data_4XIQ # _model_server_result.job_id -L7AJciGlNdEo3BUu4q9Mg _model_server_result.datetime_utc '2024-10-13 02:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xiq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4XIQ # _exptl.entry_id 4XIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XIQ _cell.length_a 66.837 _cell.length_b 90.977 _cell.length_c 99.056 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 4XIQ _atom_sites.fract_transf_matrix[1][1] 0.014962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 40Y A 1 301 999 40Y LIG . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 4 HOH A 1 401 167 HOH HOH . E 4 HOH A 2 402 55 HOH HOH . E 4 HOH A 3 403 56 HOH HOH . E 4 HOH A 4 404 71 HOH HOH . E 4 HOH A 5 405 9 HOH HOH . E 4 HOH A 6 406 1 HOH HOH . E 4 HOH A 7 407 86 HOH HOH . E 4 HOH A 8 408 119 HOH HOH . E 4 HOH A 9 409 33 HOH HOH . E 4 HOH A 10 410 53 HOH HOH . E 4 HOH A 11 411 67 HOH HOH . E 4 HOH A 12 412 79 HOH HOH . E 4 HOH A 13 413 170 HOH HOH . E 4 HOH A 14 414 159 HOH HOH . E 4 HOH A 15 415 100 HOH HOH . E 4 HOH A 16 416 154 HOH HOH . E 4 HOH A 17 417 60 HOH HOH . E 4 HOH A 18 418 133 HOH HOH . E 4 HOH A 19 419 129 HOH HOH . E 4 HOH A 20 420 92 HOH HOH . E 4 HOH A 21 421 102 HOH HOH . E 4 HOH A 22 422 65 HOH HOH . E 4 HOH A 23 423 137 HOH HOH . E 4 HOH A 24 424 98 HOH HOH . E 4 HOH A 25 425 84 HOH HOH . E 4 HOH A 26 426 162 HOH HOH . E 4 HOH A 27 427 36 HOH HOH . E 4 HOH A 28 428 157 HOH HOH . E 4 HOH A 29 429 135 HOH HOH . E 4 HOH A 30 430 127 HOH HOH . E 4 HOH A 31 431 145 HOH HOH . E 4 HOH A 32 432 40 HOH HOH . E 4 HOH A 33 433 116 HOH HOH . E 4 HOH A 34 434 107 HOH HOH . E 4 HOH A 35 435 149 HOH HOH . E 4 HOH A 36 436 59 HOH HOH . E 4 HOH A 37 437 139 HOH HOH . E 4 HOH A 38 438 136 HOH HOH . E 4 HOH A 39 439 168 HOH HOH . E 4 HOH A 40 440 169 HOH HOH . E 4 HOH A 41 441 3 HOH HOH . E 4 HOH A 42 442 142 HOH HOH . E 4 HOH A 43 443 39 HOH HOH . E 4 HOH A 44 444 70 HOH HOH . E 4 HOH A 45 445 77 HOH HOH . E 4 HOH A 46 446 101 HOH HOH . E 4 HOH A 47 447 132 HOH HOH . E 4 HOH A 48 448 78 HOH HOH . E 4 HOH A 49 449 2 HOH HOH . E 4 HOH A 50 450 4 HOH HOH . E 4 HOH A 51 451 5 HOH HOH . E 4 HOH A 52 452 7 HOH HOH . E 4 HOH A 53 453 8 HOH HOH . E 4 HOH A 54 454 10 HOH HOH . E 4 HOH A 55 455 11 HOH HOH . E 4 HOH A 56 456 12 HOH HOH . E 4 HOH A 57 457 13 HOH HOH . E 4 HOH A 58 458 14 HOH HOH . E 4 HOH A 59 459 15 HOH HOH . E 4 HOH A 60 460 16 HOH HOH . E 4 HOH A 61 461 17 HOH HOH . E 4 HOH A 62 462 18 HOH HOH . E 4 HOH A 63 463 19 HOH HOH . E 4 HOH A 64 464 20 HOH HOH . E 4 HOH A 65 465 21 HOH HOH . E 4 HOH A 66 466 22 HOH HOH . E 4 HOH A 67 467 23 HOH HOH . E 4 HOH A 68 468 24 HOH HOH . E 4 HOH A 69 469 25 HOH HOH . E 4 HOH A 70 470 26 HOH HOH . E 4 HOH A 71 471 27 HOH HOH . E 4 HOH A 72 472 28 HOH HOH . E 4 HOH A 73 473 29 HOH HOH . E 4 HOH A 74 474 30 HOH HOH . E 4 HOH A 75 475 31 HOH HOH . E 4 HOH A 76 476 32 HOH HOH . E 4 HOH A 77 477 34 HOH HOH . E 4 HOH A 78 478 35 HOH HOH . E 4 HOH A 79 479 37 HOH HOH . E 4 HOH A 80 480 38 HOH HOH . E 4 HOH A 81 481 41 HOH HOH . E 4 HOH A 82 482 42 HOH HOH . E 4 HOH A 83 483 43 HOH HOH . E 4 HOH A 84 484 44 HOH HOH . E 4 HOH A 85 485 45 HOH HOH . E 4 HOH A 86 486 46 HOH HOH . E 4 HOH A 87 487 47 HOH HOH . E 4 HOH A 88 488 48 HOH HOH . E 4 HOH A 89 489 49 HOH HOH . E 4 HOH A 90 490 50 HOH HOH . E 4 HOH A 91 491 51 HOH HOH . E 4 HOH A 92 492 52 HOH HOH . E 4 HOH A 93 493 54 HOH HOH . E 4 HOH A 94 494 57 HOH HOH . E 4 HOH A 95 495 58 HOH HOH . E 4 HOH A 96 496 61 HOH HOH . E 4 HOH A 97 497 62 HOH HOH . E 4 HOH A 98 498 63 HOH HOH . E 4 HOH A 99 499 64 HOH HOH . E 4 HOH A 100 500 66 HOH HOH . E 4 HOH A 101 501 68 HOH HOH . E 4 HOH A 102 502 69 HOH HOH . E 4 HOH A 103 503 72 HOH HOH . E 4 HOH A 104 504 73 HOH HOH . E 4 HOH A 105 505 74 HOH HOH . E 4 HOH A 106 506 75 HOH HOH . E 4 HOH A 107 507 76 HOH HOH . E 4 HOH A 108 508 80 HOH HOH . E 4 HOH A 109 509 81 HOH HOH . E 4 HOH A 110 510 82 HOH HOH . E 4 HOH A 111 511 83 HOH HOH . E 4 HOH A 112 512 85 HOH HOH . E 4 HOH A 113 513 87 HOH HOH . E 4 HOH A 114 514 88 HOH HOH . E 4 HOH A 115 515 89 HOH HOH . E 4 HOH A 116 516 90 HOH HOH . E 4 HOH A 117 517 91 HOH HOH . E 4 HOH A 118 518 93 HOH HOH . E 4 HOH A 119 519 94 HOH HOH . E 4 HOH A 120 520 95 HOH HOH . E 4 HOH A 121 521 96 HOH HOH . E 4 HOH A 122 522 97 HOH HOH . E 4 HOH A 123 523 99 HOH HOH . E 4 HOH A 124 524 103 HOH HOH . E 4 HOH A 125 525 104 HOH HOH . E 4 HOH A 126 526 105 HOH HOH . E 4 HOH A 127 527 106 HOH HOH . E 4 HOH A 128 528 108 HOH HOH . E 4 HOH A 129 529 109 HOH HOH . E 4 HOH A 130 530 111 HOH HOH . E 4 HOH A 131 531 112 HOH HOH . E 4 HOH A 132 532 113 HOH HOH . E 4 HOH A 133 533 114 HOH HOH . E 4 HOH A 134 534 115 HOH HOH . E 4 HOH A 135 535 117 HOH HOH . E 4 HOH A 136 536 118 HOH HOH . E 4 HOH A 137 537 120 HOH HOH . E 4 HOH A 138 538 121 HOH HOH . E 4 HOH A 139 539 122 HOH HOH . E 4 HOH A 140 540 123 HOH HOH . E 4 HOH A 141 541 124 HOH HOH . E 4 HOH A 142 542 125 HOH HOH . E 4 HOH A 143 543 126 HOH HOH . E 4 HOH A 144 544 128 HOH HOH . E 4 HOH A 145 545 130 HOH HOH . E 4 HOH A 146 546 131 HOH HOH . E 4 HOH A 147 547 134 HOH HOH . E 4 HOH A 148 548 138 HOH HOH . E 4 HOH A 149 549 141 HOH HOH . E 4 HOH A 150 550 143 HOH HOH . E 4 HOH A 151 551 144 HOH HOH . E 4 HOH A 152 552 146 HOH HOH . E 4 HOH A 153 553 147 HOH HOH . E 4 HOH A 154 554 148 HOH HOH . E 4 HOH A 155 555 150 HOH HOH . E 4 HOH A 156 556 152 HOH HOH . E 4 HOH A 157 557 155 HOH HOH . E 4 HOH A 158 558 156 HOH HOH . E 4 HOH A 159 559 161 HOH HOH . E 4 HOH A 160 560 164 HOH HOH . E 4 HOH A 161 561 166 HOH HOH . E 4 HOH A 162 562 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 1.333 -5.475 -30.301 1 44.83 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 3 1.843 -4.271 -30.841 1 45.2 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 3 2.405 -6.278 -29.6 1 44.15 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 3 2.957 -5.502 -28.535 1 44.92 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 3 1.686 -7.479 -29.034 1 42.8 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 3 2.476 -8.21 -28.112 1 41.08 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #