data_4XIP # _model_server_result.job_id 85RtAfiiLuwEgCv-oZ2uow _model_server_result.datetime_utc '2025-07-02 07:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XIP # _exptl.entry_id 4XIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3,6,6-trimethyl-4-oxo-4,5,6,7-tetrahydro-1H-indol-1-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XIP _cell.length_a 66.882 _cell.length_b 90.929 _cell.length_c 98.955 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O2' _chem_comp.formula_weight 296.364 _chem_comp.id 40W _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3,6,6-trimethyl-4-oxo-4,5,6,7-tetrahydro-1H-indol-1-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C7 40W sing 1 n n N1 C17 40W sing 2 n n C9 C7 40W sing 3 n n C7 C8 40W sing 4 n n C7 C6 40W sing 5 n n C13 C12 40W doub 6 n y C13 C14 40W sing 7 n y C17 C14 40W sing 8 n n C17 O1 40W doub 9 n n C12 C11 40W sing 10 n y C8 C3 40W sing 11 n n C14 C15 40W doub 12 n y C6 C5 40W sing 13 n n C5 O 40W doub 14 n n C5 C4 40W sing 15 n n C3 C4 40W doub 16 n y C3 N 40W sing 17 n y C11 N 40W sing 18 n n C11 C16 40W doub 19 n y C4 C1 40W sing 20 n y C15 C16 40W sing 21 n y N C2 40W sing 22 n y C1 C2 40W doub 23 n y C1 C 40W sing 24 n n N1 H1 40W sing 25 n n N1 H2 40W sing 26 n n C6 H3 40W sing 27 n n C6 H4 40W sing 28 n n C8 H5 40W sing 29 n n C8 H6 40W sing 30 n n C10 H7 40W sing 31 n n C10 H8 40W sing 32 n n C10 H9 40W sing 33 n n C13 H10 40W sing 34 n n C15 H11 40W sing 35 n n C12 H12 40W sing 36 n n C16 H13 40W sing 37 n n C2 H14 40W sing 38 n n C9 H15 40W sing 39 n n C9 H16 40W sing 40 n n C9 H17 40W sing 41 n n C H18 40W sing 42 n n C H19 40W sing 43 n n C H20 40W sing 44 n n # _atom_sites.entry_id 4XIP _atom_sites.fract_transf_matrix[1][1] 0.014952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 40W A 1 301 999 40W LIG . C 3 HOH A 1 401 5 HOH HOH . C 3 HOH A 2 402 52 HOH HOH . C 3 HOH A 3 403 178 HOH HOH . C 3 HOH A 4 404 49 HOH HOH . C 3 HOH A 5 405 157 HOH HOH . C 3 HOH A 6 406 162 HOH HOH . C 3 HOH A 7 407 22 HOH HOH . C 3 HOH A 8 408 138 HOH HOH . C 3 HOH A 9 409 82 HOH HOH . C 3 HOH A 10 410 201 HOH HOH . C 3 HOH A 11 411 36 HOH HOH . C 3 HOH A 12 412 99 HOH HOH . C 3 HOH A 13 413 169 HOH HOH . C 3 HOH A 14 414 45 HOH HOH . C 3 HOH A 15 415 81 HOH HOH . C 3 HOH A 16 416 101 HOH HOH . C 3 HOH A 17 417 142 HOH HOH . C 3 HOH A 18 418 44 HOH HOH . C 3 HOH A 19 419 185 HOH HOH . C 3 HOH A 20 420 23 HOH HOH . C 3 HOH A 21 421 219 HOH HOH . C 3 HOH A 22 422 153 HOH HOH . C 3 HOH A 23 423 31 HOH HOH . C 3 HOH A 24 424 61 HOH HOH . C 3 HOH A 25 425 58 HOH HOH . C 3 HOH A 26 426 24 HOH HOH . C 3 HOH A 27 427 33 HOH HOH . C 3 HOH A 28 428 63 HOH HOH . C 3 HOH A 29 429 98 HOH HOH . C 3 HOH A 30 430 118 HOH HOH . C 3 HOH A 31 431 69 HOH HOH . C 3 HOH A 32 432 163 HOH HOH . C 3 HOH A 33 433 65 HOH HOH . C 3 HOH A 34 434 205 HOH HOH . C 3 HOH A 35 435 106 HOH HOH . C 3 HOH A 36 436 165 HOH HOH . C 3 HOH A 37 437 115 HOH HOH . C 3 HOH A 38 438 146 HOH HOH . C 3 HOH A 39 439 139 HOH HOH . C 3 HOH A 40 440 217 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 107 HOH HOH . C 3 HOH A 43 443 32 HOH HOH . C 3 HOH A 44 444 86 HOH HOH . C 3 HOH A 45 445 96 HOH HOH . C 3 HOH A 46 446 105 HOH HOH . C 3 HOH A 47 447 2 HOH HOH . C 3 HOH A 48 448 167 HOH HOH . C 3 HOH A 49 449 71 HOH HOH . C 3 HOH A 50 450 130 HOH HOH . C 3 HOH A 51 451 172 HOH HOH . C 3 HOH A 52 452 202 HOH HOH . C 3 HOH A 53 453 83 HOH HOH . C 3 HOH A 54 454 195 HOH HOH . C 3 HOH A 55 455 191 HOH HOH . C 3 HOH A 56 456 215 HOH HOH . C 3 HOH A 57 457 196 HOH HOH . C 3 HOH A 58 458 57 HOH HOH . C 3 HOH A 59 459 186 HOH HOH . C 3 HOH A 60 460 30 HOH HOH . C 3 HOH A 61 461 144 HOH HOH . C 3 HOH A 62 462 197 HOH HOH . C 3 HOH A 63 463 114 HOH HOH . C 3 HOH A 64 464 1 HOH HOH . C 3 HOH A 65 465 3 HOH HOH . C 3 HOH A 66 466 4 HOH HOH . C 3 HOH A 67 467 6 HOH HOH . C 3 HOH A 68 468 7 HOH HOH . C 3 HOH A 69 469 8 HOH HOH . C 3 HOH A 70 470 9 HOH HOH . C 3 HOH A 71 471 10 HOH HOH . C 3 HOH A 72 472 11 HOH HOH . C 3 HOH A 73 473 12 HOH HOH . C 3 HOH A 74 474 13 HOH HOH . C 3 HOH A 75 475 14 HOH HOH . C 3 HOH A 76 476 15 HOH HOH . C 3 HOH A 77 477 16 HOH HOH . C 3 HOH A 78 478 17 HOH HOH . C 3 HOH A 79 479 18 HOH HOH . C 3 HOH A 80 480 19 HOH HOH . C 3 HOH A 81 481 20 HOH HOH . C 3 HOH A 82 482 21 HOH HOH . C 3 HOH A 83 483 25 HOH HOH . C 3 HOH A 84 484 26 HOH HOH . C 3 HOH A 85 485 27 HOH HOH . C 3 HOH A 86 486 28 HOH HOH . C 3 HOH A 87 487 29 HOH HOH . C 3 HOH A 88 488 34 HOH HOH . C 3 HOH A 89 489 35 HOH HOH . C 3 HOH A 90 490 37 HOH HOH . C 3 HOH A 91 491 38 HOH HOH . C 3 HOH A 92 492 39 HOH HOH . C 3 HOH A 93 493 40 HOH HOH . C 3 HOH A 94 494 42 HOH HOH . C 3 HOH A 95 495 43 HOH HOH . C 3 HOH A 96 496 46 HOH HOH . C 3 HOH A 97 497 47 HOH HOH . C 3 HOH A 98 498 48 HOH HOH . C 3 HOH A 99 499 50 HOH HOH . C 3 HOH A 100 500 53 HOH HOH . C 3 HOH A 101 501 54 HOH HOH . C 3 HOH A 102 502 55 HOH HOH . C 3 HOH A 103 503 56 HOH HOH . C 3 HOH A 104 504 59 HOH HOH . C 3 HOH A 105 505 60 HOH HOH . C 3 HOH A 106 506 62 HOH HOH . C 3 HOH A 107 507 64 HOH HOH . C 3 HOH A 108 508 66 HOH HOH . C 3 HOH A 109 509 67 HOH HOH . C 3 HOH A 110 510 68 HOH HOH . C 3 HOH A 111 511 70 HOH HOH . C 3 HOH A 112 512 72 HOH HOH . C 3 HOH A 113 513 73 HOH HOH . C 3 HOH A 114 514 74 HOH HOH . C 3 HOH A 115 515 75 HOH HOH . C 3 HOH A 116 516 76 HOH HOH . C 3 HOH A 117 517 77 HOH HOH . C 3 HOH A 118 518 78 HOH HOH . C 3 HOH A 119 519 79 HOH HOH . C 3 HOH A 120 520 80 HOH HOH . C 3 HOH A 121 521 84 HOH HOH . C 3 HOH A 122 522 85 HOH HOH . C 3 HOH A 123 523 87 HOH HOH . C 3 HOH A 124 524 88 HOH HOH . C 3 HOH A 125 525 89 HOH HOH . C 3 HOH A 126 526 90 HOH HOH . C 3 HOH A 127 527 91 HOH HOH . C 3 HOH A 128 528 92 HOH HOH . C 3 HOH A 129 529 93 HOH HOH . C 3 HOH A 130 530 94 HOH HOH . C 3 HOH A 131 531 95 HOH HOH . C 3 HOH A 132 532 97 HOH HOH . C 3 HOH A 133 533 100 HOH HOH . C 3 HOH A 134 534 102 HOH HOH . C 3 HOH A 135 535 103 HOH HOH . C 3 HOH A 136 536 104 HOH HOH . C 3 HOH A 137 537 108 HOH HOH . C 3 HOH A 138 538 109 HOH HOH . C 3 HOH A 139 539 110 HOH HOH . C 3 HOH A 140 540 111 HOH HOH . C 3 HOH A 141 541 112 HOH HOH . C 3 HOH A 142 542 113 HOH HOH . C 3 HOH A 143 543 116 HOH HOH . C 3 HOH A 144 544 117 HOH HOH . C 3 HOH A 145 545 119 HOH HOH . C 3 HOH A 146 546 120 HOH HOH . C 3 HOH A 147 547 122 HOH HOH . C 3 HOH A 148 548 123 HOH HOH . C 3 HOH A 149 549 124 HOH HOH . C 3 HOH A 150 550 125 HOH HOH . C 3 HOH A 151 551 126 HOH HOH . C 3 HOH A 152 552 127 HOH HOH . C 3 HOH A 153 553 128 HOH HOH . C 3 HOH A 154 554 129 HOH HOH . C 3 HOH A 155 555 131 HOH HOH . C 3 HOH A 156 556 132 HOH HOH . C 3 HOH A 157 557 133 HOH HOH . C 3 HOH A 158 558 135 HOH HOH . C 3 HOH A 159 559 136 HOH HOH . C 3 HOH A 160 560 137 HOH HOH . C 3 HOH A 161 561 140 HOH HOH . C 3 HOH A 162 562 141 HOH HOH . C 3 HOH A 163 563 143 HOH HOH . C 3 HOH A 164 564 145 HOH HOH . C 3 HOH A 165 565 147 HOH HOH . C 3 HOH A 166 566 148 HOH HOH . C 3 HOH A 167 567 149 HOH HOH . C 3 HOH A 168 568 150 HOH HOH . C 3 HOH A 169 569 152 HOH HOH . C 3 HOH A 170 570 155 HOH HOH . C 3 HOH A 171 571 156 HOH HOH . C 3 HOH A 172 572 158 HOH HOH . C 3 HOH A 173 573 159 HOH HOH . C 3 HOH A 174 574 161 HOH HOH . C 3 HOH A 175 575 164 HOH HOH . C 3 HOH A 176 576 166 HOH HOH . C 3 HOH A 177 577 170 HOH HOH . C 3 HOH A 178 578 173 HOH HOH . C 3 HOH A 179 579 174 HOH HOH . C 3 HOH A 180 580 176 HOH HOH . C 3 HOH A 181 581 179 HOH HOH . C 3 HOH A 182 582 180 HOH HOH . C 3 HOH A 183 583 181 HOH HOH . C 3 HOH A 184 584 182 HOH HOH . C 3 HOH A 185 585 183 HOH HOH . C 3 HOH A 186 586 187 HOH HOH . C 3 HOH A 187 587 188 HOH HOH . C 3 HOH A 188 588 190 HOH HOH . C 3 HOH A 189 589 192 HOH HOH . C 3 HOH A 190 590 193 HOH HOH . C 3 HOH A 191 591 194 HOH HOH . C 3 HOH A 192 592 198 HOH HOH . C 3 HOH A 193 593 199 HOH HOH . C 3 HOH A 194 594 200 HOH HOH . C 3 HOH A 195 595 209 HOH HOH . C 3 HOH A 196 596 210 HOH HOH . C 3 HOH A 197 597 211 HOH HOH . C 3 HOH A 198 598 216 HOH HOH . C 3 HOH A 199 599 220 HOH HOH . C 3 HOH A 200 600 221 HOH HOH . C 3 HOH A 201 601 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 40W . . . B 2 -1.619 -10.603 -26.225 1 3 ? N1 40W 301 A 1 HETATM 2 C C4 40W . . . B 2 6.507 -11.969 -24.084 1 4.41 ? C4 40W 301 A 1 HETATM 3 C C5 40W . . . B 2 7.594 -12.93 -24.33 1 5.63 ? C5 40W 301 A 1 HETATM 4 C C6 40W . . . B 2 7.221 -14.339 -24.738 1 4.08 ? C6 40W 301 A 1 HETATM 5 C C7 40W . . . B 2 5.939 -14.46 -25.58 1 4.09 ? C7 40W 301 A 1 HETATM 6 C C8 40W . . . B 2 4.809 -13.726 -24.85 1 5.27 ? C8 40W 301 A 1 HETATM 7 C C10 40W . . . B 2 6.162 -13.85 -26.968 1 3.72 ? C10 40W 301 A 1 HETATM 8 C C13 40W . . . B 2 1.035 -10.162 -25.228 1 3.57 ? C13 40W 301 A 1 HETATM 9 C C15 40W . . . B 2 0.75 -12.247 -24.047 1 3.86 ? C15 40W 301 A 1 HETATM 10 C C17 40W . . . B 2 -1.262 -11.168 -25.103 1 5.17 ? C17 40W 301 A 1 HETATM 11 O O1 40W . . . B 2 -2.083 -11.703 -24.318 1 7.48 ? O1 40W 301 A 1 HETATM 12 C C14 40W . . . B 2 0.196 -11.191 -24.779 1 3.05 ? C14 40W 301 A 1 HETATM 13 C C12 40W . . . B 2 2.396 -10.193 -24.97 1 3.69 ? C12 40W 301 A 1 HETATM 14 C C16 40W . . . B 2 2.108 -12.28 -23.777 1 3.8 ? C16 40W 301 A 1 HETATM 15 C C11 40W . . . B 2 2.942 -11.258 -24.251 1 3.57 ? C11 40W 301 A 1 HETATM 16 N N 40W . . . B 2 4.363 -11.316 -24.022 1 4.95 ? N 40W 301 A 1 HETATM 17 C C2 40W . . . B 2 5.145 -10.248 -23.619 1 5.4 ? C2 40W 301 A 1 HETATM 18 C C3 40W . . . B 2 5.207 -12.381 -24.316 1 4.08 ? C3 40W 301 A 1 HETATM 19 C C9 40W . . . B 2 5.558 -15.928 -25.751 1 4.57 ? C9 40W 301 A 1 HETATM 20 O O 40W . . . B 2 8.771 -12.592 -24.268 1 7.02 ? O 40W 301 A 1 HETATM 21 C C1 40W . . . B 2 6.457 -10.601 -23.641 1 4.83 ? C1 40W 301 A 1 HETATM 22 C C 40W . . . B 2 7.605 -9.695 -23.28 1 6.25 ? C 40W 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #