data_4XIT # _model_server_result.job_id F0mdHLmDkcAlR0nNFC2Tjg _model_server_result.datetime_utc '2025-02-05 14:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4XIT # _exptl.entry_id 4XIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XIT _cell.length_a 66.853 _cell.length_b 91.333 _cell.length_c 98.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 4XIT _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 40Z A 1 301 999 40Z LIG . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 70 HOH HOH . D 4 HOH A 2 402 35 HOH HOH . D 4 HOH A 3 403 36 HOH HOH . D 4 HOH A 4 404 2 HOH HOH . D 4 HOH A 5 405 19 HOH HOH . D 4 HOH A 6 406 24 HOH HOH . D 4 HOH A 7 407 43 HOH HOH . D 4 HOH A 8 408 27 HOH HOH . D 4 HOH A 9 409 57 HOH HOH . D 4 HOH A 10 410 34 HOH HOH . D 4 HOH A 11 411 20 HOH HOH . D 4 HOH A 12 412 55 HOH HOH . D 4 HOH A 13 413 69 HOH HOH . D 4 HOH A 14 414 131 HOH HOH . D 4 HOH A 15 415 162 HOH HOH . D 4 HOH A 16 416 123 HOH HOH . D 4 HOH A 17 417 159 HOH HOH . D 4 HOH A 18 418 81 HOH HOH . D 4 HOH A 19 419 75 HOH HOH . D 4 HOH A 20 420 155 HOH HOH . D 4 HOH A 21 421 120 HOH HOH . D 4 HOH A 22 422 160 HOH HOH . D 4 HOH A 23 423 56 HOH HOH . D 4 HOH A 24 424 132 HOH HOH . D 4 HOH A 25 425 130 HOH HOH . D 4 HOH A 26 426 46 HOH HOH . D 4 HOH A 27 427 119 HOH HOH . D 4 HOH A 28 428 106 HOH HOH . D 4 HOH A 29 429 101 HOH HOH . D 4 HOH A 30 430 21 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 105 HOH HOH . D 4 HOH A 33 433 154 HOH HOH . D 4 HOH A 34 434 25 HOH HOH . D 4 HOH A 35 435 140 HOH HOH . D 4 HOH A 36 436 94 HOH HOH . D 4 HOH A 37 437 149 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 99 HOH HOH . D 4 HOH A 40 440 44 HOH HOH . D 4 HOH A 41 441 71 HOH HOH . D 4 HOH A 42 442 166 HOH HOH . D 4 HOH A 43 443 164 HOH HOH . D 4 HOH A 44 444 79 HOH HOH . D 4 HOH A 45 445 167 HOH HOH . D 4 HOH A 46 446 83 HOH HOH . D 4 HOH A 47 447 86 HOH HOH . D 4 HOH A 48 448 1 HOH HOH . D 4 HOH A 49 449 3 HOH HOH . D 4 HOH A 50 450 4 HOH HOH . D 4 HOH A 51 451 5 HOH HOH . D 4 HOH A 52 452 6 HOH HOH . D 4 HOH A 53 453 7 HOH HOH . D 4 HOH A 54 454 9 HOH HOH . D 4 HOH A 55 455 10 HOH HOH . D 4 HOH A 56 456 11 HOH HOH . D 4 HOH A 57 457 12 HOH HOH . D 4 HOH A 58 458 13 HOH HOH . D 4 HOH A 59 459 14 HOH HOH . D 4 HOH A 60 460 15 HOH HOH . D 4 HOH A 61 461 16 HOH HOH . D 4 HOH A 62 462 17 HOH HOH . D 4 HOH A 63 463 18 HOH HOH . D 4 HOH A 64 464 22 HOH HOH . D 4 HOH A 65 465 23 HOH HOH . D 4 HOH A 66 466 26 HOH HOH . D 4 HOH A 67 467 28 HOH HOH . D 4 HOH A 68 468 29 HOH HOH . D 4 HOH A 69 469 32 HOH HOH . D 4 HOH A 70 470 33 HOH HOH . D 4 HOH A 71 471 37 HOH HOH . D 4 HOH A 72 472 39 HOH HOH . D 4 HOH A 73 473 40 HOH HOH . D 4 HOH A 74 474 41 HOH HOH . D 4 HOH A 75 475 42 HOH HOH . D 4 HOH A 76 476 45 HOH HOH . D 4 HOH A 77 477 47 HOH HOH . D 4 HOH A 78 478 48 HOH HOH . D 4 HOH A 79 479 49 HOH HOH . D 4 HOH A 80 480 50 HOH HOH . D 4 HOH A 81 481 51 HOH HOH . D 4 HOH A 82 482 52 HOH HOH . D 4 HOH A 83 483 53 HOH HOH . D 4 HOH A 84 484 54 HOH HOH . D 4 HOH A 85 485 58 HOH HOH . D 4 HOH A 86 486 59 HOH HOH . D 4 HOH A 87 487 60 HOH HOH . D 4 HOH A 88 488 61 HOH HOH . D 4 HOH A 89 489 62 HOH HOH . D 4 HOH A 90 490 63 HOH HOH . D 4 HOH A 91 491 64 HOH HOH . D 4 HOH A 92 492 65 HOH HOH . D 4 HOH A 93 493 66 HOH HOH . D 4 HOH A 94 494 67 HOH HOH . D 4 HOH A 95 495 68 HOH HOH . D 4 HOH A 96 496 72 HOH HOH . D 4 HOH A 97 497 73 HOH HOH . D 4 HOH A 98 498 74 HOH HOH . D 4 HOH A 99 499 76 HOH HOH . D 4 HOH A 100 500 77 HOH HOH . D 4 HOH A 101 501 78 HOH HOH . D 4 HOH A 102 502 80 HOH HOH . D 4 HOH A 103 503 82 HOH HOH . D 4 HOH A 104 504 84 HOH HOH . D 4 HOH A 105 505 85 HOH HOH . D 4 HOH A 106 506 87 HOH HOH . D 4 HOH A 107 507 88 HOH HOH . D 4 HOH A 108 508 90 HOH HOH . D 4 HOH A 109 509 91 HOH HOH . D 4 HOH A 110 510 92 HOH HOH . D 4 HOH A 111 511 93 HOH HOH . D 4 HOH A 112 512 95 HOH HOH . D 4 HOH A 113 513 96 HOH HOH . D 4 HOH A 114 514 97 HOH HOH . D 4 HOH A 115 515 98 HOH HOH . D 4 HOH A 116 516 100 HOH HOH . D 4 HOH A 117 517 103 HOH HOH . D 4 HOH A 118 518 104 HOH HOH . D 4 HOH A 119 519 107 HOH HOH . D 4 HOH A 120 520 108 HOH HOH . D 4 HOH A 121 521 109 HOH HOH . D 4 HOH A 122 522 110 HOH HOH . D 4 HOH A 123 523 111 HOH HOH . D 4 HOH A 124 524 112 HOH HOH . D 4 HOH A 125 525 113 HOH HOH . D 4 HOH A 126 526 114 HOH HOH . D 4 HOH A 127 527 115 HOH HOH . D 4 HOH A 128 528 116 HOH HOH . D 4 HOH A 129 529 117 HOH HOH . D 4 HOH A 130 530 118 HOH HOH . D 4 HOH A 131 531 122 HOH HOH . D 4 HOH A 132 532 124 HOH HOH . D 4 HOH A 133 533 126 HOH HOH . D 4 HOH A 134 534 127 HOH HOH . D 4 HOH A 135 535 134 HOH HOH . D 4 HOH A 136 536 135 HOH HOH . D 4 HOH A 137 537 136 HOH HOH . D 4 HOH A 138 538 137 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 141 HOH HOH . D 4 HOH A 141 541 142 HOH HOH . D 4 HOH A 142 542 143 HOH HOH . D 4 HOH A 143 543 144 HOH HOH . D 4 HOH A 144 544 145 HOH HOH . D 4 HOH A 145 545 146 HOH HOH . D 4 HOH A 146 546 147 HOH HOH . D 4 HOH A 147 547 148 HOH HOH . D 4 HOH A 148 548 150 HOH HOH . D 4 HOH A 149 549 151 HOH HOH . D 4 HOH A 150 550 152 HOH HOH . D 4 HOH A 151 551 153 HOH HOH . D 4 HOH A 152 552 157 HOH HOH . D 4 HOH A 153 553 158 HOH HOH . D 4 HOH A 154 554 165 HOH HOH . D 4 HOH A 155 555 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 10.839 -15.21 -26.779 1 52.03 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 9.828 -16.005 -27.375 1 50.87 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 10.693 -13.765 -27.194 1 52.53 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 11.528 -12.965 -26.362 1 53.39 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 11.071 -13.567 -28.645 1 51.71 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 10.389 -12.461 -29.23 1 50.59 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1218 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #