data_4XHA # _model_server_result.job_id fhs7wjaBumO6XicOnH_jnw _model_server_result.datetime_utc '2024-10-19 16:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 4XHA # _exptl.entry_id 4XHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XHA _cell.length_a 154.05 _cell.length_b 224.57 _cell.length_c 128.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 171 A ASP 140 1_555 C LU LU . A LU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.443 ? metalc ? metalc2 A OD2 ASP 171 A ASP 140 1_555 C LU LU . A LU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc3 A OD1 ASP 171 A ASP 140 1_555 J LU LU . B LU 701 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc4 A OD2 ASP 171 A ASP 140 1_555 J LU LU . B LU 701 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 A OD2 ASP 173 A ASP 142 1_555 J LU LU . B LU 701 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? metalc ? metalc6 C LU LU . A LU 701 8_456 B OD1 ASP 171 B ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc7 C LU LU . A LU 701 8_456 B OD2 ASP 171 B ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc8 C LU LU . A LU 701 8_456 B OD1 ASP 173 B ASP 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc9 C LU LU . A LU 701 8_456 B OD2 ASP 173 B ASP 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc10 B OD1 ASP 173 B ASP 142 1_555 J LU LU . B LU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.49 ? metalc ? metalc11 B OD2 ASP 173 B ASP 142 1_555 J LU LU . B LU 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XHA _atom_sites.fract_transf_matrix[1][1] 0.006491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LU A 1 701 1 LU LU . D 3 SO4 A 1 702 1 SO4 SO4 . E 3 SO4 A 1 703 3 SO4 SO4 . F 3 SO4 A 1 704 4 SO4 SO4 . G 4 GOL A 1 705 1 GOL GOL . H 4 GOL A 1 706 2 GOL GOL . I 3 SO4 A 1 707 1 SO4 SO4 . J 2 LU B 1 701 7 LU LU . K 3 SO4 B 1 702 2 SO4 SO4 . L 3 SO4 B 1 703 5 SO4 SO4 . M 3 SO4 B 1 704 6 SO4 SO4 . N 3 SO4 B 1 705 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 62.676 48.199 67.301 1 72.1 ? C1 GOL 705 A 1 HETATM 2 O O1 GOL . . . G 4 61.604 47.772 66.488 1 73.57 ? O1 GOL 705 A 1 HETATM 3 C C2 GOL . . . G 4 62.852 49.716 67.231 1 61.84 ? C2 GOL 705 A 1 HETATM 4 O O2 GOL . . . G 4 61.822 50.301 66.463 1 51.14 ? O2 GOL 705 A 1 HETATM 5 C C3 GOL . . . G 4 62.857 50.315 68.637 1 56 ? C3 GOL 705 A 1 HETATM 6 O O3 GOL . . . G 4 64.013 49.93 69.35 1 44.39 ? O3 GOL 705 A 1 HETATM 7 H H11 GOL . . . G 4 62.49 47.903 68.333 1 86.52 ? H11 GOL 705 A 1 HETATM 8 H H12 GOL . . . G 4 63.595 47.712 66.974 1 86.52 ? H12 GOL 705 A 1 HETATM 9 H HO1 GOL . . . G 4 61.556 46.793 66.5 1 88.28 ? HO1 GOL 705 A 1 HETATM 10 H H2 GOL . . . G 4 63.815 49.927 66.766 1 74.21 ? H2 GOL 705 A 1 HETATM 11 H HO2 GOL . . . G 4 60.958 50.138 66.898 1 61.37 ? HO2 GOL 705 A 1 HETATM 12 H H31 GOL . . . G 4 62.818 51.402 68.568 1 67.2 ? H31 GOL 705 A 1 HETATM 13 H H32 GOL . . . G 4 61.97 49.982 69.176 1 67.2 ? H32 GOL 705 A 1 HETATM 14 H HO3 GOL . . . G 4 64.066 50.44 70.185 1 53.27 ? HO3 GOL 705 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #