data_4XJ0 # _model_server_result.job_id U4lwOJSO_LhzUp9Gd0bUaQ _model_server_result.datetime_utc '2024-12-22 02:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4XJ0 # _exptl.entry_id 4XJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.886 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(1S)-1-(4-chloro-3-fluorophenyl)-2-hydroxyethyl]-4-[2-(tetrahydro-2H-pyran-4-ylamino)pyrimidin-4-yl]pyridin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XJ0 _cell.length_a 83.191 _cell.length_b 83.191 _cell.length_c 274.493 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 113 A ASP 124 1_555 A N NEP 114 A NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale2 A C NEP 114 A NEP 125 1_555 A N ILE 115 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale3 B C ASP 113 B ASP 124 1_555 B N NEP 114 B NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale4 B C NEP 114 B NEP 125 1_555 B N ILE 115 B ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C22 H22 Cl F N4 O3' _chem_comp.formula_weight 444.886 _chem_comp.id 41B _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(1S)-1-(4-chloro-3-fluorophenyl)-2-hydroxyethyl]-4-[2-(tetrahydro-2H-pyran-4-ylamino)pyrimidin-4-yl]pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 41B sing 1 n n C26 C25 41B sing 2 n n O28 C27 41B sing 3 n n O28 C29 41B sing 4 n n N24 C25 41B sing 5 n n N24 C22 41B sing 6 n n C30 C25 41B sing 7 n n C30 C29 41B sing 8 n n N21 C22 41B doub 9 n y N21 C20 41B sing 10 n y C22 N23 41B sing 11 n y C20 C19 41B doub 12 n y N23 C18 41B doub 13 n y C19 C18 41B sing 14 n y C18 C14 41B sing 15 n n C14 C13 41B sing 16 n n C14 C15 41B doub 17 n n C13 C12 41B doub 18 n n C15 C16 41B sing 19 n n C12 N11 41B sing 20 n n C16 N11 41B sing 21 n n C16 O17 41B doub 22 n n N11 C7 41B sing 23 n n C9 C7 41B sing 24 n n C9 O10 41B sing 25 n n C7 C6 41B sing 26 n n C1 C6 41B doub 27 n y C1 C2 41B sing 28 n y C6 C5 41B sing 29 n y C2 C3 41B doub 30 n y C5 C4 41B doub 31 n y C3 C4 41B sing 32 n y C3 CL1 41B sing 33 n n C4 F31 41B sing 34 n n C5 H1 41B sing 35 n n C7 H2 41B sing 36 n n C13 H3 41B sing 37 n n C15 H4 41B sing 38 n n C20 H5 41B sing 39 n n C26 H6 41B sing 40 n n C26 H7 41B sing 41 n n C1 H8 41B sing 42 n n C2 H9 41B sing 43 n n C9 H10 41B sing 44 n n C9 H11 41B sing 45 n n O10 H12 41B sing 46 n n C12 H13 41B sing 47 n n C19 H14 41B sing 48 n n N24 H15 41B sing 49 n n C25 H16 41B sing 50 n n C27 H17 41B sing 51 n n C27 H18 41B sing 52 n n C29 H19 41B sing 53 n n C29 H20 41B sing 54 n n C30 H21 41B sing 55 n n C30 H22 41B sing 56 n n # _atom_sites.entry_id 4XJ0 _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 41B A 1 401 1 41B 41B . D 2 41B B 1 401 1 41B LIG . E 3 HOH A 1 501 8 HOH HOH . E 3 HOH A 2 502 66 HOH HOH . E 3 HOH A 3 503 6 HOH HOH . E 3 HOH A 4 504 21 HOH HOH . E 3 HOH A 5 505 13 HOH HOH . E 3 HOH A 6 506 53 HOH HOH . E 3 HOH A 7 507 17 HOH HOH . E 3 HOH A 8 508 142 HOH HOH . E 3 HOH A 9 509 150 HOH HOH . E 3 HOH A 10 510 31 HOH HOH . E 3 HOH A 11 511 99 HOH HOH . E 3 HOH A 12 512 144 HOH HOH . E 3 HOH A 13 513 67 HOH HOH . E 3 HOH A 14 514 2 HOH HOH . E 3 HOH A 15 515 11 HOH HOH . E 3 HOH A 16 516 98 HOH HOH . E 3 HOH A 17 517 3 HOH HOH . E 3 HOH A 18 518 109 HOH HOH . E 3 HOH A 19 519 22 HOH HOH . E 3 HOH A 20 520 70 HOH HOH . E 3 HOH A 21 521 36 HOH HOH . E 3 HOH A 22 522 26 HOH HOH . E 3 HOH A 23 523 16 HOH HOH . E 3 HOH A 24 524 78 HOH HOH . E 3 HOH A 25 525 65 HOH HOH . E 3 HOH A 26 526 25 HOH HOH . E 3 HOH A 27 527 127 HOH HOH . E 3 HOH A 28 528 24 HOH HOH . E 3 HOH A 29 529 46 HOH HOH . E 3 HOH A 30 530 139 HOH HOH . E 3 HOH A 31 531 52 HOH HOH . E 3 HOH A 32 532 163 HOH HOH . E 3 HOH A 33 533 87 HOH HOH . E 3 HOH A 34 534 33 HOH HOH . E 3 HOH A 35 535 9 HOH HOH . E 3 HOH A 36 536 68 HOH HOH . E 3 HOH A 37 537 63 HOH HOH . E 3 HOH A 38 538 118 HOH HOH . E 3 HOH A 39 539 47 HOH HOH . E 3 HOH A 40 540 48 HOH HOH . E 3 HOH A 41 541 34 HOH HOH . E 3 HOH A 42 542 39 HOH HOH . E 3 HOH A 43 543 80 HOH HOH . E 3 HOH A 44 544 56 HOH HOH . E 3 HOH A 45 545 81 HOH HOH . E 3 HOH A 46 546 122 HOH HOH . E 3 HOH A 47 547 12 HOH HOH . E 3 HOH A 48 548 37 HOH HOH . E 3 HOH A 49 549 115 HOH HOH . E 3 HOH A 50 550 45 HOH HOH . E 3 HOH A 51 551 10 HOH HOH . E 3 HOH A 52 552 102 HOH HOH . E 3 HOH A 53 553 54 HOH HOH . E 3 HOH A 54 554 15 HOH HOH . E 3 HOH A 55 555 20 HOH HOH . E 3 HOH A 56 556 148 HOH HOH . E 3 HOH A 57 557 123 HOH HOH . E 3 HOH A 58 558 134 HOH HOH . E 3 HOH A 59 559 51 HOH HOH . E 3 HOH A 60 560 103 HOH HOH . E 3 HOH A 61 561 64 HOH HOH . E 3 HOH A 62 562 164 HOH HOH . E 3 HOH A 63 563 59 HOH HOH . E 3 HOH A 64 564 141 HOH HOH . E 3 HOH A 65 565 92 HOH HOH . E 3 HOH A 66 566 162 HOH HOH . E 3 HOH A 67 567 50 HOH HOH . E 3 HOH A 68 568 108 HOH HOH . E 3 HOH A 69 569 161 HOH HOH . E 3 HOH A 70 570 157 HOH HOH . E 3 HOH A 71 571 79 HOH HOH . E 3 HOH A 72 572 160 HOH HOH . E 3 HOH A 73 573 135 HOH HOH . E 3 HOH A 74 574 95 HOH HOH . E 3 HOH A 75 575 82 HOH HOH . E 3 HOH A 76 576 111 HOH HOH . E 3 HOH A 77 577 75 HOH HOH . E 3 HOH A 78 578 49 HOH HOH . F 3 HOH B 1 501 105 HOH HOH . F 3 HOH B 2 502 35 HOH HOH . F 3 HOH B 3 503 90 HOH HOH . F 3 HOH B 4 504 43 HOH HOH . F 3 HOH B 5 505 7 HOH HOH . F 3 HOH B 6 506 5 HOH HOH . F 3 HOH B 7 507 110 HOH HOH . F 3 HOH B 8 508 146 HOH HOH . F 3 HOH B 9 509 76 HOH HOH . F 3 HOH B 10 510 4 HOH HOH . F 3 HOH B 11 511 94 HOH HOH . F 3 HOH B 12 512 107 HOH HOH . F 3 HOH B 13 513 143 HOH HOH . F 3 HOH B 14 514 131 HOH HOH . F 3 HOH B 15 515 38 HOH HOH . F 3 HOH B 16 516 18 HOH HOH . F 3 HOH B 17 517 167 HOH HOH . F 3 HOH B 18 518 104 HOH HOH . F 3 HOH B 19 519 30 HOH HOH . F 3 HOH B 20 520 91 HOH HOH . F 3 HOH B 21 521 113 HOH HOH . F 3 HOH B 22 522 29 HOH HOH . F 3 HOH B 23 523 55 HOH HOH . F 3 HOH B 24 524 136 HOH HOH . F 3 HOH B 25 525 114 HOH HOH . F 3 HOH B 26 526 19 HOH HOH . F 3 HOH B 27 527 40 HOH HOH . F 3 HOH B 28 528 96 HOH HOH . F 3 HOH B 29 529 14 HOH HOH . F 3 HOH B 30 530 32 HOH HOH . F 3 HOH B 31 531 1 HOH HOH . F 3 HOH B 32 532 88 HOH HOH . F 3 HOH B 33 533 165 HOH HOH . F 3 HOH B 34 534 140 HOH HOH . F 3 HOH B 35 535 159 HOH HOH . F 3 HOH B 36 536 133 HOH HOH . F 3 HOH B 37 537 132 HOH HOH . F 3 HOH B 38 538 145 HOH HOH . F 3 HOH B 39 539 116 HOH HOH . F 3 HOH B 40 540 138 HOH HOH . F 3 HOH B 41 541 77 HOH HOH . F 3 HOH B 42 542 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 41B . . . D 2 3.904 -52.356 -53.976 1 93.84 ? C4 41B 401 B 1 HETATM 2 C C5 41B . . . D 2 2.849 -52.375 -54.878 1 90.72 ? C5 41B 401 B 1 HETATM 3 C C6 41B . . . D 2 2.61 -51.26 -55.673 1 88.98 ? C6 41B 401 B 1 HETATM 4 C C7 41B . . . D 2 1.511 -51.368 -56.707 1 84.64 ? C7 41B 401 B 1 HETATM 5 C C13 41B . . . D 2 3.673 -52.127 -59.642 1 77.24 ? C13 41B 401 B 1 HETATM 6 C C15 41B . . . D 2 2.212 -54.031 -59.306 1 74.45 ? C15 41B 401 B 1 HETATM 7 C C20 41B . . . D 2 3.981 -55.723 -62.928 1 64.52 ? C20 41B 401 B 1 HETATM 8 C C22 41B . . . D 2 5.298 -53.813 -63.084 1 63.05 ? C22 41B 401 B 1 HETATM 9 C C26 41B . . . D 2 8.11 -51.446 -63.913 1 60.37 ? C26 41B 401 B 1 HETATM 10 C C1 41B . . . D 2 3.467 -50.155 -55.603 1 91.88 ? C1 41B 401 B 1 HETATM 11 C C2 41B . . . D 2 4.535 -50.14 -54.712 1 93.91 ? C2 41B 401 B 1 HETATM 12 C C3 41B . . . D 2 4.738 -51.244 -53.896 1 96.39 ? C3 41B 401 B 1 HETATM 13 C C9 41B . . . D 2 0.878 -50.027 -57.121 1 84.08 ? C9 41B 401 B 1 HETATM 14 O O10 41B . . . D 2 0.272 -49.407 -55.986 1 84.67 ? O10 41B 401 B 1 HETATM 15 N N11 41B . . . D 2 2.073 -52.112 -57.861 1 81.54 ? N11 41B 401 B 1 HETATM 16 C C12 41B . . . D 2 3.091 -51.525 -58.582 1 80.72 ? C12 41B 401 B 1 HETATM 17 C C14 41B . . . D 2 3.245 -53.421 -60.032 1 72.65 ? C14 41B 401 B 1 HETATM 18 C C16 41B . . . D 2 1.629 -53.362 -58.198 1 77.31 ? C16 41B 401 B 1 HETATM 19 O O17 41B . . . D 2 0.719 -53.918 -57.588 1 76.11 ? O17 41B 401 B 1 HETATM 20 C C18 41B . . . D 2 3.879 -54.041 -61.229 1 67.01 ? C18 41B 401 B 1 HETATM 21 C C19 41B . . . D 2 3.437 -55.277 -61.732 1 65.56 ? C19 41B 401 B 1 HETATM 22 N N21 41B . . . D 2 4.911 -54.996 -63.551 1 64.5 ? N21 41B 401 B 1 HETATM 23 N N23 41B . . . D 2 4.788 -53.347 -61.937 1 63.98 ? N23 41B 401 B 1 HETATM 24 N N24 41B . . . D 2 6.262 -53.102 -63.797 1 60.94 ? N24 41B 401 B 1 HETATM 25 C C25 41B . . . D 2 6.698 -51.753 -63.385 1 60.71 ? C25 41B 401 B 1 HETATM 26 C C27 41B . . . D 2 8.522 -50.013 -63.524 1 61.03 ? C27 41B 401 B 1 HETATM 27 O O28 41B . . . D 2 7.498 -49.036 -63.828 1 60.07 ? O28 41B 401 B 1 HETATM 28 C C29 41B . . . D 2 6.18 -49.3 -63.322 1 59.43 ? C29 41B 401 B 1 HETATM 29 C C30 41B . . . D 2 5.7 -50.667 -63.841 1 60.15 ? C30 41B 401 B 1 HETATM 30 F F31 41B . . . D 2 4.154 -53.422 -53.192 1 94.51 ? F31 41B 401 B 1 HETATM 31 CL CL1 41B . . . D 2 6.061 -51.267 -52.785 1 101.77 ? CL1 41B 401 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #