data_4XH5
#
_model_server_result.job_id            Uhj4utV3eYpf5FHcaR5pBQ 
_model_server_result.datetime_utc      '2024-11-05 05:47:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4XH5 
#
_exptl.entry_id    4XH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XH5 
_cell.length_a            111 
_cell.length_b            111 
_cell.length_c            66.44 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.293333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     4XH5 
_atom_sites.fract_transf_matrix[1][1]    0.009009 
_atom_sites.fract_transf_matrix[1][2]    0.005201 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 1 SO4 SO4 . 
C 3 GOL A 1 402 1 GOL GOL . 
D 4 ANP A 1 403 1 ANP ANP . 
E 5 PPI A 1 404 1 PPI PPI . 
F 6 HOH A 1 501 93 HOH HOH . 
F 6 HOH A 2 502 94 HOH HOH . 
F 6 HOH A 3 503 8 HOH HOH . 
F 6 HOH A 4 504 5 HOH HOH . 
F 6 HOH A 5 505 50 HOH HOH . 
F 6 HOH A 6 506 43 HOH HOH . 
F 6 HOH A 7 507 28 HOH HOH . 
F 6 HOH A 8 508 52 HOH HOH . 
F 6 HOH A 9 509 20 HOH HOH . 
F 6 HOH A 10 510 22 HOH HOH . 
F 6 HOH A 11 511 101 HOH HOH . 
F 6 HOH A 12 512 63 HOH HOH . 
F 6 HOH A 13 513 17 HOH HOH . 
F 6 HOH A 14 514 7 HOH HOH . 
F 6 HOH A 15 515 69 HOH HOH . 
F 6 HOH A 16 516 89 HOH HOH . 
F 6 HOH A 17 517 38 HOH HOH . 
F 6 HOH A 18 518 2 HOH HOH . 
F 6 HOH A 19 519 10 HOH HOH . 
F 6 HOH A 20 520 19 HOH HOH . 
F 6 HOH A 21 521 32 HOH HOH . 
F 6 HOH A 22 522 23 HOH HOH . 
F 6 HOH A 23 523 54 HOH HOH . 
F 6 HOH A 24 524 80 HOH HOH . 
F 6 HOH A 25 525 16 HOH HOH . 
F 6 HOH A 26 526 105 HOH HOH . 
F 6 HOH A 27 527 25 HOH HOH . 
F 6 HOH A 28 528 59 HOH HOH . 
F 6 HOH A 29 529 3 HOH HOH . 
F 6 HOH A 30 530 4 HOH HOH . 
F 6 HOH A 31 531 39 HOH HOH . 
F 6 HOH A 32 532 51 HOH HOH . 
F 6 HOH A 33 533 72 HOH HOH . 
F 6 HOH A 34 534 27 HOH HOH . 
F 6 HOH A 35 535 1 HOH HOH . 
F 6 HOH A 36 536 60 HOH HOH . 
F 6 HOH A 37 537 66 HOH HOH . 
F 6 HOH A 38 538 12 HOH HOH . 
F 6 HOH A 39 539 15 HOH HOH . 
F 6 HOH A 40 540 26 HOH HOH . 
F 6 HOH A 41 541 56 HOH HOH . 
F 6 HOH A 42 542 21 HOH HOH . 
F 6 HOH A 43 543 82 HOH HOH . 
F 6 HOH A 44 544 42 HOH HOH . 
F 6 HOH A 45 545 31 HOH HOH . 
F 6 HOH A 46 546 34 HOH HOH . 
F 6 HOH A 47 547 24 HOH HOH . 
F 6 HOH A 48 548 58 HOH HOH . 
F 6 HOH A 49 549 77 HOH HOH . 
F 6 HOH A 50 550 9 HOH HOH . 
F 6 HOH A 51 551 29 HOH HOH . 
F 6 HOH A 52 552 62 HOH HOH . 
F 6 HOH A 53 553 41 HOH HOH . 
F 6 HOH A 54 554 33 HOH HOH . 
F 6 HOH A 55 555 6 HOH HOH . 
F 6 HOH A 56 556 68 HOH HOH . 
F 6 HOH A 57 557 44 HOH HOH . 
F 6 HOH A 58 558 35 HOH HOH . 
F 6 HOH A 59 559 104 HOH HOH . 
F 6 HOH A 60 560 30 HOH HOH . 
F 6 HOH A 61 561 100 HOH HOH . 
F 6 HOH A 62 562 47 HOH HOH . 
F 6 HOH A 63 563 79 HOH HOH . 
F 6 HOH A 64 564 97 HOH HOH . 
F 6 HOH A 65 565 81 HOH HOH . 
F 6 HOH A 66 566 11 HOH HOH . 
F 6 HOH A 67 567 73 HOH HOH . 
F 6 HOH A 68 568 67 HOH HOH . 
F 6 HOH A 69 569 103 HOH HOH . 
F 6 HOH A 70 570 99 HOH HOH . 
F 6 HOH A 71 571 36 HOH HOH . 
F 6 HOH A 72 572 91 HOH HOH . 
F 6 HOH A 73 573 45 HOH HOH . 
F 6 HOH A 74 574 55 HOH HOH . 
F 6 HOH A 75 575 13 HOH HOH . 
F 6 HOH A 76 576 18 HOH HOH . 
F 6 HOH A 77 577 37 HOH HOH . 
F 6 HOH A 78 578 57 HOH HOH . 
F 6 HOH A 79 579 76 HOH HOH . 
F 6 HOH A 80 580 53 HOH HOH . 
F 6 HOH A 81 581 49 HOH HOH . 
F 6 HOH A 82 582 61 HOH HOH . 
F 6 HOH A 83 583 14 HOH HOH . 
F 6 HOH A 84 584 84 HOH HOH . 
F 6 HOH A 85 585 90 HOH HOH . 
F 6 HOH A 86 586 46 HOH HOH . 
F 6 HOH A 87 587 64 HOH HOH . 
F 6 HOH A 88 588 65 HOH HOH . 
F 6 HOH A 89 589 40 HOH HOH . 
F 6 HOH A 90 590 74 HOH HOH . 
F 6 HOH A 91 591 48 HOH HOH . 
F 6 HOH A 92 592 88 HOH HOH . 
F 6 HOH A 93 593 78 HOH HOH . 
F 6 HOH A 94 594 75 HOH HOH . 
F 6 HOH A 95 595 95 HOH HOH . 
F 6 HOH A 96 596 96 HOH HOH . 
F 6 HOH A 97 597 92 HOH HOH . 
F 6 HOH A 98 598 70 HOH HOH . 
F 6 HOH A 99 599 85 HOH HOH . 
F 6 HOH A 100 600 83 HOH HOH . 
F 6 HOH A 101 601 71 HOH HOH . 
F 6 HOH A 102 602 102 HOH HOH . 
F 6 HOH A 103 603 98 HOH HOH . 
F 6 HOH A 104 604 87 HOH HOH . 
F 6 HOH A 105 605 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 4 -29.867 33.041 -4.251 0.7 57.76 ? PG ANP 403 A 1 
HETATM 2 O O1G ANP . . . D 4 -30.996 32.144 -3.838 0.7 68.3 ? O1G ANP 403 A 1 
HETATM 3 O O2G ANP . . . D 4 -29.41 32.573 -5.616 0.7 57.45 ? O2G ANP 403 A 1 
HETATM 4 O O3G ANP . . . D 4 -28.651 33.162 -3.373 0.7 59.26 ? O3G ANP 403 A 1 
HETATM 5 P PB ANP . . . D 4 -31.166 35.121 -2.345 0.7 71.03 ? PB ANP 403 A 1 
HETATM 6 O O1B ANP . . . D 4 -30.973 33.838 -1.528 0.7 71.81 ? O1B ANP 403 A 1 
HETATM 7 O O2B ANP . . . D 4 -32.56 35.764 -2.273 0.7 57.58 ? O2B ANP 403 A 1 
HETATM 8 N N3B ANP . . . D 4 -30.545 34.65 -3.97 0.7 53.7 ? N3B ANP 403 A 1 
HETATM 9 P PA ANP . . . D 4 -29.076 35.507 -0.632 0.7 47.29 ? PA ANP 403 A 1 
HETATM 10 O O1A ANP . . . D 4 -28.436 34.423 -1.443 0.7 43.98 ? O1A ANP 403 A 1 
HETATM 11 O O2A ANP . . . D 4 -29.685 35.186 0.739 0.7 47.56 ? O2A ANP 403 A 1 
HETATM 12 O O3A ANP . . . D 4 -30.232 36.172 -1.549 0.7 39.34 ? O3A ANP 403 A 1 
HETATM 13 O O5' ANP . . . D 4 -27.934 36.636 -0.537 0.7 33.87 ? O5' ANP 403 A 1 
HETATM 14 C C5' ANP . . . D 4 -26.726 36.39 0.124 0.7 38.65 ? C5' ANP 403 A 1 
HETATM 15 C C4' ANP . . . D 4 -25.839 37.557 -0.221 0.7 39.56 ? C4' ANP 403 A 1 
HETATM 16 O O4' ANP . . . D 4 -26.61 38.64 0.293 0.7 46.24 ? O4' ANP 403 A 1 
HETATM 17 C C3' ANP . . . D 4 -24.443 37.634 0.473 0.7 43.27 ? C3' ANP 403 A 1 
HETATM 18 O O3' ANP . . . D 4 -23.451 38.439 -0.205 0.7 33.04 ? O3' ANP 403 A 1 
HETATM 19 C C2' ANP . . . D 4 -24.737 38.487 1.66 0.7 42.8 ? C2' ANP 403 A 1 
HETATM 20 O O2' ANP . . . D 4 -23.573 39.183 2.136 0.7 51.87 ? O2' ANP 403 A 1 
HETATM 21 C C1' ANP . . . D 4 -25.705 39.462 1.019 0.7 41.15 ? C1' ANP 403 A 1 
HETATM 22 N N9 ANP . . . D 4 -26.199 40.267 2.108 0.7 40.25 ? N9 ANP 403 A 1 
HETATM 23 C C8 ANP . . . D 4 -26.96 39.836 3.132 0.7 35.09 ? C8 ANP 403 A 1 
HETATM 24 N N7 ANP . . . D 4 -27.148 40.871 3.963 0.7 36.63 ? N7 ANP 403 A 1 
HETATM 25 C C5 ANP . . . D 4 -26.45 41.932 3.484 0.7 38.68 ? C5 ANP 403 A 1 
HETATM 26 C C6 ANP . . . D 4 -26.175 43.319 3.916 0.7 39.49 ? C6 ANP 403 A 1 
HETATM 27 N N6 ANP . . . D 4 -26.773 43.727 5.058 0.7 42.18 ? N6 ANP 403 A 1 
HETATM 28 N N1 ANP . . . D 4 -25.379 44.127 3.144 0.7 37.05 ? N1 ANP 403 A 1 
HETATM 29 C C2 ANP . . . D 4 -24.818 43.674 2.009 0.7 36.02 ? C2 ANP 403 A 1 
HETATM 30 N N3 ANP . . . D 4 -25.033 42.395 1.578 0.7 38.83 ? N3 ANP 403 A 1 
HETATM 31 C C4 ANP . . . D 4 -25.8 41.517 2.265 0.7 36.26 ? C4 ANP 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#