data_4XJ6 # _model_server_result.job_id 671MSHJWXd5Exq95lntGvg _model_server_result.datetime_utc '2024-11-15 01:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4XJ6 # _exptl.entry_id 4XJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 4XJ6 _cell.length_a 136.07 _cell.length_b 46.3 _cell.length_c 62.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 129 A ASP 129 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A OD1 ASP 129 A ASP 129 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 A OD2 ASP 129 A ASP 129 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc4 A OD2 ASP 131 A ASP 131 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 A OD1 ASP 131 A ASP 131 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 A OD2 ASP 191 A ASP 191 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 B MG MG . A MG 501 1_555 D O2G GH3 . A GH3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 B MG MG . A MG 501 1_555 D O2B GH3 . A GH3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 B MG MG . A MG 501 1_555 D O2A GH3 . A GH3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc10 B MG MG . A MG 501 1_555 F O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc11 C MG MG . A MG 502 1_555 F O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XJ6 _atom_sites.fract_transf_matrix[1][1] 0.007349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 2 MG A 1 502 2 MG MG . D 3 GH3 A 1 503 1 GH3 GTP . E 3 GH3 A 1 504 1 GH3 GTP . F 4 HOH A 1 601 28 HOH HOH . F 4 HOH A 2 602 84 HOH HOH . F 4 HOH A 3 603 36 HOH HOH . F 4 HOH A 4 604 135 HOH HOH . F 4 HOH A 5 605 50 HOH HOH . F 4 HOH A 6 606 5 HOH HOH . F 4 HOH A 7 607 41 HOH HOH . F 4 HOH A 8 608 29 HOH HOH . F 4 HOH A 9 609 143 HOH HOH . F 4 HOH A 10 610 52 HOH HOH . F 4 HOH A 11 611 83 HOH HOH . F 4 HOH A 12 612 119 HOH HOH . F 4 HOH A 13 613 43 HOH HOH . F 4 HOH A 14 614 115 HOH HOH . F 4 HOH A 15 615 70 HOH HOH . F 4 HOH A 16 616 65 HOH HOH . F 4 HOH A 17 617 101 HOH HOH . F 4 HOH A 18 618 157 HOH HOH . F 4 HOH A 19 619 138 HOH HOH . F 4 HOH A 20 620 14 HOH HOH . F 4 HOH A 21 621 39 HOH HOH . F 4 HOH A 22 622 153 HOH HOH . F 4 HOH A 23 623 128 HOH HOH . F 4 HOH A 24 624 105 HOH HOH . F 4 HOH A 25 625 159 HOH HOH . F 4 HOH A 26 626 82 HOH HOH . F 4 HOH A 27 627 48 HOH HOH . F 4 HOH A 28 628 165 HOH HOH . F 4 HOH A 29 629 155 HOH HOH . F 4 HOH A 30 630 176 HOH HOH . F 4 HOH A 31 631 4 HOH HOH . F 4 HOH A 32 632 7 HOH HOH . F 4 HOH A 33 633 10 HOH HOH . F 4 HOH A 34 634 11 HOH HOH . F 4 HOH A 35 635 13 HOH HOH . F 4 HOH A 36 636 15 HOH HOH . F 4 HOH A 37 637 16 HOH HOH . F 4 HOH A 38 638 18 HOH HOH . F 4 HOH A 39 639 21 HOH HOH . F 4 HOH A 40 640 22 HOH HOH . F 4 HOH A 41 641 25 HOH HOH . F 4 HOH A 42 642 26 HOH HOH . F 4 HOH A 43 643 32 HOH HOH . F 4 HOH A 44 644 33 HOH HOH . F 4 HOH A 45 645 34 HOH HOH . F 4 HOH A 46 646 35 HOH HOH . F 4 HOH A 47 647 37 HOH HOH . F 4 HOH A 48 648 42 HOH HOH . F 4 HOH A 49 649 45 HOH HOH . F 4 HOH A 50 650 49 HOH HOH . F 4 HOH A 51 651 51 HOH HOH . F 4 HOH A 52 652 56 HOH HOH . F 4 HOH A 53 653 57 HOH HOH . F 4 HOH A 54 654 60 HOH HOH . F 4 HOH A 55 655 61 HOH HOH . F 4 HOH A 56 656 64 HOH HOH . F 4 HOH A 57 657 66 HOH HOH . F 4 HOH A 58 658 67 HOH HOH . F 4 HOH A 59 659 68 HOH HOH . F 4 HOH A 60 660 69 HOH HOH . F 4 HOH A 61 661 71 HOH HOH . F 4 HOH A 62 662 72 HOH HOH . F 4 HOH A 63 663 76 HOH HOH . F 4 HOH A 64 664 77 HOH HOH . F 4 HOH A 65 665 79 HOH HOH . F 4 HOH A 66 666 80 HOH HOH . F 4 HOH A 67 667 85 HOH HOH . F 4 HOH A 68 668 88 HOH HOH . F 4 HOH A 69 669 89 HOH HOH . F 4 HOH A 70 670 91 HOH HOH . F 4 HOH A 71 671 92 HOH HOH . F 4 HOH A 72 672 93 HOH HOH . F 4 HOH A 73 673 103 HOH HOH . F 4 HOH A 74 674 108 HOH HOH . F 4 HOH A 75 675 111 HOH HOH . F 4 HOH A 76 676 113 HOH HOH . F 4 HOH A 77 677 121 HOH HOH . F 4 HOH A 78 678 125 HOH HOH . F 4 HOH A 79 679 129 HOH HOH . F 4 HOH A 80 680 131 HOH HOH . F 4 HOH A 81 681 133 HOH HOH . F 4 HOH A 82 682 134 HOH HOH . F 4 HOH A 83 683 139 HOH HOH . F 4 HOH A 84 684 141 HOH HOH . F 4 HOH A 85 685 147 HOH HOH . F 4 HOH A 86 686 166 HOH HOH . F 4 HOH A 87 687 170 HOH HOH . F 4 HOH A 88 688 171 HOH HOH . F 4 HOH A 89 689 172 HOH HOH . F 4 HOH A 90 690 173 HOH HOH . F 4 HOH A 91 691 174 HOH HOH . F 4 HOH A 92 692 175 HOH HOH . F 4 HOH A 93 693 177 HOH HOH . F 4 HOH A 94 694 178 HOH HOH . F 4 HOH A 95 695 179 HOH HOH . F 4 HOH A 96 696 180 HOH HOH . F 4 HOH A 97 697 181 HOH HOH . F 4 HOH A 98 698 182 HOH HOH . F 4 HOH A 99 699 183 HOH HOH . F 4 HOH A 100 700 184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.871 _atom_site.Cartn_y -0.139 _atom_site.Cartn_z 28.797 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #