data_4XH4 # _model_server_result.job_id kX9gCdIs5eTEvB_JolsdFA _model_server_result.datetime_utc '2024-11-05 05:32:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4XH4 # _exptl.entry_id 4XH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XH4 _cell.length_a 110.96 _cell.length_b 110.96 _cell.length_c 66.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.293333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4XH4 _atom_sites.fract_transf_matrix[1][1] 0.009012 _atom_sites.fract_transf_matrix[1][2] 0.005203 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP ANP . C 3 GOL A 1 502 1 GOL GOL . D 4 SO4 A 1 503 1 SO4 SO4 . E 5 PPI A 1 504 1 PPI PPI . F 6 HOH A 1 601 135 HOH HOH . F 6 HOH A 2 602 99 HOH HOH . F 6 HOH A 3 603 22 HOH HOH . F 6 HOH A 4 604 51 HOH HOH . F 6 HOH A 5 605 74 HOH HOH . F 6 HOH A 6 606 5 HOH HOH . F 6 HOH A 7 607 38 HOH HOH . F 6 HOH A 8 608 69 HOH HOH . F 6 HOH A 9 609 107 HOH HOH . F 6 HOH A 10 610 2 HOH HOH . F 6 HOH A 11 611 129 HOH HOH . F 6 HOH A 12 612 35 HOH HOH . F 6 HOH A 13 613 101 HOH HOH . F 6 HOH A 14 614 4 HOH HOH . F 6 HOH A 15 615 12 HOH HOH . F 6 HOH A 16 616 61 HOH HOH . F 6 HOH A 17 617 93 HOH HOH . F 6 HOH A 18 618 54 HOH HOH . F 6 HOH A 19 619 8 HOH HOH . F 6 HOH A 20 620 62 HOH HOH . F 6 HOH A 21 621 10 HOH HOH . F 6 HOH A 22 622 31 HOH HOH . F 6 HOH A 23 623 104 HOH HOH . F 6 HOH A 24 624 13 HOH HOH . F 6 HOH A 25 625 6 HOH HOH . F 6 HOH A 26 626 82 HOH HOH . F 6 HOH A 27 627 68 HOH HOH . F 6 HOH A 28 628 87 HOH HOH . F 6 HOH A 29 629 29 HOH HOH . F 6 HOH A 30 630 40 HOH HOH . F 6 HOH A 31 631 122 HOH HOH . F 6 HOH A 32 632 20 HOH HOH . F 6 HOH A 33 633 42 HOH HOH . F 6 HOH A 34 634 15 HOH HOH . F 6 HOH A 35 635 25 HOH HOH . F 6 HOH A 36 636 17 HOH HOH . F 6 HOH A 37 637 130 HOH HOH . F 6 HOH A 38 638 134 HOH HOH . F 6 HOH A 39 639 26 HOH HOH . F 6 HOH A 40 640 41 HOH HOH . F 6 HOH A 41 641 53 HOH HOH . F 6 HOH A 42 642 24 HOH HOH . F 6 HOH A 43 643 33 HOH HOH . F 6 HOH A 44 644 49 HOH HOH . F 6 HOH A 45 645 83 HOH HOH . F 6 HOH A 46 646 133 HOH HOH . F 6 HOH A 47 647 9 HOH HOH . F 6 HOH A 48 648 32 HOH HOH . F 6 HOH A 49 649 60 HOH HOH . F 6 HOH A 50 650 39 HOH HOH . F 6 HOH A 51 651 18 HOH HOH . F 6 HOH A 52 652 30 HOH HOH . F 6 HOH A 53 653 131 HOH HOH . F 6 HOH A 54 654 52 HOH HOH . F 6 HOH A 55 655 16 HOH HOH . F 6 HOH A 56 656 28 HOH HOH . F 6 HOH A 57 657 23 HOH HOH . F 6 HOH A 58 658 79 HOH HOH . F 6 HOH A 59 659 14 HOH HOH . F 6 HOH A 60 660 71 HOH HOH . F 6 HOH A 61 661 7 HOH HOH . F 6 HOH A 62 662 21 HOH HOH . F 6 HOH A 63 663 3 HOH HOH . F 6 HOH A 64 664 34 HOH HOH . F 6 HOH A 65 665 132 HOH HOH . F 6 HOH A 66 666 73 HOH HOH . F 6 HOH A 67 667 75 HOH HOH . F 6 HOH A 68 668 91 HOH HOH . F 6 HOH A 69 669 67 HOH HOH . F 6 HOH A 70 670 81 HOH HOH . F 6 HOH A 71 671 125 HOH HOH . F 6 HOH A 72 672 45 HOH HOH . F 6 HOH A 73 673 86 HOH HOH . F 6 HOH A 74 674 100 HOH HOH . F 6 HOH A 75 675 78 HOH HOH . F 6 HOH A 76 676 56 HOH HOH . F 6 HOH A 77 677 115 HOH HOH . F 6 HOH A 78 678 58 HOH HOH . F 6 HOH A 79 679 55 HOH HOH . F 6 HOH A 80 680 19 HOH HOH . F 6 HOH A 81 681 37 HOH HOH . F 6 HOH A 82 682 1 HOH HOH . F 6 HOH A 83 683 95 HOH HOH . F 6 HOH A 84 684 48 HOH HOH . F 6 HOH A 85 685 76 HOH HOH . F 6 HOH A 86 686 47 HOH HOH . F 6 HOH A 87 687 112 HOH HOH . F 6 HOH A 88 688 98 HOH HOH . F 6 HOH A 89 689 43 HOH HOH . F 6 HOH A 90 690 36 HOH HOH . F 6 HOH A 91 691 128 HOH HOH . F 6 HOH A 92 692 11 HOH HOH . F 6 HOH A 93 693 50 HOH HOH . F 6 HOH A 94 694 89 HOH HOH . F 6 HOH A 95 695 123 HOH HOH . F 6 HOH A 96 696 57 HOH HOH . F 6 HOH A 97 697 27 HOH HOH . F 6 HOH A 98 698 70 HOH HOH . F 6 HOH A 99 699 65 HOH HOH . F 6 HOH A 100 700 63 HOH HOH . F 6 HOH A 101 701 77 HOH HOH . F 6 HOH A 102 702 96 HOH HOH . F 6 HOH A 103 703 64 HOH HOH . F 6 HOH A 104 704 108 HOH HOH . F 6 HOH A 105 705 72 HOH HOH . F 6 HOH A 106 706 88 HOH HOH . F 6 HOH A 107 707 44 HOH HOH . F 6 HOH A 108 708 116 HOH HOH . F 6 HOH A 109 709 92 HOH HOH . F 6 HOH A 110 710 90 HOH HOH . F 6 HOH A 111 711 109 HOH HOH . F 6 HOH A 112 712 84 HOH HOH . F 6 HOH A 113 713 94 HOH HOH . F 6 HOH A 114 714 59 HOH HOH . F 6 HOH A 115 715 102 HOH HOH . F 6 HOH A 116 716 127 HOH HOH . F 6 HOH A 117 717 106 HOH HOH . F 6 HOH A 118 718 80 HOH HOH . F 6 HOH A 119 719 124 HOH HOH . F 6 HOH A 120 720 118 HOH HOH . F 6 HOH A 121 721 117 HOH HOH . F 6 HOH A 122 722 46 HOH HOH . F 6 HOH A 123 723 120 HOH HOH . F 6 HOH A 124 724 97 HOH HOH . F 6 HOH A 125 725 110 HOH HOH . F 6 HOH A 126 726 114 HOH HOH . F 6 HOH A 127 727 66 HOH HOH . F 6 HOH A 128 728 111 HOH HOH . F 6 HOH A 129 729 121 HOH HOH . F 6 HOH A 130 730 85 HOH HOH . F 6 HOH A 131 731 103 HOH HOH . F 6 HOH A 132 732 119 HOH HOH . F 6 HOH A 133 733 126 HOH HOH . F 6 HOH A 134 734 105 HOH HOH . F 6 HOH A 135 735 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -29.997 33.195 -4.706 0.7 68.05 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -31.305 32.54 -4.349 0.7 77.02 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -30.168 34.452 -5.496 0.7 76.02 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -29.063 32.209 -5.401 0.7 62.88 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -30.721 34.864 -2.446 0.7 74.39 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -31.329 35.113 -3.789 0.7 52.25 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -31.429 34.014 -1.409 0.7 68.21 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -29.469 33.841 -3.161 0.7 67.59 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -29.133 35.995 -0.632 0.7 40.03 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -28.305 34.943 -1.297 0.7 44.53 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -29.639 35.762 0.781 0.7 41.19 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -30.387 36.265 -1.649 0.7 38.77 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -28.066 37.189 -0.582 0.7 35.49 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -26.862 36.893 0.057 0.7 32.61 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -26.001 38.059 -0.238 0.7 35.58 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -26.704 39.191 0.279 0.7 35.34 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -24.631 37.959 0.467 0.7 38.22 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -23.566 38.611 -0.246 0.7 33.16 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -24.875 38.799 1.654 0.7 38.27 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -23.638 39.292 2.189 0.7 47.62 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -25.762 39.887 1.049 0.7 36.86 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -26.267 40.706 2.14 0.7 38.4 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -27.092 40.367 3.148 0.7 37.82 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -27.223 41.44 3.954 0.7 37.61 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -26.486 42.462 3.468 0.7 38.94 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -26.15 43.883 3.819 0.7 39.02 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -26.677 44.452 4.915 0.7 43.25 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -25.334 44.611 3.008 0.7 37.99 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -24.797 44.031 1.934 0.7 35.23 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -25.068 42.755 1.575 0.7 33.84 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -25.867 41.953 2.266 0.7 35.64 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #