data_4XHN # _model_server_result.job_id 73RsBCetV8cJiDqcJjaSYQ _model_server_result.datetime_utc '2025-03-26 16:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4XHN # _exptl.entry_id 4XHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XHN _cell.length_a 55.443 _cell.length_b 71.412 _cell.length_c 114.094 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 500 1_555 C O2G ANP . A ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc2 B MG MG . A MG 500 1_555 C O2B ANP . A ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc3 B MG MG . A MG 500 1_555 D O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4XHN _atom_sites.fract_transf_matrix[1][1] 0.018037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 500 500 MG MG . C 3 ANP A 1 501 501 ANP ANP . D 4 HOH A 1 601 79 HOH HOH . D 4 HOH A 2 602 68 HOH HOH . D 4 HOH A 3 603 73 HOH HOH . D 4 HOH A 4 604 82 HOH HOH . D 4 HOH A 5 605 33 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 51 HOH HOH . D 4 HOH A 8 608 47 HOH HOH . D 4 HOH A 9 609 50 HOH HOH . D 4 HOH A 10 610 38 HOH HOH . D 4 HOH A 11 611 43 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 92 HOH HOH . D 4 HOH A 14 614 87 HOH HOH . D 4 HOH A 15 615 70 HOH HOH . D 4 HOH A 16 616 1 HOH HOH . D 4 HOH A 17 617 2 HOH HOH . D 4 HOH A 18 618 3 HOH HOH . D 4 HOH A 19 619 4 HOH HOH . D 4 HOH A 20 620 5 HOH HOH . D 4 HOH A 21 621 7 HOH HOH . D 4 HOH A 22 622 8 HOH HOH . D 4 HOH A 23 623 10 HOH HOH . D 4 HOH A 24 624 11 HOH HOH . D 4 HOH A 25 625 14 HOH HOH . D 4 HOH A 26 626 15 HOH HOH . D 4 HOH A 27 627 17 HOH HOH . D 4 HOH A 28 628 18 HOH HOH . D 4 HOH A 29 629 19 HOH HOH . D 4 HOH A 30 630 20 HOH HOH . D 4 HOH A 31 631 21 HOH HOH . D 4 HOH A 32 632 22 HOH HOH . D 4 HOH A 33 633 23 HOH HOH . D 4 HOH A 34 634 24 HOH HOH . D 4 HOH A 35 635 25 HOH HOH . D 4 HOH A 36 636 26 HOH HOH . D 4 HOH A 37 637 27 HOH HOH . D 4 HOH A 38 638 28 HOH HOH . D 4 HOH A 39 639 29 HOH HOH . D 4 HOH A 40 640 30 HOH HOH . D 4 HOH A 41 641 31 HOH HOH . D 4 HOH A 42 642 32 HOH HOH . D 4 HOH A 43 643 34 HOH HOH . D 4 HOH A 44 644 35 HOH HOH . D 4 HOH A 45 645 36 HOH HOH . D 4 HOH A 46 646 37 HOH HOH . D 4 HOH A 47 647 39 HOH HOH . D 4 HOH A 48 648 40 HOH HOH . D 4 HOH A 49 649 41 HOH HOH . D 4 HOH A 50 650 42 HOH HOH . D 4 HOH A 51 651 46 HOH HOH . D 4 HOH A 52 652 48 HOH HOH . D 4 HOH A 53 653 49 HOH HOH . D 4 HOH A 54 654 52 HOH HOH . D 4 HOH A 55 655 53 HOH HOH . D 4 HOH A 56 656 54 HOH HOH . D 4 HOH A 57 657 55 HOH HOH . D 4 HOH A 58 658 56 HOH HOH . D 4 HOH A 59 659 57 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 62 HOH HOH . D 4 HOH A 62 662 63 HOH HOH . D 4 HOH A 63 663 64 HOH HOH . D 4 HOH A 64 664 65 HOH HOH . D 4 HOH A 65 665 66 HOH HOH . D 4 HOH A 66 666 67 HOH HOH . D 4 HOH A 67 667 69 HOH HOH . D 4 HOH A 68 668 72 HOH HOH . D 4 HOH A 69 669 75 HOH HOH . D 4 HOH A 70 670 76 HOH HOH . D 4 HOH A 71 671 77 HOH HOH . D 4 HOH A 72 672 80 HOH HOH . D 4 HOH A 73 673 81 HOH HOH . D 4 HOH A 74 674 83 HOH HOH . D 4 HOH A 75 675 84 HOH HOH . D 4 HOH A 76 676 85 HOH HOH . D 4 HOH A 77 677 86 HOH HOH . D 4 HOH A 78 678 88 HOH HOH . D 4 HOH A 79 679 89 HOH HOH . D 4 HOH A 80 680 91 HOH HOH . D 4 HOH A 81 681 93 HOH HOH . D 4 HOH A 82 682 94 HOH HOH . D 4 HOH A 83 683 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 76.197 95.709 122.945 1 34.54 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 3 76.92 97.002 122.741 1 37.98 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 3 77.054 94.766 123.877 1 53.99 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 3 74.801 95.997 123.633 1 82.36 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 3 76.111 93.303 121.529 1 31.63 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 3 74.809 92.638 120.999 1 72.03 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 3 76.334 92.878 122.945 1 35.61 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 3 75.934 94.97 121.445 1 38.93 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 3 78.106 91.514 120.819 1 31.52 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 3 77.199 90.344 120.766 1 38.42 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 3 78.92 91.61 122.113 1 27.04 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 3 77.329 92.893 120.645 1 51.23 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 3 79.047 91.47 119.548 1 31.11 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 3 80.13 92.418 119.428 1 29.01 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 3 80.682 92.394 118.023 1 29.16 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 3 81.382 91.149 117.786 1 31.1 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 3 79.646 92.524 116.904 1 26.08 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 3 80.152 93.376 115.883 1 25.03 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 3 79.512 91.085 116.401 1 27.16 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 3 79.068 91.007 115.052 1 22.47 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 3 80.953 90.618 116.551 1 28.99 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 3 81.132 89.171 116.558 1 28.9 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 3 80.377 88.232 117.208 1 29.17 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 3 80.775 86.994 117.02 1 33.11 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 3 81.872 87.137 116.181 1 33.85 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 3 82.75 86.192 115.603 1 30.76 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 3 82.658 84.875 115.794 1 28.77 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 3 83.745 86.664 114.818 1 36.7 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 3 83.844 87.982 114.624 1 40.08 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 3 83.076 88.961 115.111 1 38.79 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 3 82.104 88.466 115.887 1 34.13 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #