data_4XIV
#
_model_server_result.job_id            pfGVmq_YUcEGZRzRVy4KpQ 
_model_server_result.datetime_utc      '2024-10-11 02:19:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xiv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    4XIV 
#
_exptl.entry_id    4XIV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XIV 
_cell.length_a            66.412 
_cell.length_b            131.405 
_cell.length_c            147.041 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XIV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 52 n n 
PB O2B ADP sing 53 n n 
PB O3B ADP sing 54 n n 
PB O3A ADP sing 55 n n 
O2B HOB2 ADP sing 56 n n 
O3B HOB3 ADP sing 57 n n 
PA O1A ADP doub 58 n n 
PA O2A ADP sing 59 n n 
PA O3A ADP sing 60 n n 
PA O5' ADP sing 61 n n 
O2A HOA2 ADP sing 62 n n 
O5' C5' ADP sing 63 n n 
C5' C4' ADP sing 64 n n 
C5' "H5'1" ADP sing 65 n n 
C5' "H5'2" ADP sing 66 n n 
C4' O4' ADP sing 67 n n 
C4' C3' ADP sing 68 n n 
C4' H4' ADP sing 69 n n 
O4' C1' ADP sing 70 n n 
C3' O3' ADP sing 71 n n 
C3' C2' ADP sing 72 n n 
C3' H3' ADP sing 73 n n 
O3' HO3' ADP sing 74 n n 
C2' O2' ADP sing 75 n n 
C2' C1' ADP sing 76 n n 
C2' H2' ADP sing 77 n n 
O2' HO2' ADP sing 78 n n 
C1' N9 ADP sing 79 n n 
C1' H1' ADP sing 80 n n 
N9 C8 ADP sing 81 n y 
N9 C4 ADP sing 82 n y 
C8 N7 ADP doub 83 n y 
C8 H8 ADP sing 84 n n 
N7 C5 ADP sing 85 n y 
C5 C6 ADP sing 86 n y 
C5 C4 ADP doub 87 n y 
C6 N6 ADP sing 88 n n 
C6 N1 ADP doub 89 n y 
N6 HN61 ADP sing 90 n n 
N6 HN62 ADP sing 91 n n 
N1 C2 ADP sing 92 n y 
C2 N3 ADP doub 93 n y 
C2 H2 ADP sing 94 n n 
N3 C4 ADP sing 95 n y 
#
_atom_sites.entry_id                     4XIV 
_atom_sites.fract_transf_matrix[1][1]    0.015058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00761 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACP A 1 601 998 ACP ACP . 
D 3 ADP B 1 601 998 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 3 -13.92 73.326 49.964 1 177.77 ? PB ADP 601 B 1 
HETATM 2 O O1B ADP . . . D 3 -13.886 73.959 48.592 1 149.77 ? O1B ADP 601 B 1 
HETATM 3 O O2B ADP . . . D 3 -13.862 74.317 51.102 1 164.47 ? O2B ADP 601 B 1 
HETATM 4 O O3B ADP . . . D 3 -14.969 72.249 50.121 1 158.43 ? O3B ADP 601 B 1 
HETATM 5 P PA ADP . . . D 3 -11.119 73.141 49.547 1 150.79 ? PA ADP 601 B 1 
HETATM 6 O O1A ADP . . . D 3 -11.012 72.887 48.062 1 142.35 ? O1A ADP 601 B 1 
HETATM 7 O O2A ADP . . . D 3 -10.024 72.662 50.471 1 125.09 ? O2A ADP 601 B 1 
HETATM 8 O O3A ADP . . . D 3 -12.526 72.517 50.038 1 157.91 ? O3A ADP 601 B 1 
HETATM 9 O O5' ADP . . . D 3 -11.248 74.734 49.769 1 148.54 ? O5' ADP 601 B 1 
HETATM 10 C C5' ADP . . . D 3 -10.744 75.309 50.974 1 140.07 ? C5' ADP 601 B 1 
HETATM 11 C C4' ADP . . . D 3 -10.977 76.816 51.042 1 136.06 ? C4' ADP 601 B 1 
HETATM 12 O O4' ADP . . . D 3 -10.041 77.533 50.231 1 127.39 ? O4' ADP 601 B 1 
HETATM 13 C C3' ADP . . . D 3 -12.365 77.211 50.566 1 139.5 ? C3' ADP 601 B 1 
HETATM 14 O O3' ADP . . . D 3 -13.246 77.397 51.68 1 136.25 ? O3' ADP 601 B 1 
HETATM 15 C C2' ADP . . . D 3 -12.169 78.51 49.808 1 133.08 ? C2' ADP 601 B 1 
HETATM 16 O O2' ADP . . . D 3 -12.688 79.599 50.577 1 126.03 ? O2' ADP 601 B 1 
HETATM 17 C C1' ADP . . . D 3 -10.666 78.673 49.629 1 129.84 ? C1' ADP 601 B 1 
HETATM 18 N N9 ADP . . . D 3 -10.327 78.717 48.181 1 126.6 ? N9 ADP 601 B 1 
HETATM 19 C C8 ADP . . . D 3 -9.882 77.672 47.458 1 123.83 ? C8 ADP 601 B 1 
HETATM 20 N N7 ADP . . . D 3 -9.657 78.023 46.166 1 116.13 ? N7 ADP 601 B 1 
HETATM 21 C C5 ADP . . . D 3 -9.961 79.328 46.044 1 115.86 ? C5 ADP 601 B 1 
HETATM 22 C C6 ADP . . . D 3 -9.95 80.327 44.947 1 107.46 ? C6 ADP 601 B 1 
HETATM 23 N N6 ADP . . . D 3 -9.559 79.992 43.693 1 102.39 ? N6 ADP 601 B 1 
HETATM 24 N N1 ADP . . . D 3 -10.342 81.586 45.242 1 110.84 ? N1 ADP 601 B 1 
HETATM 25 C C2 ADP . . . D 3 -10.734 81.932 46.483 1 111.76 ? C2 ADP 601 B 1 
HETATM 26 N N3 ADP . . . D 3 -10.769 81.079 47.524 1 112.18 ? N3 ADP 601 B 1 
HETATM 27 C C4 ADP . . . D 3 -10.401 79.783 47.375 1 120.8 ? C4 ADP 601 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#