data_4XGU
#
_model_server_result.job_id            44IUuMCiNVJ6gJR49CRT5A 
_model_server_result.datetime_utc      '2024-11-09 02:13:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":503}' 
#
_entry.id    4XGU 
#
_exptl.entry_id    4XGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XGU 
_cell.length_a            126.71 
_cell.length_b            240.97 
_cell.length_c            197.95 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_577 x,-y+2,-z+2 1 0 0 0 -1 0 0 0 -1 0 481.94 395.9 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 N N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4XGU 
_atom_sites.fract_transf_matrix[1][1]    0.007892 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SO4 A 1 501 1 SO4 SO4 . 
H 3 ADP B 1 501 1 ADP ADP . 
I 2 SO4 C 1 501 2 SO4 SO4 . 
J 2 SO4 D 1 501 3 SO4 SO4 . 
K 2 SO4 D 1 502 5 SO4 SO4 . 
L 2 SO4 E 1 501 6 SO4 SO4 . 
M 2 SO4 E 1 502 7 SO4 SO4 . 
N 3 ADP E 1 503 2 ADP ADP . 
O 2 SO4 F 1 501 4 SO4 SO4 . 
P 4 HOH B 1 601 48 HOH HOH . 
P 4 HOH B 2 602 47 HOH HOH . 
P 4 HOH B 3 603 27 HOH HOH . 
P 4 HOH B 4 604 30 HOH HOH . 
P 4 HOH B 5 605 31 HOH HOH . 
P 4 HOH B 6 606 34 HOH HOH . 
P 4 HOH B 7 607 35 HOH HOH . 
P 4 HOH B 8 608 49 HOH HOH . 
Q 4 HOH C 1 601 10 HOH HOH . 
Q 4 HOH C 2 602 11 HOH HOH . 
Q 4 HOH C 3 603 12 HOH HOH . 
Q 4 HOH C 4 604 24 HOH HOH . 
Q 4 HOH C 5 605 25 HOH HOH . 
Q 4 HOH C 6 606 26 HOH HOH . 
Q 4 HOH C 7 607 28 HOH HOH . 
Q 4 HOH C 8 608 29 HOH HOH . 
Q 4 HOH C 9 609 36 HOH HOH . 
Q 4 HOH C 10 610 54 HOH HOH . 
Q 4 HOH C 11 611 55 HOH HOH . 
Q 4 HOH C 12 612 56 HOH HOH . 
Q 4 HOH C 13 613 57 HOH HOH . 
R 4 HOH D 1 601 18 HOH HOH . 
R 4 HOH D 2 602 19 HOH HOH . 
R 4 HOH D 3 603 20 HOH HOH . 
R 4 HOH D 4 604 21 HOH HOH . 
R 4 HOH D 5 605 22 HOH HOH . 
R 4 HOH D 6 606 23 HOH HOH . 
R 4 HOH D 7 607 39 HOH HOH . 
R 4 HOH D 8 608 40 HOH HOH . 
R 4 HOH D 9 609 41 HOH HOH . 
R 4 HOH D 10 610 42 HOH HOH . 
R 4 HOH D 11 611 43 HOH HOH . 
R 4 HOH D 12 612 44 HOH HOH . 
R 4 HOH D 13 613 45 HOH HOH . 
R 4 HOH D 14 614 46 HOH HOH . 
R 4 HOH D 15 615 52 HOH HOH . 
R 4 HOH D 16 616 53 HOH HOH . 
S 4 HOH E 1 601 38 HOH HOH . 
S 4 HOH E 2 602 4 HOH HOH . 
S 4 HOH E 3 603 7 HOH HOH . 
S 4 HOH E 4 604 8 HOH HOH . 
S 4 HOH E 5 605 16 HOH HOH . 
S 4 HOH E 6 606 17 HOH HOH . 
S 4 HOH E 7 607 33 HOH HOH . 
S 4 HOH E 8 608 37 HOH HOH . 
S 4 HOH E 9 609 50 HOH HOH . 
S 4 HOH E 10 610 51 HOH HOH . 
S 4 HOH E 11 611 58 HOH HOH . 
T 4 HOH F 1 601 1 HOH HOH . 
T 4 HOH F 2 602 2 HOH HOH . 
T 4 HOH F 3 603 3 HOH HOH . 
T 4 HOH F 4 604 5 HOH HOH . 
T 4 HOH F 5 605 9 HOH HOH . 
T 4 HOH F 6 606 14 HOH HOH . 
T 4 HOH F 7 607 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . N 3 45.162 230.341 216.763 1 54.92 ? PB ADP 503 E 1 
HETATM 2 O O1B ADP . . . N 3 45.493 230.774 215.356 1 52.06 -1 O1B ADP 503 E 1 
HETATM 3 O O2B ADP . . . N 3 46.207 230.755 217.769 1 55.09 ? O2B ADP 503 E 1 
HETATM 4 O O3B ADP . . . N 3 43.736 230.618 217.181 1 58.28 ? O3B ADP 503 E 1 
HETATM 5 P PA ADP . . . N 3 45.735 227.884 218.014 1 87.71 ? PA ADP 503 E 1 
HETATM 6 O O1A ADP . . . N 3 47.197 228.159 218.259 1 85.87 -1 O1A ADP 503 E 1 
HETATM 7 O O2A ADP . . . N 3 44.724 228.104 219.116 1 97.38 ? O2A ADP 503 E 1 
HETATM 8 O O3A ADP . . . N 3 45.266 228.73 216.725 1 60.5 ? O3A ADP 503 E 1 
HETATM 9 O O5' ADP . . . N 3 45.638 226.352 217.54 1 78.71 ? O5' ADP 503 E 1 
HETATM 10 C C5' ADP . . . N 3 44.791 225.926 216.475 1 77.74 ? C5' ADP 503 E 1 
HETATM 11 C C4' ADP . . . N 3 44.919 224.412 216.341 1 83.7 ? C4' ADP 503 E 1 
HETATM 12 O O4' ADP . . . N 3 45.044 224.056 214.963 1 84.32 ? O4' ADP 503 E 1 
HETATM 13 C C3' ADP . . . N 3 46.147 223.874 217.064 1 88.23 ? C3' ADP 503 E 1 
HETATM 14 O O3' ADP . . . N 3 45.752 223.092 218.194 1 91.35 ? O3' ADP 503 E 1 
HETATM 15 C C2' ADP . . . N 3 46.878 223.002 216.065 1 90.1 ? C2' ADP 503 E 1 
HETATM 16 O O2' ADP . . . N 3 46.803 221.629 216.466 1 98.93 ? O2' ADP 503 E 1 
HETATM 17 C C1' ADP . . . N 3 46.165 223.2 214.738 1 82.81 ? C1' ADP 503 E 1 
HETATM 18 N N9 ADP . . . N 3 47.089 223.914 213.832 1 72.81 ? N9 ADP 503 E 1 
HETATM 19 C C8 ADP . . . N 3 46.937 225.184 213.418 1 68.82 ? C8 ADP 503 E 1 
HETATM 20 N N7 ADP . . . N 3 47.951 225.555 212.597 1 71.07 ? N7 ADP 503 E 1 
HETATM 21 C C5 ADP . . . N 3 48.775 224.502 212.479 1 71.22 ? C5 ADP 503 E 1 
HETATM 22 C C6 ADP . . . N 3 50.033 224.218 211.763 1 79.32 ? C6 ADP 503 E 1 
HETATM 23 N N6 ADP . . . N 3 50.616 225.164 210.991 1 86.2 ? N6 ADP 503 E 1 
HETATM 24 N N1 ADP . . . N 3 50.572 222.988 211.903 1 86.62 ? N1 ADP 503 E 1 
HETATM 25 C C2 ADP . . . N 3 49.991 222.045 212.668 1 81.44 ? C2 ADP 503 E 1 
HETATM 26 N N3 ADP . . . N 3 48.848 222.233 213.351 1 76.07 ? N3 ADP 503 E 1 
HETATM 27 C C4 ADP . . . N 3 48.204 223.42 213.295 1 72.06 ? C4 ADP 503 E 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#