data_4XGM
#
_model_server_result.job_id            eNfL0TEdvzLiPIRaMfsaIA 
_model_server_result.datetime_utc      '2025-07-01 18:01:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xgm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    4XGM 
#
_exptl.entry_id    4XGM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XGM 
_cell.length_a            99.04 
_cell.length_b            99.04 
_cell.length_c            50.61 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XGM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 144 A CYS 348 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc2 A SG CYS 147 A CYS 351 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc3 A NE2 HIS 353 A HIS 557 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc4 A SG CYS 374 A CYS 578 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XGM 
_atom_sites.fract_transf_matrix[1][1]    0.010097 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010097 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 1 ZN ZN . 
C 3 GOL A 1 602 1 GOL GOL . 
D 3 GOL A 1 603 2 GOL GOL . 
E 4 HOH A 1 701 130 HOH HOH . 
E 4 HOH A 2 702 54 HOH HOH . 
E 4 HOH A 3 703 118 HOH HOH . 
E 4 HOH A 4 704 104 HOH HOH . 
E 4 HOH A 5 705 42 HOH HOH . 
E 4 HOH A 6 706 136 HOH HOH . 
E 4 HOH A 7 707 41 HOH HOH . 
E 4 HOH A 8 708 33 HOH HOH . 
E 4 HOH A 9 709 111 HOH HOH . 
E 4 HOH A 10 710 150 HOH HOH . 
E 4 HOH A 11 711 125 HOH HOH . 
E 4 HOH A 12 712 124 HOH HOH . 
E 4 HOH A 13 713 120 HOH HOH . 
E 4 HOH A 14 714 29 HOH HOH . 
E 4 HOH A 15 715 21 HOH HOH . 
E 4 HOH A 16 716 102 HOH HOH . 
E 4 HOH A 17 717 71 HOH HOH . 
E 4 HOH A 18 718 26 HOH HOH . 
E 4 HOH A 19 719 128 HOH HOH . 
E 4 HOH A 20 720 15 HOH HOH . 
E 4 HOH A 21 721 135 HOH HOH . 
E 4 HOH A 22 722 151 HOH HOH . 
E 4 HOH A 23 723 38 HOH HOH . 
E 4 HOH A 24 724 117 HOH HOH . 
E 4 HOH A 25 725 31 HOH HOH . 
E 4 HOH A 26 726 103 HOH HOH . 
E 4 HOH A 27 727 60 HOH HOH . 
E 4 HOH A 28 728 80 HOH HOH . 
E 4 HOH A 29 729 79 HOH HOH . 
E 4 HOH A 30 730 17 HOH HOH . 
E 4 HOH A 31 731 28 HOH HOH . 
E 4 HOH A 32 732 56 HOH HOH . 
E 4 HOH A 33 733 30 HOH HOH . 
E 4 HOH A 34 734 88 HOH HOH . 
E 4 HOH A 35 735 65 HOH HOH . 
E 4 HOH A 36 736 74 HOH HOH . 
E 4 HOH A 37 737 39 HOH HOH . 
E 4 HOH A 38 738 123 HOH HOH . 
E 4 HOH A 39 739 24 HOH HOH . 
E 4 HOH A 40 740 3 HOH HOH . 
E 4 HOH A 41 741 73 HOH HOH . 
E 4 HOH A 42 742 48 HOH HOH . 
E 4 HOH A 43 743 6 HOH HOH . 
E 4 HOH A 44 744 27 HOH HOH . 
E 4 HOH A 45 745 44 HOH HOH . 
E 4 HOH A 46 746 149 HOH HOH . 
E 4 HOH A 47 747 8 HOH HOH . 
E 4 HOH A 48 748 94 HOH HOH . 
E 4 HOH A 49 749 97 HOH HOH . 
E 4 HOH A 50 750 152 HOH HOH . 
E 4 HOH A 51 751 46 HOH HOH . 
E 4 HOH A 52 752 9 HOH HOH . 
E 4 HOH A 53 753 153 HOH HOH . 
E 4 HOH A 54 754 72 HOH HOH . 
E 4 HOH A 55 755 43 HOH HOH . 
E 4 HOH A 56 756 91 HOH HOH . 
E 4 HOH A 57 757 7 HOH HOH . 
E 4 HOH A 58 758 89 HOH HOH . 
E 4 HOH A 59 759 1 HOH HOH . 
E 4 HOH A 60 760 12 HOH HOH . 
E 4 HOH A 61 761 49 HOH HOH . 
E 4 HOH A 62 762 37 HOH HOH . 
E 4 HOH A 63 763 59 HOH HOH . 
E 4 HOH A 64 764 84 HOH HOH . 
E 4 HOH A 65 765 64 HOH HOH . 
E 4 HOH A 66 766 23 HOH HOH . 
E 4 HOH A 67 767 35 HOH HOH . 
E 4 HOH A 68 768 86 HOH HOH . 
E 4 HOH A 69 769 45 HOH HOH . 
E 4 HOH A 70 770 78 HOH HOH . 
E 4 HOH A 71 771 127 HOH HOH . 
E 4 HOH A 72 772 40 HOH HOH . 
E 4 HOH A 73 773 144 HOH HOH . 
E 4 HOH A 74 774 16 HOH HOH . 
E 4 HOH A 75 775 2 HOH HOH . 
E 4 HOH A 76 776 122 HOH HOH . 
E 4 HOH A 77 777 50 HOH HOH . 
E 4 HOH A 78 778 22 HOH HOH . 
E 4 HOH A 79 779 70 HOH HOH . 
E 4 HOH A 80 780 5 HOH HOH . 
E 4 HOH A 81 781 62 HOH HOH . 
E 4 HOH A 82 782 4 HOH HOH . 
E 4 HOH A 83 783 55 HOH HOH . 
E 4 HOH A 84 784 20 HOH HOH . 
E 4 HOH A 85 785 82 HOH HOH . 
E 4 HOH A 86 786 115 HOH HOH . 
E 4 HOH A 87 787 95 HOH HOH . 
E 4 HOH A 88 788 110 HOH HOH . 
E 4 HOH A 89 789 25 HOH HOH . 
E 4 HOH A 90 790 10 HOH HOH . 
E 4 HOH A 91 791 132 HOH HOH . 
E 4 HOH A 92 792 34 HOH HOH . 
E 4 HOH A 93 793 106 HOH HOH . 
E 4 HOH A 94 794 99 HOH HOH . 
E 4 HOH A 95 795 52 HOH HOH . 
E 4 HOH A 96 796 143 HOH HOH . 
E 4 HOH A 97 797 32 HOH HOH . 
E 4 HOH A 98 798 19 HOH HOH . 
E 4 HOH A 99 799 67 HOH HOH . 
E 4 HOH A 100 800 47 HOH HOH . 
E 4 HOH A 101 801 13 HOH HOH . 
E 4 HOH A 102 802 119 HOH HOH . 
E 4 HOH A 103 803 14 HOH HOH . 
E 4 HOH A 104 804 146 HOH HOH . 
E 4 HOH A 105 805 85 HOH HOH . 
E 4 HOH A 106 806 81 HOH HOH . 
E 4 HOH A 107 807 58 HOH HOH . 
E 4 HOH A 108 808 114 HOH HOH . 
E 4 HOH A 109 809 61 HOH HOH . 
E 4 HOH A 110 810 100 HOH HOH . 
E 4 HOH A 111 811 147 HOH HOH . 
E 4 HOH A 112 812 53 HOH HOH . 
E 4 HOH A 113 813 51 HOH HOH . 
E 4 HOH A 114 814 142 HOH HOH . 
E 4 HOH A 115 815 76 HOH HOH . 
E 4 HOH A 116 816 112 HOH HOH . 
E 4 HOH A 117 817 63 HOH HOH . 
E 4 HOH A 118 818 69 HOH HOH . 
E 4 HOH A 119 819 11 HOH HOH . 
E 4 HOH A 120 820 133 HOH HOH . 
E 4 HOH A 121 821 116 HOH HOH . 
E 4 HOH A 122 822 98 HOH HOH . 
E 4 HOH A 123 823 107 HOH HOH . 
E 4 HOH A 124 824 90 HOH HOH . 
E 4 HOH A 125 825 141 HOH HOH . 
E 4 HOH A 126 826 101 HOH HOH . 
E 4 HOH A 127 827 93 HOH HOH . 
E 4 HOH A 128 828 68 HOH HOH . 
E 4 HOH A 129 829 108 HOH HOH . 
E 4 HOH A 130 830 77 HOH HOH . 
E 4 HOH A 131 831 36 HOH HOH . 
E 4 HOH A 132 832 92 HOH HOH . 
E 4 HOH A 133 833 83 HOH HOH . 
E 4 HOH A 134 834 137 HOH HOH . 
E 4 HOH A 135 835 75 HOH HOH . 
E 4 HOH A 136 836 96 HOH HOH . 
E 4 HOH A 137 837 87 HOH HOH . 
E 4 HOH A 138 838 57 HOH HOH . 
E 4 HOH A 139 839 113 HOH HOH . 
E 4 HOH A 140 840 66 HOH HOH . 
E 4 HOH A 141 841 105 HOH HOH . 
E 4 HOH A 142 842 140 HOH HOH . 
E 4 HOH A 143 843 131 HOH HOH . 
E 4 HOH A 144 844 109 HOH HOH . 
E 4 HOH A 145 845 134 HOH HOH . 
E 4 HOH A 146 846 138 HOH HOH . 
E 4 HOH A 147 847 148 HOH HOH . 
E 4 HOH A 148 848 126 HOH HOH . 
E 4 HOH A 149 849 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 73.911 0.366 26.141 1 75.72 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . D 3 73.979 0.109 24.753 1 69.73 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . D 3 73.206 1.699 26.397 1 76.78 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . D 3 72.469 1.661 27.603 1 76.92 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . D 3 74.24 2.816 26.466 1 73.57 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . D 3 74.741 3.05 25.17 1 72.56 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#