data_4XH1 # _model_server_result.job_id XyukJLoXDYixchWIjb1vsQ _model_server_result.datetime_utc '2024-11-05 05:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4XH1 # _exptl.entry_id 4XH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XH1 _cell.length_a 111.61 _cell.length_b 111.61 _cell.length_c 66.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+5/3 1 0 0 0 -1 0 0 0 -1 0 193.314191 111.083333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4XH1 _atom_sites.fract_transf_matrix[1][1] 0.00896 _atom_sites.fract_transf_matrix[1][2] 0.005173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 2 GOL GOL . C 2 GOL A 1 502 3 GOL GOL . D 3 PPI A 1 503 1 PPI PPI . E 4 ANP A 1 504 1 ANP ANP . F 5 HOH A 1 601 112 HOH HOH . F 5 HOH A 2 602 9 HOH HOH . F 5 HOH A 3 603 86 HOH HOH . F 5 HOH A 4 604 44 HOH HOH . F 5 HOH A 5 605 68 HOH HOH . F 5 HOH A 6 606 29 HOH HOH . F 5 HOH A 7 607 3 HOH HOH . F 5 HOH A 8 608 35 HOH HOH . F 5 HOH A 9 609 12 HOH HOH . F 5 HOH A 10 610 25 HOH HOH . F 5 HOH A 11 611 19 HOH HOH . F 5 HOH A 12 612 5 HOH HOH . F 5 HOH A 13 613 20 HOH HOH . F 5 HOH A 14 614 79 HOH HOH . F 5 HOH A 15 615 62 HOH HOH . F 5 HOH A 16 616 1 HOH HOH . F 5 HOH A 17 617 6 HOH HOH . F 5 HOH A 18 618 54 HOH HOH . F 5 HOH A 19 619 15 HOH HOH . F 5 HOH A 20 620 32 HOH HOH . F 5 HOH A 21 621 60 HOH HOH . F 5 HOH A 22 622 8 HOH HOH . F 5 HOH A 23 623 72 HOH HOH . F 5 HOH A 24 624 38 HOH HOH . F 5 HOH A 25 625 33 HOH HOH . F 5 HOH A 26 626 93 HOH HOH . F 5 HOH A 27 627 30 HOH HOH . F 5 HOH A 28 628 57 HOH HOH . F 5 HOH A 29 629 39 HOH HOH . F 5 HOH A 30 630 50 HOH HOH . F 5 HOH A 31 631 67 HOH HOH . F 5 HOH A 32 632 34 HOH HOH . F 5 HOH A 33 633 2 HOH HOH . F 5 HOH A 34 634 81 HOH HOH . F 5 HOH A 35 635 31 HOH HOH . F 5 HOH A 36 636 55 HOH HOH . F 5 HOH A 37 637 66 HOH HOH . F 5 HOH A 38 638 17 HOH HOH . F 5 HOH A 39 639 36 HOH HOH . F 5 HOH A 40 640 78 HOH HOH . F 5 HOH A 41 641 13 HOH HOH . F 5 HOH A 42 642 4 HOH HOH . F 5 HOH A 43 643 58 HOH HOH . F 5 HOH A 44 644 28 HOH HOH . F 5 HOH A 45 645 27 HOH HOH . F 5 HOH A 46 646 101 HOH HOH . F 5 HOH A 47 647 40 HOH HOH . F 5 HOH A 48 648 102 HOH HOH . F 5 HOH A 49 649 47 HOH HOH . F 5 HOH A 50 650 11 HOH HOH . F 5 HOH A 51 651 42 HOH HOH . F 5 HOH A 52 652 16 HOH HOH . F 5 HOH A 53 653 52 HOH HOH . F 5 HOH A 54 654 14 HOH HOH . F 5 HOH A 55 655 95 HOH HOH . F 5 HOH A 56 656 23 HOH HOH . F 5 HOH A 57 657 7 HOH HOH . F 5 HOH A 58 658 75 HOH HOH . F 5 HOH A 59 659 41 HOH HOH . F 5 HOH A 60 660 45 HOH HOH . F 5 HOH A 61 661 110 HOH HOH . F 5 HOH A 62 662 83 HOH HOH . F 5 HOH A 63 663 69 HOH HOH . F 5 HOH A 64 664 109 HOH HOH . F 5 HOH A 65 665 51 HOH HOH . F 5 HOH A 66 666 48 HOH HOH . F 5 HOH A 67 667 46 HOH HOH . F 5 HOH A 68 668 64 HOH HOH . F 5 HOH A 69 669 49 HOH HOH . F 5 HOH A 70 670 80 HOH HOH . F 5 HOH A 71 671 105 HOH HOH . F 5 HOH A 72 672 22 HOH HOH . F 5 HOH A 73 673 21 HOH HOH . F 5 HOH A 74 674 53 HOH HOH . F 5 HOH A 75 675 87 HOH HOH . F 5 HOH A 76 676 18 HOH HOH . F 5 HOH A 77 677 37 HOH HOH . F 5 HOH A 78 678 59 HOH HOH . F 5 HOH A 79 679 77 HOH HOH . F 5 HOH A 80 680 70 HOH HOH . F 5 HOH A 81 681 65 HOH HOH . F 5 HOH A 82 682 26 HOH HOH . F 5 HOH A 83 683 71 HOH HOH . F 5 HOH A 84 684 24 HOH HOH . F 5 HOH A 85 685 56 HOH HOH . F 5 HOH A 86 686 84 HOH HOH . F 5 HOH A 87 687 82 HOH HOH . F 5 HOH A 88 688 10 HOH HOH . F 5 HOH A 89 689 63 HOH HOH . F 5 HOH A 90 690 100 HOH HOH . F 5 HOH A 91 691 92 HOH HOH . F 5 HOH A 92 692 89 HOH HOH . F 5 HOH A 93 693 73 HOH HOH . F 5 HOH A 94 694 96 HOH HOH . F 5 HOH A 95 695 108 HOH HOH . F 5 HOH A 96 696 90 HOH HOH . F 5 HOH A 97 697 97 HOH HOH . F 5 HOH A 98 698 43 HOH HOH . F 5 HOH A 99 699 106 HOH HOH . F 5 HOH A 100 700 98 HOH HOH . F 5 HOH A 101 701 88 HOH HOH . F 5 HOH A 102 702 61 HOH HOH . F 5 HOH A 103 703 107 HOH HOH . F 5 HOH A 104 704 74 HOH HOH . F 5 HOH A 105 705 99 HOH HOH . F 5 HOH A 106 706 103 HOH HOH . F 5 HOH A 107 707 104 HOH HOH . F 5 HOH A 108 708 91 HOH HOH . F 5 HOH A 109 709 94 HOH HOH . F 5 HOH A 110 710 111 HOH HOH . F 5 HOH A 111 711 85 HOH HOH . F 5 HOH A 112 712 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 4 11.215 87.025 73.362 0.7 61.74 ? PG ANP 504 A 1 HETATM 2 O O1G ANP . . . E 4 12.098 87.402 74.524 0.7 69.6 ? O1G ANP 504 A 1 HETATM 3 O O2G ANP . . . E 4 11.079 85.555 73.026 0.7 67.47 ? O2G ANP 504 A 1 HETATM 4 O O3G ANP . . . E 4 11.753 87.739 72.125 0.7 50.69 ? O3G ANP 504 A 1 HETATM 5 P PB ANP . . . E 4 8.804 87.165 75.511 0.7 56.99 ? PB ANP 504 A 1 HETATM 6 O O1B ANP . . . E 4 7.51 86.39 75.465 0.7 50.37 ? O1B ANP 504 A 1 HETATM 7 O O2B ANP . . . E 4 9.858 86.524 76.38 0.7 58.56 ? O2B ANP 504 A 1 HETATM 8 N N3B ANP . . . E 4 9.594 87.49 73.927 0.7 54.82 ? N3B ANP 504 A 1 HETATM 9 P PA ANP . . . E 4 9.592 89.421 77.085 0.7 54.79 ? PA ANP 504 A 1 HETATM 10 O O1A ANP . . . E 4 10.867 89.159 76.317 0.7 59.76 ? O1A ANP 504 A 1 HETATM 11 O O2A ANP . . . E 4 9.556 89.121 78.57 0.7 47.48 ? O2A ANP 504 A 1 HETATM 12 O O3A ANP . . . E 4 8.436 88.566 76.254 0.7 46.97 ? O3A ANP 504 A 1 HETATM 13 O O5' ANP . . . E 4 9.333 91.028 77.043 0.7 53.02 ? O5' ANP 504 A 1 HETATM 14 C C5' ANP . . . E 4 10.13 91.9 77.841 0.7 53.01 ? C5' ANP 504 A 1 HETATM 15 C C4' ANP . . . E 4 9.441 93.236 77.787 0.7 55.21 ? C4' ANP 504 A 1 HETATM 16 O O4' ANP . . . E 4 8.163 93.006 78.401 0.7 55.74 ? O4' ANP 504 A 1 HETATM 17 C C3' ANP . . . E 4 10.14 94.393 78.535 0.7 54.89 ? C3' ANP 504 A 1 HETATM 18 O O3' ANP . . . E 4 10.372 95.58 77.746 0.7 49.22 ? O3' ANP 504 A 1 HETATM 19 C C2' ANP . . . E 4 9.134 94.731 79.614 0.7 58.55 ? C2' ANP 504 A 1 HETATM 20 O O2' ANP . . . E 4 9.059 96.123 79.988 0.7 63.05 ? O2' ANP 504 A 1 HETATM 21 C C1' ANP . . . E 4 7.843 94.268 78.966 0.7 57.02 ? C1' ANP 504 A 1 HETATM 22 N N9 ANP . . . E 4 6.826 94.321 80.012 0.7 54.58 ? N9 ANP 504 A 1 HETATM 23 C C8 ANP . . . E 4 6.618 93.473 81.032 0.7 52.28 ? C8 ANP 504 A 1 HETATM 24 N N7 ANP . . . E 4 5.6 93.953 81.791 0.7 51.61 ? N7 ANP 504 A 1 HETATM 25 C C5 ANP . . . E 4 5.152 95.112 81.244 0.7 52.74 ? C5 ANP 504 A 1 HETATM 26 C C6 ANP . . . E 4 4.107 96.172 81.509 0.7 44.38 ? C6 ANP 504 A 1 HETATM 27 N N6 ANP . . . E 4 3.259 96.085 82.549 0.7 42.83 ? N6 ANP 504 A 1 HETATM 28 N N1 ANP . . . E 4 4.01 97.221 80.661 0.7 44.81 ? N1 ANP 504 A 1 HETATM 29 C C2 ANP . . . E 4 4.826 97.35 79.616 0.7 48.29 ? C2 ANP 504 A 1 HETATM 30 N N3 ANP . . . E 4 5.793 96.448 79.329 0.7 54.87 ? N3 ANP 504 A 1 HETATM 31 C C4 ANP . . . E 4 5.995 95.341 80.075 0.7 50.85 ? C4 ANP 504 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #