data_4XHO
#
_model_server_result.job_id            gFzQGnkHdcs8rkaYL0zfGw 
_model_server_result.datetime_utc      '2025-03-26 16:41:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xho 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    4XHO 
#
_exptl.entry_id    4XHO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XHO 
_cell.length_a            55.83 
_cell.length_b            73.156 
_cell.length_c            113.726 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XHO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O3G ATP . A ATP 500 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 B O2B ATP . A ATP 500 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 C MG MG . A MG 501 1_555 D O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 C MG MG . A MG 501 1_555 D O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? 
metalc ? metalc5 C MG MG . A MG 501 1_555 D O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc6 C MG MG . A MG 501 1_555 D O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc7 C MG MG . A MG 501 1_555 D O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4XHO 
_atom_sites.fract_transf_matrix[1][1]    0.017912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 500 500 ATP ATP . 
C 3 MG A 1 501 501 MG MG . 
D 4 HOH A 1 601 38 HOH HOH . 
D 4 HOH A 2 602 93 HOH HOH . 
D 4 HOH A 3 603 73 HOH HOH . 
D 4 HOH A 4 604 21 HOH HOH . 
D 4 HOH A 5 605 29 HOH HOH . 
D 4 HOH A 6 606 61 HOH HOH . 
D 4 HOH A 7 607 133 HOH HOH . 
D 4 HOH A 8 608 78 HOH HOH . 
D 4 HOH A 9 609 41 HOH HOH . 
D 4 HOH A 10 610 25 HOH HOH . 
D 4 HOH A 11 611 109 HOH HOH . 
D 4 HOH A 12 612 71 HOH HOH . 
D 4 HOH A 13 613 56 HOH HOH . 
D 4 HOH A 14 614 92 HOH HOH . 
D 4 HOH A 15 615 125 HOH HOH . 
D 4 HOH A 16 616 53 HOH HOH . 
D 4 HOH A 17 617 103 HOH HOH . 
D 4 HOH A 18 618 52 HOH HOH . 
D 4 HOH A 19 619 134 HOH HOH . 
D 4 HOH A 20 620 112 HOH HOH . 
D 4 HOH A 21 621 1 HOH HOH . 
D 4 HOH A 22 622 2 HOH HOH . 
D 4 HOH A 23 623 3 HOH HOH . 
D 4 HOH A 24 624 4 HOH HOH . 
D 4 HOH A 25 625 5 HOH HOH . 
D 4 HOH A 26 626 6 HOH HOH . 
D 4 HOH A 27 627 7 HOH HOH . 
D 4 HOH A 28 628 8 HOH HOH . 
D 4 HOH A 29 629 9 HOH HOH . 
D 4 HOH A 30 630 10 HOH HOH . 
D 4 HOH A 31 631 11 HOH HOH . 
D 4 HOH A 32 632 12 HOH HOH . 
D 4 HOH A 33 633 13 HOH HOH . 
D 4 HOH A 34 634 14 HOH HOH . 
D 4 HOH A 35 635 15 HOH HOH . 
D 4 HOH A 36 636 16 HOH HOH . 
D 4 HOH A 37 637 17 HOH HOH . 
D 4 HOH A 38 638 18 HOH HOH . 
D 4 HOH A 39 639 19 HOH HOH . 
D 4 HOH A 40 640 20 HOH HOH . 
D 4 HOH A 41 641 22 HOH HOH . 
D 4 HOH A 42 642 23 HOH HOH . 
D 4 HOH A 43 643 24 HOH HOH . 
D 4 HOH A 44 644 26 HOH HOH . 
D 4 HOH A 45 645 27 HOH HOH . 
D 4 HOH A 46 646 28 HOH HOH . 
D 4 HOH A 47 647 30 HOH HOH . 
D 4 HOH A 48 648 32 HOH HOH . 
D 4 HOH A 49 649 33 HOH HOH . 
D 4 HOH A 50 650 34 HOH HOH . 
D 4 HOH A 51 651 35 HOH HOH . 
D 4 HOH A 52 652 36 HOH HOH . 
D 4 HOH A 53 653 37 HOH HOH . 
D 4 HOH A 54 654 39 HOH HOH . 
D 4 HOH A 55 655 40 HOH HOH . 
D 4 HOH A 56 656 42 HOH HOH . 
D 4 HOH A 57 657 43 HOH HOH . 
D 4 HOH A 58 658 44 HOH HOH . 
D 4 HOH A 59 659 45 HOH HOH . 
D 4 HOH A 60 660 46 HOH HOH . 
D 4 HOH A 61 661 47 HOH HOH . 
D 4 HOH A 62 662 48 HOH HOH . 
D 4 HOH A 63 663 49 HOH HOH . 
D 4 HOH A 64 664 50 HOH HOH . 
D 4 HOH A 65 665 51 HOH HOH . 
D 4 HOH A 66 666 54 HOH HOH . 
D 4 HOH A 67 667 55 HOH HOH . 
D 4 HOH A 68 668 57 HOH HOH . 
D 4 HOH A 69 669 58 HOH HOH . 
D 4 HOH A 70 670 59 HOH HOH . 
D 4 HOH A 71 671 60 HOH HOH . 
D 4 HOH A 72 672 62 HOH HOH . 
D 4 HOH A 73 673 63 HOH HOH . 
D 4 HOH A 74 674 64 HOH HOH . 
D 4 HOH A 75 675 65 HOH HOH . 
D 4 HOH A 76 676 66 HOH HOH . 
D 4 HOH A 77 677 67 HOH HOH . 
D 4 HOH A 78 678 68 HOH HOH . 
D 4 HOH A 79 679 69 HOH HOH . 
D 4 HOH A 80 680 70 HOH HOH . 
D 4 HOH A 81 681 72 HOH HOH . 
D 4 HOH A 82 682 74 HOH HOH . 
D 4 HOH A 83 683 75 HOH HOH . 
D 4 HOH A 84 684 76 HOH HOH . 
D 4 HOH A 85 685 77 HOH HOH . 
D 4 HOH A 86 686 79 HOH HOH . 
D 4 HOH A 87 687 80 HOH HOH . 
D 4 HOH A 88 688 81 HOH HOH . 
D 4 HOH A 89 689 82 HOH HOH . 
D 4 HOH A 90 690 83 HOH HOH . 
D 4 HOH A 91 691 84 HOH HOH . 
D 4 HOH A 92 692 85 HOH HOH . 
D 4 HOH A 93 693 86 HOH HOH . 
D 4 HOH A 94 694 88 HOH HOH . 
D 4 HOH A 95 695 89 HOH HOH . 
D 4 HOH A 96 696 90 HOH HOH . 
D 4 HOH A 97 697 94 HOH HOH . 
D 4 HOH A 98 698 95 HOH HOH . 
D 4 HOH A 99 699 96 HOH HOH . 
D 4 HOH A 100 700 97 HOH HOH . 
D 4 HOH A 101 701 98 HOH HOH . 
D 4 HOH A 102 702 99 HOH HOH . 
D 4 HOH A 103 703 100 HOH HOH . 
D 4 HOH A 104 704 101 HOH HOH . 
D 4 HOH A 105 705 102 HOH HOH . 
D 4 HOH A 106 706 104 HOH HOH . 
D 4 HOH A 107 707 105 HOH HOH . 
D 4 HOH A 108 708 106 HOH HOH . 
D 4 HOH A 109 709 107 HOH HOH . 
D 4 HOH A 110 710 108 HOH HOH . 
D 4 HOH A 111 711 110 HOH HOH . 
D 4 HOH A 112 712 111 HOH HOH . 
D 4 HOH A 113 713 113 HOH HOH . 
D 4 HOH A 114 714 114 HOH HOH . 
D 4 HOH A 115 715 115 HOH HOH . 
D 4 HOH A 116 716 116 HOH HOH . 
D 4 HOH A 117 717 117 HOH HOH . 
D 4 HOH A 118 718 118 HOH HOH . 
D 4 HOH A 119 719 119 HOH HOH . 
D 4 HOH A 120 720 120 HOH HOH . 
D 4 HOH A 121 721 121 HOH HOH . 
D 4 HOH A 122 722 122 HOH HOH . 
D 4 HOH A 123 723 123 HOH HOH . 
D 4 HOH A 124 724 124 HOH HOH . 
D 4 HOH A 125 725 126 HOH HOH . 
D 4 HOH A 126 726 127 HOH HOH . 
D 4 HOH A 127 727 128 HOH HOH . 
D 4 HOH A 128 728 129 HOH HOH . 
D 4 HOH A 129 729 130 HOH HOH . 
D 4 HOH A 130 730 131 HOH HOH . 
D 4 HOH A 131 731 132 HOH HOH . 
D 4 HOH A 132 732 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -49.26 -61.773 236.195 1 51.99 ? PG ATP 500 A 1 
HETATM 2 O O1G ATP . . . B 2 -49.467 -63.105 235.509 1 50.12 ? O1G ATP 500 A 1 
HETATM 3 O O2G ATP . . . B 2 -47.813 -61.404 236.465 1 55 ? O2G ATP 500 A 1 
HETATM 4 O O3G ATP . . . B 2 -50.217 -61.514 237.346 1 53.61 ? O3G ATP 500 A 1 
HETATM 5 P PB ATP . . . B 2 -49.214 -59.209 234.904 1 24.86 ? PB ATP 500 A 1 
HETATM 6 O O1B ATP . . . B 2 -48.007 -59.188 234.004 1 26.81 ? O1B ATP 500 A 1 
HETATM 7 O O2B ATP . . . B 2 -49.235 -58.514 236.248 1 21.38 ? O2B ATP 500 A 1 
HETATM 8 O O3B ATP . . . B 2 -49.743 -60.713 235.094 1 16.56 ? O3B ATP 500 A 1 
HETATM 9 P PA ATP . . . B 2 -51.161 -57.379 233.952 1 24.56 ? PA ATP 500 A 1 
HETATM 10 O O1A ATP . . . B 2 -50.114 -56.301 233.746 1 19.63 ? O1A ATP 500 A 1 
HETATM 11 O O2A ATP . . . B 2 -52.023 -57.367 235.18 1 19.5 ? O2A ATP 500 A 1 
HETATM 12 O O3A ATP . . . B 2 -50.457 -58.815 233.951 1 17.97 ? O3A ATP 500 A 1 
HETATM 13 O O5' ATP . . . B 2 -52.112 -57.495 232.667 1 25.57 ? O5' ATP 500 A 1 
HETATM 14 C C5' ATP . . . B 2 -53.032 -58.576 232.564 1 23.46 ? C5' ATP 500 A 1 
HETATM 15 C C4' ATP . . . B 2 -53.683 -58.518 231.19 1 25.16 ? C4' ATP 500 A 1 
HETATM 16 O O4' ATP . . . B 2 -54.285 -57.238 230.941 1 22.35 ? O4' ATP 500 A 1 
HETATM 17 C C3' ATP . . . B 2 -52.617 -58.724 230.13 1 25.51 ? C3' ATP 500 A 1 
HETATM 18 O O3' ATP . . . B 2 -53.128 -59.62 229.143 1 22.42 ? O3' ATP 500 A 1 
HETATM 19 C C2' ATP . . . B 2 -52.402 -57.335 229.56 1 23.56 ? C2' ATP 500 A 1 
HETATM 20 O O2' ATP . . . B 2 -51.885 -57.385 228.231 1 25.11 ? O2' ATP 500 A 1 
HETATM 21 C C1' ATP . . . B 2 -53.797 -56.747 229.688 1 19.88 ? C1' ATP 500 A 1 
HETATM 22 N N9 ATP . . . B 2 -53.845 -55.272 229.681 1 19.16 ? N9 ATP 500 A 1 
HETATM 23 C C8 ATP . . . B 2 -53.045 -54.441 230.364 1 19.66 ? C8 ATP 500 A 1 
HETATM 24 N N7 ATP . . . B 2 -53.377 -53.14 230.142 1 18.13 ? N7 ATP 500 A 1 
HETATM 25 C C5 ATP . . . B 2 -54.407 -53.135 229.286 1 20.57 ? C5 ATP 500 A 1 
HETATM 26 C C6 ATP . . . B 2 -55.238 -52.097 228.638 1 24.33 ? C6 ATP 500 A 1 
HETATM 27 N N6 ATP . . . B 2 -55.012 -50.787 228.868 1 26.41 ? N6 ATP 500 A 1 
HETATM 28 N N1 ATP . . . B 2 -56.217 -52.506 227.814 1 25.76 ? N1 ATP 500 A 1 
HETATM 29 C C2 ATP . . . B 2 -56.441 -53.815 227.581 1 26.19 ? C2 ATP 500 A 1 
HETATM 30 N N3 ATP . . . B 2 -55.736 -54.816 228.134 1 22.39 ? N3 ATP 500 A 1 
HETATM 31 C C4 ATP . . . B 2 -54.715 -54.542 228.982 1 22.05 ? C4 ATP 500 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#