data_4XI3 # _model_server_result.job_id 0KzRTbxHDFhLanQpj56bQQ _model_server_result.datetime_utc '2024-11-22 21:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4XI3 # _exptl.entry_id 4XI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Bazedoxifene _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.76 _cell.angle_beta 75.36 _cell.angle_gamma 63.03 _cell.entry_id 4XI3 _cell.length_a 53.575 _cell.length_b 59.165 _cell.length_c 94.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C30 H34 N2 O3' _chem_comp.formula_weight 470.603 _chem_comp.id 29S _chem_comp.mon_nstd_flag . _chem_comp.name Bazedoxifene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{4-[2-(azepan-1-yl)ethoxy]benzyl}-2-(4-hydroxyphenyl)-3-methyl-1H-indol-5-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAC 29S sing 1 n n CAB CAA 29S sing 2 n n CAC CAD 29S sing 3 n n CAA CAG 29S sing 4 n n CAD CAE 29S sing 5 n n CAG NAF 29S sing 6 n n CAE NAF 29S sing 7 n n NAF CAH 29S sing 8 n n OBI CBF 29S sing 9 n n CAH CAI 29S sing 10 n n CBF CBG 29S doub 11 n y CBF CBE 29S sing 12 n y OAJ CAI 29S sing 13 n n OAJ CAK 29S sing 14 n n CBG CAT 29S sing 15 n y CAP CAK 29S doub 16 n y CAP CAO 29S sing 17 n y CBE CBD 29S doub 18 n y CAK CAL 29S sing 19 n y CAT CAU 29S sing 20 n y CAT CAS 29S doub 21 n y CAO CAN 29S doub 22 n y CBH CAU 29S sing 23 n n CBD CAS 29S sing 24 n y CAU CAV 29S doub 25 n y CAS NAR 29S sing 26 n y CAL CAM 29S doub 27 n y CAV NAR 29S sing 28 n y CAV CAW 29S sing 29 n n CAN CAM 29S sing 30 n y CAN CAQ 29S sing 31 n n NAR CAQ 29S sing 32 n n CBB CAW 29S doub 33 n y CBB CBA 29S sing 34 n y CAW CAX 29S sing 35 n y CBA CAZ 29S doub 36 n y CAX CAY 29S doub 37 n y CAZ OBC 29S sing 38 n n CAZ CAY 29S sing 39 n y CAE H1 29S sing 40 n n CAE H2 29S sing 41 n n CAD H3 29S sing 42 n n CAD H4 29S sing 43 n n CAC H5 29S sing 44 n n CAC H6 29S sing 45 n n CAB H7 29S sing 46 n n CAB H8 29S sing 47 n n CAA H9 29S sing 48 n n CAA H10 29S sing 49 n n CAG H11 29S sing 50 n n CAG H12 29S sing 51 n n CAH H14 29S sing 52 n n CAH H15 29S sing 53 n n CAI H16 29S sing 54 n n CAI H17 29S sing 55 n n CAL H18 29S sing 56 n n CAM H19 29S sing 57 n n CAP H20 29S sing 58 n n CAO H21 29S sing 59 n n CAQ H22 29S sing 60 n n CAQ H23 29S sing 61 n n CBD H24 29S sing 62 n n CBE H25 29S sing 63 n n OBI H26 29S sing 64 n n CBG H27 29S sing 65 n n CBH H28 29S sing 66 n n CBH H29 29S sing 67 n n CBH H30 29S sing 68 n n CAX H31 29S sing 69 n n CAY H32 29S sing 70 n n OBC H33 29S sing 71 n n CBA H34 29S sing 72 n n CBB H35 29S sing 73 n n # _atom_sites.entry_id 4XI3 _atom_sites.fract_transf_matrix[1][1] 0.018665 _atom_sites.fract_transf_matrix[1][2] -0.009496 _atom_sites.fract_transf_matrix[1][3] -0.005528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018964 _atom_sites.fract_transf_matrix[2][3] 0.00128 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 29S A 1 601 601 29S 29S . F 2 29S B 1 601 601 29S 29S . G 2 29S C 1 601 601 29S 29S . H 2 29S D 1 601 601 29S 29S . I 3 HOH A 1 701 701 HOH HOH . I 3 HOH A 2 702 703 HOH HOH . I 3 HOH A 3 703 706 HOH HOH . I 3 HOH A 4 704 710 HOH HOH . I 3 HOH A 5 705 705 HOH HOH . I 3 HOH A 6 706 712 HOH HOH . I 3 HOH A 7 707 713 HOH HOH . I 3 HOH A 8 708 708 HOH HOH . I 3 HOH A 9 709 711 HOH HOH . I 3 HOH A 10 710 714 HOH HOH . I 3 HOH A 11 711 702 HOH HOH . I 3 HOH A 12 712 709 HOH HOH . I 3 HOH A 13 713 715 HOH HOH . I 3 HOH A 14 714 717 HOH HOH . I 3 HOH A 15 715 716 HOH HOH . I 3 HOH A 16 716 704 HOH HOH . J 3 HOH B 1 701 706 HOH HOH . J 3 HOH B 2 702 708 HOH HOH . J 3 HOH B 3 703 710 HOH HOH . J 3 HOH B 4 704 711 HOH HOH . J 3 HOH B 5 705 709 HOH HOH . J 3 HOH B 6 706 712 HOH HOH . K 3 HOH C 1 701 703 HOH HOH . K 3 HOH C 2 702 702 HOH HOH . K 3 HOH C 3 703 705 HOH HOH . K 3 HOH C 4 704 706 HOH HOH . K 3 HOH C 5 705 707 HOH HOH . K 3 HOH C 6 706 709 HOH HOH . K 3 HOH C 7 707 704 HOH HOH . L 3 HOH D 1 701 705 HOH HOH . L 3 HOH D 2 702 702 HOH HOH . L 3 HOH D 3 703 703 HOH HOH . L 3 HOH D 4 704 704 HOH HOH . L 3 HOH D 5 705 706 HOH HOH . L 3 HOH D 6 706 710 HOH HOH . L 3 HOH D 7 707 707 HOH HOH . L 3 HOH D 8 708 708 HOH HOH . L 3 HOH D 9 709 709 HOH HOH . L 3 HOH D 10 710 705 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAE 29S . . . E 2 -10.267 -10.042 29.167 1 64.64 ? CAE 29S 601 A 1 HETATM 2 C CAD 29S . . . E 2 -10.901 -9.803 27.831 1 62.7 ? CAD 29S 601 A 1 HETATM 3 C CAC 29S . . . E 2 -10.37 -9.078 26.543 1 67.58 ? CAC 29S 601 A 1 HETATM 4 C CAB 29S . . . E 2 -9.159 -9.778 26.208 1 68.41 ? CAB 29S 601 A 1 HETATM 5 C CAA 29S . . . E 2 -8.414 -9.349 27.609 1 75.91 ? CAA 29S 601 A 1 HETATM 6 C CAG 29S . . . E 2 -8.624 -9.503 29.18 1 65.78 ? CAG 29S 601 A 1 HETATM 7 N NAF 29S . . . E 2 -9.816 -8.999 29.978 1 74.48 ? NAF 29S 601 A 1 HETATM 8 C CAH 29S . . . E 2 -9.284 -9.493 31.297 1 58.87 ? CAH 29S 601 A 1 HETATM 9 C CAI 29S . . . E 2 -8.162 -10.56 31.535 1 48.48 ? CAI 29S 601 A 1 HETATM 10 O OAJ 29S . . . E 2 -6.822 -10.303 31.063 1 63.5 ? OAJ 29S 601 A 1 HETATM 11 C CAK 29S . . . E 2 -6.013 -9.522 31.824 1 50.72 ? CAK 29S 601 A 1 HETATM 12 C CAL 29S . . . E 2 -6.428 -8.99 33.039 1 31.71 ? CAL 29S 601 A 1 HETATM 13 C CAM 29S . . . E 2 -5.549 -8.206 33.776 1 46.65 ? CAM 29S 601 A 1 HETATM 14 C CAP 29S . . . E 2 -4.728 -9.282 31.357 1 42.58 ? CAP 29S 601 A 1 HETATM 15 C CAO 29S . . . E 2 -3.854 -8.499 32.092 1 38.91 ? CAO 29S 601 A 1 HETATM 16 C CAN 29S . . . E 2 -4.266 -7.958 33.301 1 51.13 ? CAN 29S 601 A 1 HETATM 17 C CAQ 29S . . . E 2 -3.393 -7.171 34.04 1 45.69 ? CAQ 29S 601 A 1 HETATM 18 N NAR 29S . . . E 2 -2.001 -7.274 33.492 1 47.97 ? NAR 29S 601 A 1 HETATM 19 C CAS 29S . . . E 2 -1.681 -6.23 32.729 1 62.17 ? CAS 29S 601 A 1 HETATM 20 C CBD 29S . . . E 2 -2.419 -5.188 32.344 1 56.38 ? CBD 29S 601 A 1 HETATM 21 C CBE 29S . . . E 2 -1.902 -4.216 31.501 1 47.12 ? CBE 29S 601 A 1 HETATM 22 C CBF 29S . . . E 2 -0.594 -4.368 31.072 1 53.6 ? CBF 29S 601 A 1 HETATM 23 O OBI 29S . . . E 2 -0.04 -3.442 30.243 1 52.45 ? OBI 29S 601 A 1 HETATM 24 C CBG 29S . . . E 2 0.131 -5.477 31.502 1 57.23 ? CBG 29S 601 A 1 HETATM 25 C CAT 29S . . . E 2 -0.428 -6.377 32.316 1 53.46 ? CAT 29S 601 A 1 HETATM 26 C CAU 29S . . . E 2 0.033 -7.5 32.861 1 56.81 ? CAU 29S 601 A 1 HETATM 27 C CBH 29S . . . E 2 1.472 -7.957 32.574 1 58.02 ? CBH 29S 601 A 1 HETATM 28 C CAV 29S . . . E 2 -0.908 -8.044 33.666 1 57.72 ? CAV 29S 601 A 1 HETATM 29 C CAW 29S . . . E 2 -0.869 -9.233 34.334 1 65.48 ? CAW 29S 601 A 1 HETATM 30 C CAX 29S . . . E 2 0.308 -9.814 34.813 1 72.48 ? CAX 29S 601 A 1 HETATM 31 C CAY 29S . . . E 2 0.298 -10.998 35.55 1 81.29 ? CAY 29S 601 A 1 HETATM 32 C CAZ 29S . . . E 2 -0.888 -11.634 35.894 1 67.87 ? CAZ 29S 601 A 1 HETATM 33 O OBC 29S . . . E 2 -0.911 -12.795 36.621 1 82.83 ? OBC 29S 601 A 1 HETATM 34 C CBA 29S . . . E 2 -2.069 -11.052 35.478 1 63.37 ? CBA 29S 601 A 1 HETATM 35 C CBB 29S . . . E 2 -2.038 -9.862 34.763 1 69.74 ? CBB 29S 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #