data_4XII # _model_server_result.job_id 6GcOQ6f1Z_tyw1G3CtHUpQ _model_server_result.datetime_utc '2024-11-26 11:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1006}' # _entry.id 4XII # _exptl.entry_id 4XII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-L-fucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XII _cell.length_a 77.04 _cell.length_b 79.76 _cell.length_c 230.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XII _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,FA 1 1 B,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,GA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 -39.88 -115.43 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 M N N ? 6 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUL NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 611 NAG 2 n C NAG 2 C 2 NAG A 612 NAG 2 n C FUL 3 C 3 FUL A 613 FUL 3 n D NAG 1 D 1 NAG A 621 NAG 3 n D NAG 2 D 2 NAG A 622 NAG 3 n E NAG 1 E 1 NAG A 631 NAG 3 n E NAG 2 E 2 NAG A 632 NAG 3 n F NAG 1 F 1 NAG A 671 NAG 3 n F NAG 2 F 2 NAG A 672 NAG 3 n G NAG 1 G 1 NAG A 681 NAG 3 n G NAG 2 G 2 NAG A 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 65 B CYS 65 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 252 B CYS 252 1_555 B SG CYS 263 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 400 B CYS 400 1_555 B SG CYS 519 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 I C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale4 A ND2 ASN 341 A ASN 341 1_555 K C1 NAG . A NAG 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale5 A ND2 ASN 481 A ASN 481 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale6 A ND2 ASN 486 A ASN 486 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale7 B ND2 ASN 17 B ASN 17 1_555 T C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B ND2 ASN 57 B ASN 57 1_555 U C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale9 B ND2 ASN 256 B ASN 256 1_555 Y C1 NAG . B NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale10 B ND2 ASN 341 B ASN 341 1_555 Z C1 NAG . B NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale11 B ND2 ASN 455 B ASN 455 1_555 AA C1 NAG . B NAG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.543 ? covale ? covale12 B ND2 ASN 481 B ASN 481 1_555 BA O5 NAG . B NAG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale13 B ND2 ASN 481 B ASN 481 1_555 BA C1 NAG . B NAG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale14 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale15 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.13 ? covale ? covale16 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUL _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-fucopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms 6-DEOXY-BETA-L-GALACTOSE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUL LFucpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUL b-L-fucopyranose 'COMMON NAME' GMML 1 FUL b-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUL Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4XII _atom_sites.fract_transf_matrix[1][1] 0.01298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 40V A 1 1001 1001 40V LIG . I 5 NAG A 1 1002 601 NAG NAG . J 6 FUL A 1 1010 633 FUL FUL . K 5 NAG A 1 1011 651 NAG NAG . L 7 FUC A 1 1012 653 FUC FUC . M 6 FUL A 1 1017 683 FUL FUL . N 8 CL A 1 1018 1545 CL CL . O 8 CL A 1 1019 1546 CL CL . P 8 CL A 1 1020 1547 CL CL . Q 9 EDO A 1 1021 2 EDO EDO . R 9 EDO A 1 1022 3 EDO EDO . S 4 40V B 1 1001 1001 40V LIG . T 5 NAG B 1 1002 601 NAG NAG . U 5 NAG B 1 1003 611 NAG NAG . V 5 NAG B 1 1004 621 NAG NAG . W 5 NAG B 1 1005 631 NAG NAG . X 6 FUL B 1 1006 633 FUL FUL . Y 5 NAG B 1 1007 641 NAG NAG . Z 5 NAG B 1 1008 651 NAG NAG . AA 5 NAG B 1 1009 661 NAG NAG . BA 5 NAG B 1 1010 671 NAG NAG . CA 8 CL B 1 1011 1546 CL CL . DA 9 EDO B 1 1012 1 EDO EDO . EA 9 EDO B 1 1013 4 EDO EDO . FA 10 HOH A 1 1101 53 HOH HOH . FA 10 HOH A 2 1102 1 HOH HOH . FA 10 HOH A 3 1103 25 HOH HOH . FA 10 HOH A 4 1104 27 HOH HOH . FA 10 HOH A 5 1105 54 HOH HOH . FA 10 HOH A 6 1106 51 HOH HOH . FA 10 HOH A 7 1107 23 HOH HOH . FA 10 HOH A 8 1108 43 HOH HOH . FA 10 HOH A 9 1109 8 HOH HOH . FA 10 HOH A 10 1110 50 HOH HOH . FA 10 HOH A 11 1111 34 HOH HOH . FA 10 HOH A 12 1112 6 HOH HOH . FA 10 HOH A 13 1113 49 HOH HOH . FA 10 HOH A 14 1114 41 HOH HOH . FA 10 HOH A 15 1115 39 HOH HOH . FA 10 HOH A 16 1116 52 HOH HOH . FA 10 HOH A 17 1117 11 HOH HOH . FA 10 HOH A 18 1118 10 HOH HOH . FA 10 HOH A 19 1119 9 HOH HOH . FA 10 HOH A 20 1120 21 HOH HOH . FA 10 HOH A 21 1121 7 HOH HOH . FA 10 HOH A 22 1122 44 HOH HOH . FA 10 HOH A 23 1123 40 HOH HOH . FA 10 HOH A 24 1124 42 HOH HOH . FA 10 HOH A 25 1125 5 HOH HOH . FA 10 HOH A 26 1126 2 HOH HOH . FA 10 HOH A 27 1127 45 HOH HOH . FA 10 HOH A 28 1128 20 HOH HOH . FA 10 HOH A 29 1129 72 HOH HOH . FA 10 HOH A 30 1130 37 HOH HOH . FA 10 HOH A 31 1131 38 HOH HOH . FA 10 HOH A 32 1132 46 HOH HOH . FA 10 HOH A 33 1133 36 HOH HOH . FA 10 HOH A 34 1134 47 HOH HOH . FA 10 HOH A 35 1135 19 HOH HOH . GA 10 HOH B 1 1101 3 HOH HOH . GA 10 HOH B 2 1102 29 HOH HOH . GA 10 HOH B 3 1103 55 HOH HOH . GA 10 HOH B 4 1104 26 HOH HOH . GA 10 HOH B 5 1105 65 HOH HOH . GA 10 HOH B 6 1106 61 HOH HOH . GA 10 HOH B 7 1107 62 HOH HOH . GA 10 HOH B 8 1108 18 HOH HOH . GA 10 HOH B 9 1109 66 HOH HOH . GA 10 HOH B 10 1110 71 HOH HOH . GA 10 HOH B 11 1111 22 HOH HOH . GA 10 HOH B 12 1112 13 HOH HOH . GA 10 HOH B 13 1113 57 HOH HOH . GA 10 HOH B 14 1114 12 HOH HOH . GA 10 HOH B 15 1115 24 HOH HOH . GA 10 HOH B 16 1116 59 HOH HOH . GA 10 HOH B 17 1117 63 HOH HOH . GA 10 HOH B 18 1118 67 HOH HOH . GA 10 HOH B 19 1119 64 HOH HOH . GA 10 HOH B 20 1120 30 HOH HOH . GA 10 HOH B 21 1121 14 HOH HOH . GA 10 HOH B 22 1122 4 HOH HOH . GA 10 HOH B 23 1123 60 HOH HOH . GA 10 HOH B 24 1124 68 HOH HOH . GA 10 HOH B 25 1125 56 HOH HOH . GA 10 HOH B 26 1126 16 HOH HOH . GA 10 HOH B 27 1127 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUL . . . X 6 -17.95 3.524 -49.206 1 116.73 ? C1 FUL 1006 B 1 HETATM 2 C C2 FUL . . . X 6 -18.361 3.105 -47.8 1 112.27 ? C2 FUL 1006 B 1 HETATM 3 O O2 FUL . . . X 6 -19.342 2.065 -47.879 1 112.36 ? O2 FUL 1006 B 1 HETATM 4 C C3 FUL . . . X 6 -17.159 2.611 -47.004 1 107.22 ? C3 FUL 1006 B 1 HETATM 5 O O3 FUL . . . X 6 -17.532 2.441 -45.632 1 96.61 ? O3 FUL 1006 B 1 HETATM 6 C C4 FUL . . . X 6 -16 3.596 -47.097 1 106.72 ? C4 FUL 1006 B 1 HETATM 7 O O4 FUL . . . X 6 -16.307 4.769 -46.336 1 102.89 ? O4 FUL 1006 B 1 HETATM 8 C C5 FUL . . . X 6 -15.73 3.986 -48.546 1 100.37 ? C5 FUL 1006 B 1 HETATM 9 C C6 FUL . . . X 6 -14.622 5.028 -48.633 1 99.32 ? C6 FUL 1006 B 1 HETATM 10 O O5 FUL . . . X 6 -16.922 4.51 -49.127 1 112.3 ? O5 FUL 1006 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #