 N NBF X4G . . . B 2 14.869 -5.947 10.048 1 35.3 ? NBF X4G 701 A 1 HETATM 12 C CAP X4G . . . B 2 14.431 -4.735 9.352 1 34.22 ? CAP X4G 701 A 1 HETATM 13 C CBA X4G . . . B 2 13.434 -3.965 10.21 1 34.27 ? CBA X4G 701 A 1 HETATM 14 C CAK X4G . . . B 2 13.737 -2.956 11.006 1 34.55 ? CAK X4G 701 A 1 HETATM 15 C CAX X4G . . . B 2 12.068 -4.143 10.322 1 34.24 ? CAX X4G 701 A 1 HETATM 16 C CAC X4G . . . B 2 11.228 -5.203 9.594 1 34.76 ? CAC X4G 701 A 1 HETATM 17 C CAJ X4G . . . B 2 11.589 -3.254 11.181 1 33.67 ? CAJ X4G 701 A 1 HETATM 18 N NBG X4G . . . B 2 12.623 -2.492 11.59 1 34.91 ? NBG X4G 701 A 1 HETATM 19 F F5 X4G . . . B 2 10.265 -1.598 13.076 1 35.13 ? F5 X4G 701 A 1 HETATM 20 C C2 X4G . . . B 2 13.966 0.052 13.75 1 33.6 ? C2 X4G 701 A 1 HETATM 21 N NAT X4G . . . B 2 15.112 0.68 14.105 1 35.26 ? NAT X4G 701 A 1 HETATM 22 C CAZ X4G . . . B 2 16.369 0.459 13.654 1 38.46 ? CAZ X4G 701 A 1 HETATM 23 C CAI X4G . . . B 2 16.737 -0.591 12.805 1 39.54 ? CAI X4G 701 A 1 HETATM 24 C CAW X4G . . . B 2 18.065 -0.746 12.384 1 41.78 ? CAW X4G 701 A 1 HETATM 25 C CAB X4G . . . B 2 18.459 -1.903 11.459 1 41.48 ? CAB X4G 701 A 1 HETATM 26 C CAH X4G . . . B 2 17.374 1.341 14.072 1 40.63 ? CAH X4G 701 A 1 HETATM 27 C CAV X4G . . . B 2 18.699 1.19 13.667 1 42.06 ? CAV X4G 701 A 1 HETATM 28 C CAA X4G . . . B 2 19.747 2.188 14.163 1 42.22 ? CAA X4G 701 A 1 HETATM 29 C CBC X4G . . . B 2 19.044 0.145 12.812 1 42.22 ? CBC X4G 701 A 1 HETATM 30 O OAU X4G . . . B 2 20.325 -0.019 12.403 1 45.04 ? OAU X4G 701 A 1 HETATM 31 C CAM X4G . . . B 2 20.553 0.675 11.179 1 46.52 ? CAM X4G 701 A 1 HETATM 32 C CAL X4G . . . B 2 21.967 0.25 10.782 1 50.89 ? CAL X4G 701 A 1 HETATM 33 O OAD X4G . . . B 2 22.903 0.72 11.77 1 54.81 ? OAD X4G 701 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #