data_4XI3
#
_model_server_result.job_id            9SMDsgh-23Rhz5k89zN9PQ 
_model_server_result.datetime_utc      '2024-11-22 20:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xi3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    4XI3 
#
_exptl.entry_id    4XI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              470.603 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Bazedoxifene 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.76 
_cell.angle_beta          75.36 
_cell.angle_gamma         63.03 
_cell.entry_id            4XI3 
_cell.length_a            53.575 
_cell.length_b            59.165 
_cell.length_c            94.144 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H34 N2 O3' 
_chem_comp.formula_weight    470.603 
_chem_comp.id                29S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Bazedoxifene 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-{4-[2-(azepan-1-yl)ethoxy]benzyl}-2-(4-hydroxyphenyl)-3-methyl-1H-indol-5-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAC 29S sing 1 n n 
CAB CAA 29S sing 2 n n 
CAC CAD 29S sing 3 n n 
CAA CAG 29S sing 4 n n 
CAD CAE 29S sing 5 n n 
CAG NAF 29S sing 6 n n 
CAE NAF 29S sing 7 n n 
NAF CAH 29S sing 8 n n 
OBI CBF 29S sing 9 n n 
CAH CAI 29S sing 10 n n 
CBF CBG 29S doub 11 n y 
CBF CBE 29S sing 12 n y 
OAJ CAI 29S sing 13 n n 
OAJ CAK 29S sing 14 n n 
CBG CAT 29S sing 15 n y 
CAP CAK 29S doub 16 n y 
CAP CAO 29S sing 17 n y 
CBE CBD 29S doub 18 n y 
CAK CAL 29S sing 19 n y 
CAT CAU 29S sing 20 n y 
CAT CAS 29S doub 21 n y 
CAO CAN 29S doub 22 n y 
CBH CAU 29S sing 23 n n 
CBD CAS 29S sing 24 n y 
CAU CAV 29S doub 25 n y 
CAS NAR 29S sing 26 n y 
CAL CAM 29S doub 27 n y 
CAV NAR 29S sing 28 n y 
CAV CAW 29S sing 29 n n 
CAN CAM 29S sing 30 n y 
CAN CAQ 29S sing 31 n n 
NAR CAQ 29S sing 32 n n 
CBB CAW 29S doub 33 n y 
CBB CBA 29S sing 34 n y 
CAW CAX 29S sing 35 n y 
CBA CAZ 29S doub 36 n y 
CAX CAY 29S doub 37 n y 
CAZ OBC 29S sing 38 n n 
CAZ CAY 29S sing 39 n y 
CAE H1 29S sing 40 n n 
CAE H2 29S sing 41 n n 
CAD H3 29S sing 42 n n 
CAD H4 29S sing 43 n n 
CAC H5 29S sing 44 n n 
CAC H6 29S sing 45 n n 
CAB H7 29S sing 46 n n 
CAB H8 29S sing 47 n n 
CAA H9 29S sing 48 n n 
CAA H10 29S sing 49 n n 
CAG H11 29S sing 50 n n 
CAG H12 29S sing 51 n n 
CAH H14 29S sing 52 n n 
CAH H15 29S sing 53 n n 
CAI H16 29S sing 54 n n 
CAI H17 29S sing 55 n n 
CAL H18 29S sing 56 n n 
CAM H19 29S sing 57 n n 
CAP H20 29S sing 58 n n 
CAO H21 29S sing 59 n n 
CAQ H22 29S sing 60 n n 
CAQ H23 29S sing 61 n n 
CBD H24 29S sing 62 n n 
CBE H25 29S sing 63 n n 
OBI H26 29S sing 64 n n 
CBG H27 29S sing 65 n n 
CBH H28 29S sing 66 n n 
CBH H29 29S sing 67 n n 
CBH H30 29S sing 68 n n 
CAX H31 29S sing 69 n n 
CAY H32 29S sing 70 n n 
OBC H33 29S sing 71 n n 
CBA H34 29S sing 72 n n 
CBB H35 29S sing 73 n n 
#
_atom_sites.entry_id                     4XI3 
_atom_sites.fract_transf_matrix[1][1]    0.018665 
_atom_sites.fract_transf_matrix[1][2]    -0.009496 
_atom_sites.fract_transf_matrix[1][3]    -0.005528 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018964 
_atom_sites.fract_transf_matrix[2][3]    0.00128 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 29S A 1 601 601 29S 29S . 
F 2 29S B 1 601 601 29S 29S . 
G 2 29S C 1 601 601 29S 29S . 
H 2 29S D 1 601 601 29S 29S . 
I 3 HOH A 1 701 701 HOH HOH . 
I 3 HOH A 2 702 703 HOH HOH . 
I 3 HOH A 3 703 706 HOH HOH . 
I 3 HOH A 4 704 710 HOH HOH . 
I 3 HOH A 5 705 705 HOH HOH . 
I 3 HOH A 6 706 712 HOH HOH . 
I 3 HOH A 7 707 713 HOH HOH . 
I 3 HOH A 8 708 708 HOH HOH . 
I 3 HOH A 9 709 711 HOH HOH . 
I 3 HOH A 10 710 714 HOH HOH . 
I 3 HOH A 11 711 702 HOH HOH . 
I 3 HOH A 12 712 709 HOH HOH . 
I 3 HOH A 13 713 715 HOH HOH . 
I 3 HOH A 14 714 717 HOH HOH . 
I 3 HOH A 15 715 716 HOH HOH . 
I 3 HOH A 16 716 704 HOH HOH . 
J 3 HOH B 1 701 706 HOH HOH . 
J 3 HOH B 2 702 708 HOH HOH . 
J 3 HOH B 3 703 710 HOH HOH . 
J 3 HOH B 4 704 711 HOH HOH . 
J 3 HOH B 5 705 709 HOH HOH . 
J 3 HOH B 6 706 712 HOH HOH . 
K 3 HOH C 1 701 703 HOH HOH . 
K 3 HOH C 2 702 702 HOH HOH . 
K 3 HOH C 3 703 705 HOH HOH . 
K 3 HOH C 4 704 706 HOH HOH . 
K 3 HOH C 5 705 707 HOH HOH . 
K 3 HOH C 6 706 709 HOH HOH . 
K 3 HOH C 7 707 704 HOH HOH . 
L 3 HOH D 1 701 705 HOH HOH . 
L 3 HOH D 2 702 702 HOH HOH . 
L 3 HOH D 3 703 703 HOH HOH . 
L 3 HOH D 4 704 704 HOH HOH . 
L 3 HOH D 5 705 706 HOH HOH . 
L 3 HOH D 6 706 710 HOH HOH . 
L 3 HOH D 7 707 707 HOH HOH . 
L 3 HOH D 8 708 708 HOH HOH . 
L 3 HOH D 9 709 709 HOH HOH . 
L 3 HOH D 10 710 705 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAE 29S . . . H 2 -32.539 -38.077 -28.072 1 76.72 ? CAE 29S 601 D 1 
HETATM 2 C CAD 29S . . . H 2 -32.127 -38.298 -26.681 1 75.12 ? CAD 29S 601 D 1 
HETATM 3 C CAC 29S . . . H 2 -32.922 -39.012 -25.567 1 75.55 ? CAC 29S 601 D 1 
HETATM 4 C CAB 29S . . . H 2 -34.164 -38.237 -25.514 1 88.37 ? CAB 29S 601 D 1 
HETATM 5 C CAA 29S . . . H 2 -34.663 -38.584 -27.035 1 62.59 ? CAA 29S 601 D 1 
HETATM 6 C CAG 29S . . . H 2 -34.173 -38.413 -28.543 1 71.72 ? CAG 29S 601 D 1 
HETATM 7 N NAF 29S . . . H 2 -32.867 -39.066 -28.998 1 68.21 ? NAF 29S 601 D 1 
HETATM 8 C CAH 29S . . . H 2 -33.192 -38.494 -30.317 1 53.84 ? CAH 29S 601 D 1 
HETATM 9 C CAI 29S . . . H 2 -32.316 -37.263 -30.604 1 59.36 ? CAI 29S 601 D 1 
HETATM 10 O OAJ 29S . . . H 2 -30.908 -37.484 -30.457 1 72.51 ? OAJ 29S 601 D 1 
HETATM 11 C CAK 29S . . . H 2 -30.102 -38.232 -31.236 1 60.31 ? CAK 29S 601 D 1 
HETATM 12 C CAL 29S . . . H 2 -30.52 -38.923 -32.363 1 45.33 ? CAL 29S 601 D 1 
HETATM 13 C CAM 29S . . . H 2 -29.567 -39.644 -33.065 1 51.21 ? CAM 29S 601 D 1 
HETATM 14 C CAP 29S . . . H 2 -28.773 -38.255 -30.836 1 50.46 ? CAP 29S 601 D 1 
HETATM 15 C CAO 29S . . . H 2 -27.824 -38.975 -31.537 1 42.61 ? CAO 29S 601 D 1 
HETATM 16 C CAN 29S . . . H 2 -28.239 -39.67 -32.662 1 55.29 ? CAN 29S 601 D 1 
HETATM 17 C CAQ 29S . . . H 2 -27.369 -40.418 -33.431 1 42.52 ? CAQ 29S 601 D 1 
HETATM 18 N NAR 29S . . . H 2 -25.969 -40.382 -32.954 1 62.98 ? NAR 29S 601 D 1 
HETATM 19 C CAS 29S . . . H 2 -25.742 -41.435 -32.129 1 62.32 ? CAS 29S 601 D 1 
HETATM 20 C CBD 29S . . . H 2 -26.52 -42.414 -31.63 1 64.97 ? CBD 29S 601 D 1 
HETATM 21 C CBE 29S . . . H 2 -26.113 -43.416 -30.742 1 63.04 ? CBE 29S 601 D 1 
HETATM 22 C CBF 29S . . . H 2 -24.791 -43.392 -30.346 1 67.22 ? CBF 29S 601 D 1 
HETATM 23 O OBI 29S . . . H 2 -24.34 -44.365 -29.467 1 66.81 ? OBI 29S 601 D 1 
HETATM 24 C CBG 29S . . . H 2 -24.014 -42.343 -30.898 1 63.72 ? CBG 29S 601 D 1 
HETATM 25 C CAT 29S . . . H 2 -24.484 -41.4 -31.762 1 59.42 ? CAT 29S 601 D 1 
HETATM 26 C CAU 29S . . . H 2 -23.948 -40.334 -32.402 1 71.15 ? CAU 29S 601 D 1 
HETATM 27 C CBH 29S . . . H 2 -22.484 -39.999 -32.198 1 62.18 ? CBH 29S 601 D 1 
HETATM 28 C CAV 29S . . . H 2 -24.811 -39.688 -33.23 1 72.84 ? CAV 29S 601 D 1 
HETATM 29 C CAW 29S . . . H 2 -24.664 -38.512 -34.043 1 65.25 ? CAW 29S 601 D 1 
HETATM 30 C CAX 29S . . . H 2 -25.841 -37.902 -34.423 1 77.6 ? CAX 29S 601 D 1 
HETATM 31 C CAY 29S . . . H 2 -26.014 -36.77 -35.163 1 91.65 ? CAY 29S 601 D 1 
HETATM 32 C CAZ 29S . . . H 2 -24.887 -36.102 -35.599 1 88.28 ? CAZ 29S 601 D 1 
HETATM 33 O OBC 29S . . . H 2 -24.969 -34.962 -36.375 1 104.08 ? OBC 29S 601 D 1 
HETATM 34 C CBA 29S . . . H 2 -23.642 -36.626 -35.262 1 85.08 ? CBA 29S 601 D 1 
HETATM 35 C CBB 29S . . . H 2 -23.56 -37.747 -34.509 1 76 ? CBB 29S 601 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#