data_4XIY
#
_model_server_result.job_id            zFvxeN8lHB4dygxSbDyqAg 
_model_server_result.datetime_utc      '2024-11-24 18:02:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xiy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":403}' 
#
_entry.id    4XIY 
#
_exptl.entry_id    4XIY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XIY 
_cell.length_a            185.05 
_cell.length_b            185.05 
_cell.length_c            185.05 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? D ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf3 B SG CYS 9 B CYS 9 1_555 B SG CYS 169 B CYS 169 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 B SG CYS 9 B CYS 9 1_555 B SG CYS 169 B CYS 169 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf5 C SG CYS 9 C CYS 9 1_555 C SG CYS 169 C CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf6 D SG CYS 9 D CYS 9 1_555 D SG CYS 169 D CYS 169 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf7 D SG CYS 9 D CYS 9 1_555 D SG CYS 169 D CYS 169 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc1 A OD2 ASP 190 A ASP 190 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc2 A OD1 ASP 190 A ASP 190 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc3 A OE2 GLU 194 A GLU 194 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc4 A OE1 GLU 226 A GLU 226 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 A OE1 GLU 230 A GLU 230 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc6 E MG MG . A MG 401 1_555 B OD1 ASP 190 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc7 E MG MG . A MG 401 1_555 R O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc8 E MG MG . A MG 401 1_555 R O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc9 B OD2 ASP 190 B ASP 190 1_555 I FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc10 B OE2 GLU 194 B GLU 194 1_555 I FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc11 B OE2 GLU 226 B GLU 226 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc12 B OE1 GLU 230 B GLU 230 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc13 I FE FE . B FE 402 1_555 R O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc14 I FE FE . B FE 402 1_555 R O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc15 C OD2 ASP 190 C ASP 190 1_555 K FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc16 C OD1 ASP 190 C ASP 190 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc17 C OE2 GLU 194 C GLU 194 1_555 K FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc18 C OE1 GLU 226 C GLU 226 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc19 C OE2 GLU 226 C GLU 226 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc20 C OE2 GLU 230 C GLU 230 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc21 L MG MG . C MG 402 1_555 S O HOH . C HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc22 L MG MG . C MG 402 1_555 D OD1 ASP 190 D ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc23 L MG MG . C MG 402 1_555 T O HOH . D HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc24 S O HOH . C HOH 505 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc25 D OD2 ASP 190 D ASP 190 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc26 D OE2 GLU 194 D GLU 194 1_555 O FE FE . D FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc27 D OE2 GLU 226 D GLU 226 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc28 D OE1 GLU 230 D GLU 230 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc29 O FE FE . D FE 402 1_555 T O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc30 O FE FE . D FE 402 1_555 T O HOH . D HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 253 n n 
O1 HO1 PG4 sing 254 n n 
C1 C2 PG4 sing 255 n n 
C1 H11 PG4 sing 256 n n 
C1 H12 PG4 sing 257 n n 
C2 O2 PG4 sing 258 n n 
C2 H21 PG4 sing 259 n n 
C2 H22 PG4 sing 260 n n 
O2 C3 PG4 sing 261 n n 
C3 C4 PG4 sing 262 n n 
C3 H31 PG4 sing 263 n n 
C3 H32 PG4 sing 264 n n 
C4 O3 PG4 sing 265 n n 
C4 H41 PG4 sing 266 n n 
C4 H42 PG4 sing 267 n n 
O3 C5 PG4 sing 268 n n 
C5 C6 PG4 sing 269 n n 
C5 H51 PG4 sing 270 n n 
C5 H52 PG4 sing 271 n n 
C6 O4 PG4 sing 272 n n 
C6 H61 PG4 sing 273 n n 
C6 H62 PG4 sing 274 n n 
O4 C7 PG4 sing 275 n n 
C7 C8 PG4 sing 276 n n 
C7 H71 PG4 sing 277 n n 
C7 H72 PG4 sing 278 n n 
C8 O5 PG4 sing 279 n n 
C8 H81 PG4 sing 280 n n 
C8 H82 PG4 sing 281 n n 
O5 HO5 PG4 sing 282 n n 
#
_atom_sites.entry_id                     4XIY 
_atom_sites.fract_transf_matrix[1][1]    0.005404 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 401 1 MG MG . 
F 3 FE A 1 402 1 FE FE . 
G 4 PGE A 1 403 2 PGE PGE . 
H 2 MG B 1 401 1 MG MG . 
I 3 FE B 1 402 1 FE FE . 
J 4 PGE B 1 403 1 PGE PGE . 
K 3 FE C 1 401 3 FE FE . 
L 2 MG C 1 402 1 MG MG . 
M 5 PEG C 1 403 1 PEG PEG . 
N 2 MG D 1 401 1 MG MG . 
O 3 FE D 1 402 2 FE FE . 
P 6 PG4 D 1 403 1 PG4 PG4 . 
Q 7 HOH A 1 501 21 HOH HOH . 
Q 7 HOH A 2 502 6 HOH HOH . 
Q 7 HOH A 3 503 7 HOH HOH . 
Q 7 HOH A 4 504 8 HOH HOH . 
Q 7 HOH A 5 505 10 HOH HOH . 
Q 7 HOH A 6 506 14 HOH HOH . 
Q 7 HOH A 7 507 6 HOH HOH . 
Q 7 HOH A 8 508 11 HOH HOH . 
Q 7 HOH A 9 509 15 HOH HOH . 
R 7 HOH B 1 501 5 HOH HOH . 
R 7 HOH B 2 502 12 HOH HOH . 
R 7 HOH B 3 503 16 HOH HOH . 
R 7 HOH B 4 504 17 HOH HOH . 
R 7 HOH B 5 505 18 HOH HOH . 
R 7 HOH B 6 506 23 HOH HOH . 
R 7 HOH B 7 507 24 HOH HOH . 
R 7 HOH B 8 508 25 HOH HOH . 
R 7 HOH B 9 509 5 HOH HOH . 
R 7 HOH B 10 510 7 HOH HOH . 
R 7 HOH B 11 511 8 HOH HOH . 
R 7 HOH B 12 512 9 HOH HOH . 
S 7 HOH C 1 501 3 HOH HOH . 
S 7 HOH C 2 502 13 HOH HOH . 
S 7 HOH C 3 503 15 HOH HOH . 
S 7 HOH C 4 504 22 HOH HOH . 
S 7 HOH C 5 505 2 HOH HOH . 
S 7 HOH C 6 506 3 HOH HOH . 
S 7 HOH C 7 507 10 HOH HOH . 
T 7 HOH D 1 501 20 HOH HOH . 
T 7 HOH D 2 502 1 HOH HOH . 
T 7 HOH D 3 503 2 HOH HOH . 
T 7 HOH D 4 504 4 HOH HOH . 
T 7 HOH D 5 505 9 HOH HOH . 
T 7 HOH D 6 506 11 HOH HOH . 
T 7 HOH D 7 507 19 HOH HOH . 
T 7 HOH D 8 508 1 HOH HOH . 
T 7 HOH D 9 509 4 HOH HOH . 
T 7 HOH D 10 510 12 HOH HOH . 
T 7 HOH D 11 511 13 HOH HOH . 
T 7 HOH D 12 512 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . P 6 74.656 28.433 56.53 1 48.53 ? O1 PG4 403 D 1 
HETATM 2 C C1 PG4 . . . P 6 73.688 29.452 56.183 1 51.43 ? C1 PG4 403 D 1 
HETATM 3 C C2 PG4 . . . P 6 74.117 30.418 55.075 1 49.26 ? C2 PG4 403 D 1 
HETATM 4 O O2 PG4 . . . P 6 73.363 30.121 53.889 1 50.4 ? O2 PG4 403 D 1 
HETATM 5 C C3 PG4 . . . P 6 73.692 30.849 52.692 1 42.51 ? C3 PG4 403 D 1 
HETATM 6 C C4 PG4 . . . P 6 74.229 29.946 51.581 1 40.72 ? C4 PG4 403 D 1 
HETATM 7 O O3 PG4 . . . P 6 73.389 28.827 51.338 1 42.05 ? O3 PG4 403 D 1 
HETATM 8 C C5 PG4 . . . P 6 73.338 28.383 49.987 1 41.9 ? C5 PG4 403 D 1 
HETATM 9 C C6 PG4 . . . P 6 72.44 27.15 49.827 1 43.01 ? C6 PG4 403 D 1 
HETATM 10 O O4 PG4 . . . P 6 72.827 26.049 50.657 1 48.52 ? O4 PG4 403 D 1 
HETATM 11 C C7 PG4 . . . P 6 73.135 24.819 49.99 1 45.9 ? C7 PG4 403 D 1 
HETATM 12 C C8 PG4 . . . P 6 73.746 23.846 51.002 1 49.96 ? C8 PG4 403 D 1 
HETATM 13 O O5 PG4 . . . P 6 74.926 23.204 50.453 1 49.46 ? O5 PG4 403 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#