data_4XK4
#
_model_server_result.job_id            A6LpYhYp2pmEVki9h6nG5Q 
_model_server_result.datetime_utc      '2024-12-27 01:03:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":300}' 
#
_entry.id    4XK4 
#
_exptl.entry_id    4XK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.103 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.37 
_cell.angle_beta          88.8 
_cell.angle_gamma         62.37 
_cell.entry_id            4XK4 
_cell.length_a            50.892 
_cell.length_b            55.672 
_cell.length_c            85.242 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C4 H6 N2 O2' 
_chem_comp.formula_weight    114.103 
_chem_comp.id                DUC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DIHYDROURACIL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C2 DUC sing 83 n n 
N3 C4 DUC sing 84 n n 
N3 HN3 DUC sing 85 n n 
C2 O2 DUC doub 86 n n 
C2 N1 DUC sing 87 n n 
N1 C6 DUC sing 88 n n 
N1 HN1 DUC sing 89 n n 
C6 C5 DUC sing 90 n n 
C6 H61 DUC sing 91 n n 
C6 H62 DUC sing 92 n n 
C5 C4 DUC sing 93 n n 
C5 H51 DUC sing 94 n n 
C5 H52 DUC sing 95 n n 
C4 O4 DUC doub 96 n n 
#
_atom_sites.entry_id                     4XK4 
_atom_sites.fract_transf_matrix[1][1]    0.019649 
_atom_sites.fract_transf_matrix[1][2]    -0.010285 
_atom_sites.fract_transf_matrix[1][3]    -0.000194 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020274 
_atom_sites.fract_transf_matrix[2][3]    -0.00043 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DUC A 1 300 300 DUC DUC . 
F 2 DUC B 1 300 300 DUC DUC . 
G 2 DUC C 1 300 300 DUC DUC . 
H 2 DUC D 1 300 300 DUC DUC . 
I 3 HOH A 1 401 106 HOH HOH . 
I 3 HOH A 2 402 218 HOH HOH . 
I 3 HOH A 3 403 98 HOH HOH . 
I 3 HOH A 4 404 100 HOH HOH . 
I 3 HOH A 5 405 9 HOH HOH . 
I 3 HOH A 6 406 107 HOH HOH . 
I 3 HOH A 7 407 284 HOH HOH . 
I 3 HOH A 8 408 134 HOH HOH . 
I 3 HOH A 9 409 94 HOH HOH . 
I 3 HOH A 10 410 118 HOH HOH . 
I 3 HOH A 11 411 167 HOH HOH . 
I 3 HOH A 12 412 152 HOH HOH . 
I 3 HOH A 13 413 181 HOH HOH . 
I 3 HOH A 14 414 235 HOH HOH . 
I 3 HOH A 15 415 41 HOH HOH . 
I 3 HOH A 16 416 34 HOH HOH . 
I 3 HOH A 17 417 126 HOH HOH . 
I 3 HOH A 18 418 283 HOH HOH . 
I 3 HOH A 19 419 24 HOH HOH . 
I 3 HOH A 20 420 67 HOH HOH . 
I 3 HOH A 21 421 128 HOH HOH . 
I 3 HOH A 22 422 158 HOH HOH . 
I 3 HOH A 23 423 140 HOH HOH . 
I 3 HOH A 24 424 62 HOH HOH . 
I 3 HOH A 25 425 164 HOH HOH . 
I 3 HOH A 26 426 28 HOH HOH . 
I 3 HOH A 27 427 37 HOH HOH . 
I 3 HOH A 28 428 252 HOH HOH . 
I 3 HOH A 29 429 117 HOH HOH . 
I 3 HOH A 30 430 110 HOH HOH . 
I 3 HOH A 31 431 27 HOH HOH . 
I 3 HOH A 32 432 63 HOH HOH . 
I 3 HOH A 33 433 242 HOH HOH . 
I 3 HOH A 34 434 154 HOH HOH . 
I 3 HOH A 35 435 139 HOH HOH . 
I 3 HOH A 36 436 61 HOH HOH . 
I 3 HOH A 37 437 64 HOH HOH . 
I 3 HOH A 38 438 193 HOH HOH . 
I 3 HOH A 39 439 38 HOH HOH . 
I 3 HOH A 40 440 18 HOH HOH . 
I 3 HOH A 41 441 168 HOH HOH . 
I 3 HOH A 42 442 116 HOH HOH . 
I 3 HOH A 43 443 270 HOH HOH . 
I 3 HOH A 44 444 200 HOH HOH . 
I 3 HOH A 45 445 223 HOH HOH . 
I 3 HOH A 46 446 211 HOH HOH . 
I 3 HOH A 47 447 192 HOH HOH . 
I 3 HOH A 48 448 278 HOH HOH . 
I 3 HOH A 49 449 68 HOH HOH . 
I 3 HOH A 50 450 20 HOH HOH . 
I 3 HOH A 51 451 14 HOH HOH . 
I 3 HOH A 52 452 188 HOH HOH . 
I 3 HOH A 53 453 103 HOH HOH . 
I 3 HOH A 54 454 237 HOH HOH . 
I 3 HOH A 55 455 231 HOH HOH . 
I 3 HOH A 56 456 199 HOH HOH . 
I 3 HOH A 57 457 217 HOH HOH . 
I 3 HOH A 58 458 184 HOH HOH . 
I 3 HOH A 59 459 289 HOH HOH . 
I 3 HOH A 60 460 176 HOH HOH . 
I 3 HOH A 61 461 174 HOH HOH . 
I 3 HOH A 62 462 222 HOH HOH . 
I 3 HOH A 63 463 271 HOH HOH . 
I 3 HOH A 64 464 247 HOH HOH . 
I 3 HOH A 65 465 65 HOH HOH . 
J 3 HOH B 1 401 12 HOH HOH . 
J 3 HOH B 2 402 25 HOH HOH . 
J 3 HOH B 3 403 15 HOH HOH . 
J 3 HOH B 4 404 290 HOH HOH . 
J 3 HOH B 5 405 83 HOH HOH . 
J 3 HOH B 6 406 155 HOH HOH . 
J 3 HOH B 7 407 240 HOH HOH . 
J 3 HOH B 8 408 76 HOH HOH . 
J 3 HOH B 9 409 169 HOH HOH . 
J 3 HOH B 10 410 22 HOH HOH . 
J 3 HOH B 11 411 148 HOH HOH . 
J 3 HOH B 12 412 11 HOH HOH . 
J 3 HOH B 13 413 16 HOH HOH . 
J 3 HOH B 14 414 108 HOH HOH . 
J 3 HOH B 15 415 262 HOH HOH . 
J 3 HOH B 16 416 55 HOH HOH . 
J 3 HOH B 17 417 135 HOH HOH . 
J 3 HOH B 18 418 99 HOH HOH . 
J 3 HOH B 19 419 170 HOH HOH . 
J 3 HOH B 20 420 59 HOH HOH . 
J 3 HOH B 21 421 1 HOH HOH . 
J 3 HOH B 22 422 31 HOH HOH . 
J 3 HOH B 23 423 84 HOH HOH . 
J 3 HOH B 24 424 186 HOH HOH . 
J 3 HOH B 25 425 77 HOH HOH . 
J 3 HOH B 26 426 125 HOH HOH . 
J 3 HOH B 27 427 91 HOH HOH . 
J 3 HOH B 28 428 163 HOH HOH . 
J 3 HOH B 29 429 8 HOH HOH . 
J 3 HOH B 30 430 5 HOH HOH . 
J 3 HOH B 31 431 109 HOH HOH . 
J 3 HOH B 32 432 93 HOH HOH . 
J 3 HOH B 33 433 286 HOH HOH . 
J 3 HOH B 34 434 124 HOH HOH . 
J 3 HOH B 35 435 89 HOH HOH . 
J 3 HOH B 36 436 244 HOH HOH . 
J 3 HOH B 37 437 26 HOH HOH . 
J 3 HOH B 38 438 96 HOH HOH . 
J 3 HOH B 39 439 80 HOH HOH . 
J 3 HOH B 40 440 70 HOH HOH . 
J 3 HOH B 41 441 30 HOH HOH . 
J 3 HOH B 42 442 35 HOH HOH . 
J 3 HOH B 43 443 74 HOH HOH . 
J 3 HOH B 44 444 43 HOH HOH . 
J 3 HOH B 45 445 130 HOH HOH . 
J 3 HOH B 46 446 49 HOH HOH . 
J 3 HOH B 47 447 66 HOH HOH . 
J 3 HOH B 48 448 60 HOH HOH . 
J 3 HOH B 49 449 209 HOH HOH . 
J 3 HOH B 50 450 146 HOH HOH . 
J 3 HOH B 51 451 40 HOH HOH . 
J 3 HOH B 52 452 97 HOH HOH . 
J 3 HOH B 53 453 121 HOH HOH . 
J 3 HOH B 54 454 197 HOH HOH . 
J 3 HOH B 55 455 256 HOH HOH . 
J 3 HOH B 56 456 269 HOH HOH . 
J 3 HOH B 57 457 227 HOH HOH . 
J 3 HOH B 58 458 203 HOH HOH . 
J 3 HOH B 59 459 51 HOH HOH . 
J 3 HOH B 60 460 229 HOH HOH . 
J 3 HOH B 61 461 264 HOH HOH . 
J 3 HOH B 62 462 239 HOH HOH . 
J 3 HOH B 63 463 207 HOH HOH . 
K 3 HOH C 1 401 6 HOH HOH . 
K 3 HOH C 2 402 261 HOH HOH . 
K 3 HOH C 3 403 29 HOH HOH . 
K 3 HOH C 4 404 115 HOH HOH . 
K 3 HOH C 5 405 33 HOH HOH . 
K 3 HOH C 6 406 102 HOH HOH . 
K 3 HOH C 7 407 161 HOH HOH . 
K 3 HOH C 8 408 162 HOH HOH . 
K 3 HOH C 9 409 236 HOH HOH . 
K 3 HOH C 10 410 145 HOH HOH . 
K 3 HOH C 11 411 277 HOH HOH . 
K 3 HOH C 12 412 189 HOH HOH . 
K 3 HOH C 13 413 92 HOH HOH . 
K 3 HOH C 14 414 250 HOH HOH . 
K 3 HOH C 15 415 129 HOH HOH . 
K 3 HOH C 16 416 254 HOH HOH . 
K 3 HOH C 17 417 122 HOH HOH . 
K 3 HOH C 18 418 191 HOH HOH . 
K 3 HOH C 19 419 2 HOH HOH . 
K 3 HOH C 20 420 71 HOH HOH . 
K 3 HOH C 21 421 44 HOH HOH . 
K 3 HOH C 22 422 292 HOH HOH . 
K 3 HOH C 23 423 171 HOH HOH . 
K 3 HOH C 24 424 166 HOH HOH . 
K 3 HOH C 25 425 53 HOH HOH . 
K 3 HOH C 26 426 253 HOH HOH . 
K 3 HOH C 27 427 248 HOH HOH . 
K 3 HOH C 28 428 153 HOH HOH . 
K 3 HOH C 29 429 172 HOH HOH . 
K 3 HOH C 30 430 201 HOH HOH . 
K 3 HOH C 31 431 112 HOH HOH . 
K 3 HOH C 32 432 57 HOH HOH . 
K 3 HOH C 33 433 19 HOH HOH . 
K 3 HOH C 34 434 113 HOH HOH . 
K 3 HOH C 35 435 143 HOH HOH . 
K 3 HOH C 36 436 82 HOH HOH . 
K 3 HOH C 37 437 131 HOH HOH . 
K 3 HOH C 38 438 272 HOH HOH . 
K 3 HOH C 39 439 141 HOH HOH . 
K 3 HOH C 40 440 275 HOH HOH . 
K 3 HOH C 41 441 142 HOH HOH . 
K 3 HOH C 42 442 160 HOH HOH . 
K 3 HOH C 43 443 46 HOH HOH . 
K 3 HOH C 44 444 233 HOH HOH . 
K 3 HOH C 45 445 267 HOH HOH . 
K 3 HOH C 46 446 127 HOH HOH . 
K 3 HOH C 47 447 205 HOH HOH . 
K 3 HOH C 48 448 204 HOH HOH . 
K 3 HOH C 49 449 276 HOH HOH . 
K 3 HOH C 50 450 255 HOH HOH . 
K 3 HOH C 51 451 45 HOH HOH . 
K 3 HOH C 52 452 202 HOH HOH . 
K 3 HOH C 53 453 245 HOH HOH . 
K 3 HOH C 54 454 265 HOH HOH . 
K 3 HOH C 55 455 78 HOH HOH . 
K 3 HOH C 56 456 241 HOH HOH . 
K 3 HOH C 57 457 268 HOH HOH . 
L 3 HOH D 1 401 105 HOH HOH . 
L 3 HOH D 2 402 10 HOH HOH . 
L 3 HOH D 3 403 88 HOH HOH . 
L 3 HOH D 4 404 213 HOH HOH . 
L 3 HOH D 5 405 212 HOH HOH . 
L 3 HOH D 6 406 58 HOH HOH . 
L 3 HOH D 7 407 3 HOH HOH . 
L 3 HOH D 8 408 220 HOH HOH . 
L 3 HOH D 9 409 54 HOH HOH . 
L 3 HOH D 10 410 132 HOH HOH . 
L 3 HOH D 11 411 39 HOH HOH . 
L 3 HOH D 12 412 50 HOH HOH . 
L 3 HOH D 13 413 90 HOH HOH . 
L 3 HOH D 14 414 120 HOH HOH . 
L 3 HOH D 15 415 198 HOH HOH . 
L 3 HOH D 16 416 147 HOH HOH . 
L 3 HOH D 17 417 225 HOH HOH . 
L 3 HOH D 18 418 4 HOH HOH . 
L 3 HOH D 19 419 13 HOH HOH . 
L 3 HOH D 20 420 258 HOH HOH . 
L 3 HOH D 21 421 196 HOH HOH . 
L 3 HOH D 22 422 138 HOH HOH . 
L 3 HOH D 23 423 104 HOH HOH . 
L 3 HOH D 24 424 123 HOH HOH . 
L 3 HOH D 25 425 87 HOH HOH . 
L 3 HOH D 26 426 178 HOH HOH . 
L 3 HOH D 27 427 47 HOH HOH . 
L 3 HOH D 28 428 17 HOH HOH . 
L 3 HOH D 29 429 208 HOH HOH . 
L 3 HOH D 30 430 180 HOH HOH . 
L 3 HOH D 31 431 119 HOH HOH . 
L 3 HOH D 32 432 111 HOH HOH . 
L 3 HOH D 33 433 75 HOH HOH . 
L 3 HOH D 34 434 185 HOH HOH . 
L 3 HOH D 35 435 56 HOH HOH . 
L 3 HOH D 36 436 165 HOH HOH . 
L 3 HOH D 37 437 79 HOH HOH . 
L 3 HOH D 38 438 21 HOH HOH . 
L 3 HOH D 39 439 179 HOH HOH . 
L 3 HOH D 40 440 36 HOH HOH . 
L 3 HOH D 41 441 259 HOH HOH . 
L 3 HOH D 42 442 86 HOH HOH . 
L 3 HOH D 43 443 7 HOH HOH . 
L 3 HOH D 44 444 280 HOH HOH . 
L 3 HOH D 45 445 260 HOH HOH . 
L 3 HOH D 46 446 214 HOH HOH . 
L 3 HOH D 47 447 195 HOH HOH . 
L 3 HOH D 48 448 42 HOH HOH . 
L 3 HOH D 49 449 190 HOH HOH . 
L 3 HOH D 50 450 274 HOH HOH . 
L 3 HOH D 51 451 206 HOH HOH . 
L 3 HOH D 52 452 69 HOH HOH . 
L 3 HOH D 53 453 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 DUC . . . E 2 -0.247 2.425 -4.397 1 38.8 ? N3 DUC 300 A 1 
HETATM 2 C C2 DUC . . . E 2 -0.906 1.793 -5.439 1 38.76 ? C2 DUC 300 A 1 
HETATM 3 O O2 DUC . . . E 2 -0.265 1.172 -6.278 1 40.43 ? O2 DUC 300 A 1 
HETATM 4 N N1 DUC . . . E 2 -2.268 1.71 -5.426 1 39.54 ? N1 DUC 300 A 1 
HETATM 5 C C6 DUC . . . E 2 -3.01 2.229 -4.277 1 38.75 ? C6 DUC 300 A 1 
HETATM 6 C C5 DUC . . . E 2 -2.329 3.47 -3.707 1 39.16 ? C5 DUC 300 A 1 
HETATM 7 C C4 DUC . . . E 2 -0.972 3.199 -3.476 1 39.47 ? C4 DUC 300 A 1 
HETATM 8 O O4 DUC . . . E 2 -0.379 3.752 -2.566 1 45.22 ? O4 DUC 300 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           1330 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           8 
#