data_4XH1 # _model_server_result.job_id p5-Fzkekp578ncnyKiSoYA _model_server_result.datetime_utc '2024-11-05 05:42:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4XH1 # _exptl.entry_id 4XH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XH1 _cell.length_a 111.61 _cell.length_b 111.61 _cell.length_c 66.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+5/3 1 0 0 0 -1 0 0 0 -1 0 193.314191 111.083333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 4XH1 _atom_sites.fract_transf_matrix[1][1] 0.00896 _atom_sites.fract_transf_matrix[1][2] 0.005173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 2 GOL GOL . C 2 GOL A 1 502 3 GOL GOL . D 3 PPI A 1 503 1 PPI PPI . E 4 ANP A 1 504 1 ANP ANP . F 5 HOH A 1 601 112 HOH HOH . F 5 HOH A 2 602 9 HOH HOH . F 5 HOH A 3 603 86 HOH HOH . F 5 HOH A 4 604 44 HOH HOH . F 5 HOH A 5 605 68 HOH HOH . F 5 HOH A 6 606 29 HOH HOH . F 5 HOH A 7 607 3 HOH HOH . F 5 HOH A 8 608 35 HOH HOH . F 5 HOH A 9 609 12 HOH HOH . F 5 HOH A 10 610 25 HOH HOH . F 5 HOH A 11 611 19 HOH HOH . F 5 HOH A 12 612 5 HOH HOH . F 5 HOH A 13 613 20 HOH HOH . F 5 HOH A 14 614 79 HOH HOH . F 5 HOH A 15 615 62 HOH HOH . F 5 HOH A 16 616 1 HOH HOH . F 5 HOH A 17 617 6 HOH HOH . F 5 HOH A 18 618 54 HOH HOH . F 5 HOH A 19 619 15 HOH HOH . F 5 HOH A 20 620 32 HOH HOH . F 5 HOH A 21 621 60 HOH HOH . F 5 HOH A 22 622 8 HOH HOH . F 5 HOH A 23 623 72 HOH HOH . F 5 HOH A 24 624 38 HOH HOH . F 5 HOH A 25 625 33 HOH HOH . F 5 HOH A 26 626 93 HOH HOH . F 5 HOH A 27 627 30 HOH HOH . F 5 HOH A 28 628 57 HOH HOH . F 5 HOH A 29 629 39 HOH HOH . F 5 HOH A 30 630 50 HOH HOH . F 5 HOH A 31 631 67 HOH HOH . F 5 HOH A 32 632 34 HOH HOH . F 5 HOH A 33 633 2 HOH HOH . F 5 HOH A 34 634 81 HOH HOH . F 5 HOH A 35 635 31 HOH HOH . F 5 HOH A 36 636 55 HOH HOH . F 5 HOH A 37 637 66 HOH HOH . F 5 HOH A 38 638 17 HOH HOH . F 5 HOH A 39 639 36 HOH HOH . F 5 HOH A 40 640 78 HOH HOH . F 5 HOH A 41 641 13 HOH HOH . F 5 HOH A 42 642 4 HOH HOH . F 5 HOH A 43 643 58 HOH HOH . F 5 HOH A 44 644 28 HOH HOH . F 5 HOH A 45 645 27 HOH HOH . F 5 HOH A 46 646 101 HOH HOH . F 5 HOH A 47 647 40 HOH HOH . F 5 HOH A 48 648 102 HOH HOH . F 5 HOH A 49 649 47 HOH HOH . F 5 HOH A 50 650 11 HOH HOH . F 5 HOH A 51 651 42 HOH HOH . F 5 HOH A 52 652 16 HOH HOH . F 5 HOH A 53 653 52 HOH HOH . F 5 HOH A 54 654 14 HOH HOH . F 5 HOH A 55 655 95 HOH HOH . F 5 HOH A 56 656 23 HOH HOH . F 5 HOH A 57 657 7 HOH HOH . F 5 HOH A 58 658 75 HOH HOH . F 5 HOH A 59 659 41 HOH HOH . F 5 HOH A 60 660 45 HOH HOH . F 5 HOH A 61 661 110 HOH HOH . F 5 HOH A 62 662 83 HOH HOH . F 5 HOH A 63 663 69 HOH HOH . F 5 HOH A 64 664 109 HOH HOH . F 5 HOH A 65 665 51 HOH HOH . F 5 HOH A 66 666 48 HOH HOH . F 5 HOH A 67 667 46 HOH HOH . F 5 HOH A 68 668 64 HOH HOH . F 5 HOH A 69 669 49 HOH HOH . F 5 HOH A 70 670 80 HOH HOH . F 5 HOH A 71 671 105 HOH HOH . F 5 HOH A 72 672 22 HOH HOH . F 5 HOH A 73 673 21 HOH HOH . F 5 HOH A 74 674 53 HOH HOH . F 5 HOH A 75 675 87 HOH HOH . F 5 HOH A 76 676 18 HOH HOH . F 5 HOH A 77 677 37 HOH HOH . F 5 HOH A 78 678 59 HOH HOH . F 5 HOH A 79 679 77 HOH HOH . F 5 HOH A 80 680 70 HOH HOH . F 5 HOH A 81 681 65 HOH HOH . F 5 HOH A 82 682 26 HOH HOH . F 5 HOH A 83 683 71 HOH HOH . F 5 HOH A 84 684 24 HOH HOH . F 5 HOH A 85 685 56 HOH HOH . F 5 HOH A 86 686 84 HOH HOH . F 5 HOH A 87 687 82 HOH HOH . F 5 HOH A 88 688 10 HOH HOH . F 5 HOH A 89 689 63 HOH HOH . F 5 HOH A 90 690 100 HOH HOH . F 5 HOH A 91 691 92 HOH HOH . F 5 HOH A 92 692 89 HOH HOH . F 5 HOH A 93 693 73 HOH HOH . F 5 HOH A 94 694 96 HOH HOH . F 5 HOH A 95 695 108 HOH HOH . F 5 HOH A 96 696 90 HOH HOH . F 5 HOH A 97 697 97 HOH HOH . F 5 HOH A 98 698 43 HOH HOH . F 5 HOH A 99 699 106 HOH HOH . F 5 HOH A 100 700 98 HOH HOH . F 5 HOH A 101 701 88 HOH HOH . F 5 HOH A 102 702 61 HOH HOH . F 5 HOH A 103 703 107 HOH HOH . F 5 HOH A 104 704 74 HOH HOH . F 5 HOH A 105 705 99 HOH HOH . F 5 HOH A 106 706 103 HOH HOH . F 5 HOH A 107 707 104 HOH HOH . F 5 HOH A 108 708 91 HOH HOH . F 5 HOH A 109 709 94 HOH HOH . F 5 HOH A 110 710 111 HOH HOH . F 5 HOH A 111 711 85 HOH HOH . F 5 HOH A 112 712 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 6.633 95.669 55.045 0.5 37.22 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 6.303 95.52 53.673 0.5 38.08 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 5.904 96.913 55.467 0.5 36.6 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 4.528 96.696 55.195 0.5 42.21 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 6.144 97.107 56.942 0.5 34.59 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 7.063 98.191 57.087 0.5 36.01 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #