data_4XIY # _model_server_result.job_id 24bd49nu8TiYYISitSas8g _model_server_result.datetime_utc '2024-11-09 02:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 4XIY # _exptl.entry_id 4XIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XIY _cell.length_a 185.05 _cell.length_b 185.05 _cell.length_c 185.05 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? D ? ? ? ? ? ? ? 2.106 ? disulf ? disulf3 B SG CYS 9 B CYS 9 1_555 B SG CYS 169 B CYS 169 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 9 B CYS 9 1_555 B SG CYS 169 B CYS 169 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 9 C CYS 9 1_555 C SG CYS 169 C CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf6 D SG CYS 9 D CYS 9 1_555 D SG CYS 169 D CYS 169 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.088 ? disulf ? disulf7 D SG CYS 9 D CYS 9 1_555 D SG CYS 169 D CYS 169 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.111 ? metalc ? metalc1 A OD2 ASP 190 A ASP 190 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 A OD1 ASP 190 A ASP 190 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A OE2 GLU 194 A GLU 194 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 A OE1 GLU 226 A GLU 226 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 A OE1 GLU 230 A GLU 230 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 E MG MG . A MG 401 1_555 B OD1 ASP 190 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc7 E MG MG . A MG 401 1_555 R O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 E MG MG . A MG 401 1_555 R O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 B OD2 ASP 190 B ASP 190 1_555 I FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 B OE2 GLU 194 B GLU 194 1_555 I FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc11 B OE2 GLU 226 B GLU 226 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc12 B OE1 GLU 230 B GLU 230 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc13 I FE FE . B FE 402 1_555 R O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc14 I FE FE . B FE 402 1_555 R O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc15 C OD2 ASP 190 C ASP 190 1_555 K FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc16 C OD1 ASP 190 C ASP 190 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc17 C OE2 GLU 194 C GLU 194 1_555 K FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc18 C OE1 GLU 226 C GLU 226 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc19 C OE2 GLU 226 C GLU 226 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc20 C OE2 GLU 230 C GLU 230 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc21 L MG MG . C MG 402 1_555 S O HOH . C HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc22 L MG MG . C MG 402 1_555 D OD1 ASP 190 D ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc23 L MG MG . C MG 402 1_555 T O HOH . D HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc24 S O HOH . C HOH 505 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc25 D OD2 ASP 190 D ASP 190 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc26 D OE2 GLU 194 D GLU 194 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc27 D OE2 GLU 226 D GLU 226 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc28 D OE1 GLU 230 D GLU 230 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc29 O FE FE . D FE 402 1_555 T O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc30 O FE FE . D FE 402 1_555 T O HOH . D HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XIY _atom_sites.fract_transf_matrix[1][1] 0.005404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 401 1 MG MG . F 3 FE A 1 402 1 FE FE . G 4 PGE A 1 403 2 PGE PGE . H 2 MG B 1 401 1 MG MG . I 3 FE B 1 402 1 FE FE . J 4 PGE B 1 403 1 PGE PGE . K 3 FE C 1 401 3 FE FE . L 2 MG C 1 402 1 MG MG . M 5 PEG C 1 403 1 PEG PEG . N 2 MG D 1 401 1 MG MG . O 3 FE D 1 402 2 FE FE . P 6 PG4 D 1 403 1 PG4 PG4 . Q 7 HOH A 1 501 21 HOH HOH . Q 7 HOH A 2 502 6 HOH HOH . Q 7 HOH A 3 503 7 HOH HOH . Q 7 HOH A 4 504 8 HOH HOH . Q 7 HOH A 5 505 10 HOH HOH . Q 7 HOH A 6 506 14 HOH HOH . Q 7 HOH A 7 507 6 HOH HOH . Q 7 HOH A 8 508 11 HOH HOH . Q 7 HOH A 9 509 15 HOH HOH . R 7 HOH B 1 501 5 HOH HOH . R 7 HOH B 2 502 12 HOH HOH . R 7 HOH B 3 503 16 HOH HOH . R 7 HOH B 4 504 17 HOH HOH . R 7 HOH B 5 505 18 HOH HOH . R 7 HOH B 6 506 23 HOH HOH . R 7 HOH B 7 507 24 HOH HOH . R 7 HOH B 8 508 25 HOH HOH . R 7 HOH B 9 509 5 HOH HOH . R 7 HOH B 10 510 7 HOH HOH . R 7 HOH B 11 511 8 HOH HOH . R 7 HOH B 12 512 9 HOH HOH . S 7 HOH C 1 501 3 HOH HOH . S 7 HOH C 2 502 13 HOH HOH . S 7 HOH C 3 503 15 HOH HOH . S 7 HOH C 4 504 22 HOH HOH . S 7 HOH C 5 505 2 HOH HOH . S 7 HOH C 6 506 3 HOH HOH . S 7 HOH C 7 507 10 HOH HOH . T 7 HOH D 1 501 20 HOH HOH . T 7 HOH D 2 502 1 HOH HOH . T 7 HOH D 3 503 2 HOH HOH . T 7 HOH D 4 504 4 HOH HOH . T 7 HOH D 5 505 9 HOH HOH . T 7 HOH D 6 506 11 HOH HOH . T 7 HOH D 7 507 19 HOH HOH . T 7 HOH D 8 508 1 HOH HOH . T 7 HOH D 9 509 4 HOH HOH . T 7 HOH D 10 510 12 HOH HOH . T 7 HOH D 11 511 13 HOH HOH . T 7 HOH D 12 512 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 2 _atom_site.Cartn_x 47.655 _atom_site.Cartn_y 33.463 _atom_site.Cartn_z 73.366 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #