data_4XJJ # _model_server_result.job_id u8nCi3omBPZ1R7oNBsg7Sg _model_server_result.datetime_utc '2025-08-31 06:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4XJJ # _exptl.entry_id 4XJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.295 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[2-(2-hydroxyethyl)pyridinium-1-yl]propane-1-sulfonate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XJJ _cell.length_a 35.17 _cell.length_b 40.373 _cell.length_c 76.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 28 1_555 A SG CYS 37 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 7 A CYS 31 1_555 A SG CYS 24 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 14 A CYS 38 1_555 A SG CYS 20 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 30 A CYS 54 1_555 A SG CYS 54 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 74 A CYS 98 1_555 A SG CYS 89 A CYS 113 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 74 A CYS 98 1_555 A SG CYS 89 A CYS 113 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 91 A CYS 115 1_555 A SG CYS 96 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C10 H15 N O4 S' _chem_comp.formula_weight 245.295 _chem_comp.id 41D _chem_comp.mon_nstd_flag . _chem_comp.name 3-[2-(2-hydroxyethyl)pyridinium-1-yl]propane-1-sulfonate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 S13 41D doub 1 n n O14 S13 41D doub 2 n n S13 O15 41D sing 3 n n S13 C12 41D sing 4 n n C12 C11 41D sing 5 n n C11 C10 41D sing 6 n n C10 N05 41D sing 7 n n N05 C06 41D doub 8 n y N05 C04 41D sing 9 n y C06 C01 41D sing 10 n y C07 C04 41D sing 11 n n C07 C08 41D sing 12 n n C04 C03 41D doub 13 n y C01 C02 41D doub 14 n y O09 C08 41D sing 15 n n C03 C02 41D sing 16 n y C10 H1 41D sing 17 n n C10 H2 41D sing 18 n n C01 H3 41D sing 19 n n C02 H4 41D sing 20 n n C03 H6 41D sing 21 n n C06 H7 41D sing 22 n n C07 H8 41D sing 23 n n C07 H9 41D sing 24 n n C08 H10 41D sing 25 n n C08 H11 41D sing 26 n n O09 H12 41D sing 27 n n C11 H13 41D sing 28 n n C11 H14 41D sing 29 n n C12 H15 41D sing 30 n n C12 H16 41D sing 31 n n # _atom_sites.entry_id 4XJJ _atom_sites.fract_transf_matrix[1][1] 0.028433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 41D A 1 201 1 41D LIG . C 3 HOH A 1 301 71 HOH HOH . C 3 HOH A 2 302 125 HOH HOH . C 3 HOH A 3 303 19 HOH HOH . C 3 HOH A 4 304 11 HOH HOH . C 3 HOH A 5 305 128 HOH HOH . C 3 HOH A 6 306 66 HOH HOH . C 3 HOH A 7 307 45 HOH HOH . C 3 HOH A 8 308 44 HOH HOH . C 3 HOH A 9 309 86 HOH HOH . C 3 HOH A 10 310 35 HOH HOH . C 3 HOH A 11 311 60 HOH HOH . C 3 HOH A 12 312 13 HOH HOH . C 3 HOH A 13 313 51 HOH HOH . C 3 HOH A 14 314 12 HOH HOH . C 3 HOH A 15 315 68 HOH HOH . C 3 HOH A 16 316 52 HOH HOH . C 3 HOH A 17 317 112 HOH HOH . C 3 HOH A 18 318 36 HOH HOH . C 3 HOH A 19 319 10 HOH HOH . C 3 HOH A 20 320 39 HOH HOH . C 3 HOH A 21 321 43 HOH HOH . C 3 HOH A 22 322 97 HOH HOH . C 3 HOH A 23 323 26 HOH HOH . C 3 HOH A 24 324 108 HOH HOH . C 3 HOH A 25 325 14 HOH HOH . C 3 HOH A 26 326 29 HOH HOH . C 3 HOH A 27 327 59 HOH HOH . C 3 HOH A 28 328 33 HOH HOH . C 3 HOH A 29 329 70 HOH HOH . C 3 HOH A 30 330 100 HOH HOH . C 3 HOH A 31 331 73 HOH HOH . C 3 HOH A 32 332 28 HOH HOH . C 3 HOH A 33 333 41 HOH HOH . C 3 HOH A 34 334 105 HOH HOH . C 3 HOH A 35 335 84 HOH HOH . C 3 HOH A 36 336 46 HOH HOH . C 3 HOH A 37 337 24 HOH HOH . C 3 HOH A 38 338 74 HOH HOH . C 3 HOH A 39 339 31 HOH HOH . C 3 HOH A 40 340 95 HOH HOH . C 3 HOH A 41 341 119 HOH HOH . C 3 HOH A 42 342 92 HOH HOH . C 3 HOH A 43 343 85 HOH HOH . C 3 HOH A 44 344 37 HOH HOH . C 3 HOH A 45 345 118 HOH HOH . C 3 HOH A 46 346 109 HOH HOH . C 3 HOH A 47 347 111 HOH HOH . C 3 HOH A 48 348 115 HOH HOH . C 3 HOH A 49 349 93 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 113 HOH HOH . C 3 HOH A 52 352 110 HOH HOH . C 3 HOH A 53 353 80 HOH HOH . C 3 HOH A 54 354 107 HOH HOH . C 3 HOH A 55 355 1 HOH HOH . C 3 HOH A 56 356 2 HOH HOH . C 3 HOH A 57 357 3 HOH HOH . C 3 HOH A 58 358 5 HOH HOH . C 3 HOH A 59 359 7 HOH HOH . C 3 HOH A 60 360 8 HOH HOH . C 3 HOH A 61 361 9 HOH HOH . C 3 HOH A 62 362 15 HOH HOH . C 3 HOH A 63 363 16 HOH HOH . C 3 HOH A 64 364 17 HOH HOH . C 3 HOH A 65 365 18 HOH HOH . C 3 HOH A 66 366 20 HOH HOH . C 3 HOH A 67 367 21 HOH HOH . C 3 HOH A 68 368 23 HOH HOH . C 3 HOH A 69 369 30 HOH HOH . C 3 HOH A 70 370 32 HOH HOH . C 3 HOH A 71 371 34 HOH HOH . C 3 HOH A 72 372 38 HOH HOH . C 3 HOH A 73 373 40 HOH HOH . C 3 HOH A 74 374 42 HOH HOH . C 3 HOH A 75 375 47 HOH HOH . C 3 HOH A 76 376 48 HOH HOH . C 3 HOH A 77 377 49 HOH HOH . C 3 HOH A 78 378 53 HOH HOH . C 3 HOH A 79 379 54 HOH HOH . C 3 HOH A 80 380 55 HOH HOH . C 3 HOH A 81 381 57 HOH HOH . C 3 HOH A 82 382 58 HOH HOH . C 3 HOH A 83 383 61 HOH HOH . C 3 HOH A 84 384 62 HOH HOH . C 3 HOH A 85 385 64 HOH HOH . C 3 HOH A 86 386 65 HOH HOH . C 3 HOH A 87 387 67 HOH HOH . C 3 HOH A 88 388 72 HOH HOH . C 3 HOH A 89 389 75 HOH HOH . C 3 HOH A 90 390 76 HOH HOH . C 3 HOH A 91 391 77 HOH HOH . C 3 HOH A 92 392 79 HOH HOH . C 3 HOH A 93 393 81 HOH HOH . C 3 HOH A 94 394 82 HOH HOH . C 3 HOH A 95 395 83 HOH HOH . C 3 HOH A 96 396 90 HOH HOH . C 3 HOH A 97 397 91 HOH HOH . C 3 HOH A 98 398 94 HOH HOH . C 3 HOH A 99 399 96 HOH HOH . C 3 HOH A 100 400 98 HOH HOH . C 3 HOH A 101 401 101 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . C 3 HOH A 103 403 103 HOH HOH . C 3 HOH A 104 404 104 HOH HOH . C 3 HOH A 105 405 106 HOH HOH . C 3 HOH A 106 406 114 HOH HOH . C 3 HOH A 107 407 116 HOH HOH . C 3 HOH A 108 408 120 HOH HOH . C 3 HOH A 109 409 121 HOH HOH . C 3 HOH A 110 410 126 HOH HOH . C 3 HOH A 111 411 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 41D . . . B 2 37.955 66.852 3.004 1 29.31 ? C10 41D 201 A 1 HETATM 2 C C01 41D . . . B 2 35.166 66.755 5.383 1 24 ? C01 41D 201 A 1 HETATM 3 C C02 41D . . . B 2 35.56 67.642 6.388 1 23.05 ? C02 41D 201 A 1 HETATM 4 C C03 41D . . . B 2 36.795 68.266 6.224 1 24.5 ? C03 41D 201 A 1 HETATM 5 C C04 41D . . . B 2 37.565 67.999 5.112 1 26.48 ? C04 41D 201 A 1 HETATM 6 N N05 41D . . . B 2 37.139 67.148 4.197 1 26.21 ? N05 41D 201 A 1 HETATM 7 C C06 41D . . . B 2 35.972 66.529 4.301 1 24.14 ? C06 41D 201 A 1 HETATM 8 C C07 41D . . . B 2 38.918 68.708 4.981 1 29.98 ? C07 41D 201 A 1 HETATM 9 C C08 41D . . . B 2 39.214 69.612 6.213 1 32.96 ? C08 41D 201 A 1 HETATM 10 O O09 41D . . . B 2 38.514 70.832 6.073 1 34.85 ? O09 41D 201 A 1 HETATM 11 C C11 41D . . . B 2 37.479 67.742 1.82 1 31.93 ? C11 41D 201 A 1 HETATM 12 C C12 41D . . . B 2 38.023 67.306 0.51 1 35.85 ? C12 41D 201 A 1 HETATM 13 S S13 41D . . . B 2 37.475 68.392 -0.782 1 39.46 ? S13 41D 201 A 1 HETATM 14 O O14 41D . . . B 2 35.971 68.272 -0.948 1 40.15 -1 O14 41D 201 A 1 HETATM 15 O O15 41D . . . B 2 37.895 69.856 -0.468 1 40.63 ? O15 41D 201 A 1 HETATM 16 O O16 41D . . . B 2 38.195 68.12 -2.064 1 40.75 ? O16 41D 201 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #