data_4XIN # _model_server_result.job_id qhyPyg3ZFGSUA8jvCNYmQA _model_server_result.datetime_utc '2024-12-03 17:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4XIN # _exptl.entry_id 4XIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.12 _cell.angle_beta 95.97 _cell.angle_gamma 97.08 _cell.entry_id 4XIN _cell.length_a 32.03 _cell.length_b 37.63 _cell.length_c 41.96 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 35 1_555 A SG CYS 126 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 B SG CYS 35 B CYS 35 1_555 B SG CYS 126 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 D O HOH . A HOH 282 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 B O SER 82 B SER 82 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 B O GLY 84 B GLY 84 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 B O GLY 87 B GLY 87 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc5 C NA NA . B NA 201 1_555 E O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc6 C NA NA . B NA 201 1_555 E O HOH . B HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XIN _atom_sites.fract_transf_matrix[1][1] 0.031221 _atom_sites.fract_transf_matrix[1][2] 0.003877 _atom_sites.fract_transf_matrix[1][3] 0.005003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026779 _atom_sites.fract_transf_matrix[2][3] 0.010381 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 201 1 NA NA . D 3 HOH A 1 201 127 HOH HOH . D 3 HOH A 2 202 145 HOH HOH . D 3 HOH A 3 203 111 HOH HOH . D 3 HOH A 4 204 118 HOH HOH . D 3 HOH A 5 205 75 HOH HOH . D 3 HOH A 6 206 61 HOH HOH . D 3 HOH A 7 207 163 HOH HOH . D 3 HOH A 8 208 94 HOH HOH . D 3 HOH A 9 209 3 HOH HOH . D 3 HOH A 10 210 137 HOH HOH . D 3 HOH A 11 211 115 HOH HOH . D 3 HOH A 12 212 34 HOH HOH . D 3 HOH A 13 213 105 HOH HOH . D 3 HOH A 14 214 78 HOH HOH . D 3 HOH A 15 215 84 HOH HOH . D 3 HOH A 16 216 116 HOH HOH . D 3 HOH A 17 217 41 HOH HOH . D 3 HOH A 18 218 130 HOH HOH . D 3 HOH A 19 219 125 HOH HOH . D 3 HOH A 20 220 98 HOH HOH . D 3 HOH A 21 221 64 HOH HOH . D 3 HOH A 22 222 79 HOH HOH . D 3 HOH A 23 223 180 HOH HOH . D 3 HOH A 24 224 17 HOH HOH . D 3 HOH A 25 225 104 HOH HOH . D 3 HOH A 26 226 133 HOH HOH . D 3 HOH A 27 227 82 HOH HOH . D 3 HOH A 28 228 69 HOH HOH . D 3 HOH A 29 229 153 HOH HOH . D 3 HOH A 30 230 21 HOH HOH . D 3 HOH A 31 231 18 HOH HOH . D 3 HOH A 32 232 93 HOH HOH . D 3 HOH A 33 233 109 HOH HOH . D 3 HOH A 34 234 20 HOH HOH . D 3 HOH A 35 235 54 HOH HOH . D 3 HOH A 36 236 120 HOH HOH . D 3 HOH A 37 237 32 HOH HOH . D 3 HOH A 38 238 83 HOH HOH . D 3 HOH A 39 239 45 HOH HOH . D 3 HOH A 40 240 89 HOH HOH . D 3 HOH A 41 241 102 HOH HOH . D 3 HOH A 42 242 159 HOH HOH . D 3 HOH A 43 243 71 HOH HOH . D 3 HOH A 44 244 106 HOH HOH . D 3 HOH A 45 245 108 HOH HOH . D 3 HOH A 46 246 65 HOH HOH . D 3 HOH A 47 247 179 HOH HOH . D 3 HOH A 48 248 103 HOH HOH . D 3 HOH A 49 249 132 HOH HOH . D 3 HOH A 50 250 172 HOH HOH . D 3 HOH A 51 251 156 HOH HOH . D 3 HOH A 52 252 68 HOH HOH . D 3 HOH A 53 253 134 HOH HOH . D 3 HOH A 54 254 5 HOH HOH . D 3 HOH A 55 255 8 HOH HOH . D 3 HOH A 56 256 12 HOH HOH . D 3 HOH A 57 257 14 HOH HOH . D 3 HOH A 58 258 15 HOH HOH . D 3 HOH A 59 259 16 HOH HOH . D 3 HOH A 60 260 19 HOH HOH . D 3 HOH A 61 261 23 HOH HOH . D 3 HOH A 62 262 25 HOH HOH . D 3 HOH A 63 263 26 HOH HOH . D 3 HOH A 64 264 29 HOH HOH . D 3 HOH A 65 265 31 HOH HOH . D 3 HOH A 66 266 40 HOH HOH . D 3 HOH A 67 267 42 HOH HOH . D 3 HOH A 68 268 49 HOH HOH . D 3 HOH A 69 269 50 HOH HOH . D 3 HOH A 70 270 52 HOH HOH . D 3 HOH A 71 271 53 HOH HOH . D 3 HOH A 72 272 55 HOH HOH . D 3 HOH A 73 273 56 HOH HOH . D 3 HOH A 74 274 57 HOH HOH . D 3 HOH A 75 275 60 HOH HOH . D 3 HOH A 76 276 66 HOH HOH . D 3 HOH A 77 277 67 HOH HOH . D 3 HOH A 78 278 73 HOH HOH . D 3 HOH A 79 279 74 HOH HOH . D 3 HOH A 80 280 86 HOH HOH . D 3 HOH A 81 281 87 HOH HOH . D 3 HOH A 82 282 95 HOH HOH . D 3 HOH A 83 283 99 HOH HOH . D 3 HOH A 84 284 107 HOH HOH . D 3 HOH A 85 285 114 HOH HOH . D 3 HOH A 86 286 119 HOH HOH . D 3 HOH A 87 287 121 HOH HOH . D 3 HOH A 88 288 128 HOH HOH . D 3 HOH A 89 289 131 HOH HOH . D 3 HOH A 90 290 135 HOH HOH . D 3 HOH A 91 291 136 HOH HOH . D 3 HOH A 92 292 139 HOH HOH . D 3 HOH A 93 293 141 HOH HOH . D 3 HOH A 94 294 157 HOH HOH . D 3 HOH A 95 295 158 HOH HOH . D 3 HOH A 96 296 160 HOH HOH . D 3 HOH A 97 297 161 HOH HOH . D 3 HOH A 98 298 182 HOH HOH . E 3 HOH B 1 301 166 HOH HOH . E 3 HOH B 2 302 173 HOH HOH . E 3 HOH B 3 303 100 HOH HOH . E 3 HOH B 4 304 170 HOH HOH . E 3 HOH B 5 305 147 HOH HOH . E 3 HOH B 6 306 81 HOH HOH . E 3 HOH B 7 307 39 HOH HOH . E 3 HOH B 8 308 122 HOH HOH . E 3 HOH B 9 309 62 HOH HOH . E 3 HOH B 10 310 152 HOH HOH . E 3 HOH B 11 311 123 HOH HOH . E 3 HOH B 12 312 164 HOH HOH . E 3 HOH B 13 313 140 HOH HOH . E 3 HOH B 14 314 2 HOH HOH . E 3 HOH B 15 315 59 HOH HOH . E 3 HOH B 16 316 6 HOH HOH . E 3 HOH B 17 317 185 HOH HOH . E 3 HOH B 18 318 96 HOH HOH . E 3 HOH B 19 319 146 HOH HOH . E 3 HOH B 20 320 154 HOH HOH . E 3 HOH B 21 321 124 HOH HOH . E 3 HOH B 22 322 70 HOH HOH . E 3 HOH B 23 323 46 HOH HOH . E 3 HOH B 24 324 110 HOH HOH . E 3 HOH B 25 325 144 HOH HOH . E 3 HOH B 26 326 4 HOH HOH . E 3 HOH B 27 327 63 HOH HOH . E 3 HOH B 28 328 91 HOH HOH . E 3 HOH B 29 329 80 HOH HOH . E 3 HOH B 30 330 90 HOH HOH . E 3 HOH B 31 331 43 HOH HOH . E 3 HOH B 32 332 126 HOH HOH . E 3 HOH B 33 333 44 HOH HOH . E 3 HOH B 34 334 155 HOH HOH . E 3 HOH B 35 335 48 HOH HOH . E 3 HOH B 36 336 178 HOH HOH . E 3 HOH B 37 337 149 HOH HOH . E 3 HOH B 38 338 167 HOH HOH . E 3 HOH B 39 339 72 HOH HOH . E 3 HOH B 40 340 129 HOH HOH . E 3 HOH B 41 341 165 HOH HOH . E 3 HOH B 42 342 171 HOH HOH . E 3 HOH B 43 343 162 HOH HOH . E 3 HOH B 44 344 85 HOH HOH . E 3 HOH B 45 345 113 HOH HOH . E 3 HOH B 46 346 181 HOH HOH . E 3 HOH B 47 347 1 HOH HOH . E 3 HOH B 48 348 7 HOH HOH . E 3 HOH B 49 349 9 HOH HOH . E 3 HOH B 50 350 10 HOH HOH . E 3 HOH B 51 351 11 HOH HOH . E 3 HOH B 52 352 13 HOH HOH . E 3 HOH B 53 353 22 HOH HOH . E 3 HOH B 54 354 24 HOH HOH . E 3 HOH B 55 355 27 HOH HOH . E 3 HOH B 56 356 28 HOH HOH . E 3 HOH B 57 357 30 HOH HOH . E 3 HOH B 58 358 33 HOH HOH . E 3 HOH B 59 359 35 HOH HOH . E 3 HOH B 60 360 36 HOH HOH . E 3 HOH B 61 361 37 HOH HOH . E 3 HOH B 62 362 38 HOH HOH . E 3 HOH B 63 363 47 HOH HOH . E 3 HOH B 64 364 51 HOH HOH . E 3 HOH B 65 365 58 HOH HOH . E 3 HOH B 66 366 76 HOH HOH . E 3 HOH B 67 367 77 HOH HOH . E 3 HOH B 68 368 88 HOH HOH . E 3 HOH B 69 369 92 HOH HOH . E 3 HOH B 70 370 97 HOH HOH . E 3 HOH B 71 371 101 HOH HOH . E 3 HOH B 72 372 112 HOH HOH . E 3 HOH B 73 373 117 HOH HOH . E 3 HOH B 74 374 138 HOH HOH . E 3 HOH B 75 375 142 HOH HOH . E 3 HOH B 76 376 143 HOH HOH . E 3 HOH B 77 377 148 HOH HOH . E 3 HOH B 78 378 150 HOH HOH . E 3 HOH B 79 379 151 HOH HOH . E 3 HOH B 80 380 168 HOH HOH . E 3 HOH B 81 381 169 HOH HOH . E 3 HOH B 82 382 174 HOH HOH . E 3 HOH B 83 383 175 HOH HOH . E 3 HOH B 84 384 176 HOH HOH . E 3 HOH B 85 385 177 HOH HOH . E 3 HOH B 86 386 183 HOH HOH . E 3 HOH B 87 387 184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.206 _atom_site.Cartn_y 18.499 _atom_site.Cartn_z 28.598 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #