data_4XKA # _model_server_result.job_id 9f23Rs8EUTPAEZh10J1WiA _model_server_result.datetime_utc '2024-11-16 15:51:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4XKA # _exptl.entry_id 4XKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XKA _cell.length_a 156.32 _cell.length_b 156.32 _cell.length_c 45.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4XKA _atom_sites.fract_transf_matrix[1][1] 0.006397 _atom_sites.fract_transf_matrix[1][2] 0.003693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 1 GOL GOL . D 3 TAM A 1 303 1 TAM TAM . E 4 HOH A 1 401 29 HOH HOH . E 4 HOH A 2 402 16 HOH HOH . E 4 HOH A 3 403 7 HOH HOH . E 4 HOH A 4 404 46 HOH HOH . E 4 HOH A 5 405 50 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 10 HOH HOH . E 4 HOH A 8 408 71 HOH HOH . E 4 HOH A 9 409 23 HOH HOH . E 4 HOH A 10 410 28 HOH HOH . E 4 HOH A 11 411 24 HOH HOH . E 4 HOH A 12 412 30 HOH HOH . E 4 HOH A 13 413 5 HOH HOH . E 4 HOH A 14 414 36 HOH HOH . E 4 HOH A 15 415 26 HOH HOH . E 4 HOH A 16 416 76 HOH HOH . E 4 HOH A 17 417 47 HOH HOH . E 4 HOH A 18 418 8 HOH HOH . E 4 HOH A 19 419 89 HOH HOH . E 4 HOH A 20 420 60 HOH HOH . E 4 HOH A 21 421 62 HOH HOH . E 4 HOH A 22 422 85 HOH HOH . E 4 HOH A 23 423 54 HOH HOH . E 4 HOH A 24 424 88 HOH HOH . E 4 HOH A 25 425 49 HOH HOH . E 4 HOH A 26 426 42 HOH HOH . E 4 HOH A 27 427 43 HOH HOH . E 4 HOH A 28 428 44 HOH HOH . E 4 HOH A 29 429 1 HOH HOH . E 4 HOH A 30 430 2 HOH HOH . E 4 HOH A 31 431 3 HOH HOH . E 4 HOH A 32 432 4 HOH HOH . E 4 HOH A 33 433 9 HOH HOH . E 4 HOH A 34 434 11 HOH HOH . E 4 HOH A 35 435 12 HOH HOH . E 4 HOH A 36 436 13 HOH HOH . E 4 HOH A 37 437 14 HOH HOH . E 4 HOH A 38 438 15 HOH HOH . E 4 HOH A 39 439 17 HOH HOH . E 4 HOH A 40 440 18 HOH HOH . E 4 HOH A 41 441 19 HOH HOH . E 4 HOH A 42 442 20 HOH HOH . E 4 HOH A 43 443 21 HOH HOH . E 4 HOH A 44 444 22 HOH HOH . E 4 HOH A 45 445 25 HOH HOH . E 4 HOH A 46 446 27 HOH HOH . E 4 HOH A 47 447 31 HOH HOH . E 4 HOH A 48 448 32 HOH HOH . E 4 HOH A 49 449 33 HOH HOH . E 4 HOH A 50 450 37 HOH HOH . E 4 HOH A 51 451 38 HOH HOH . E 4 HOH A 52 452 39 HOH HOH . E 4 HOH A 53 453 40 HOH HOH . E 4 HOH A 54 454 41 HOH HOH . E 4 HOH A 55 455 45 HOH HOH . E 4 HOH A 56 456 48 HOH HOH . E 4 HOH A 57 457 51 HOH HOH . E 4 HOH A 58 458 52 HOH HOH . E 4 HOH A 59 459 53 HOH HOH . E 4 HOH A 60 460 55 HOH HOH . E 4 HOH A 61 461 56 HOH HOH . E 4 HOH A 62 462 57 HOH HOH . E 4 HOH A 63 463 58 HOH HOH . E 4 HOH A 64 464 59 HOH HOH . E 4 HOH A 65 465 61 HOH HOH . E 4 HOH A 66 466 63 HOH HOH . E 4 HOH A 67 467 64 HOH HOH . E 4 HOH A 68 468 65 HOH HOH . E 4 HOH A 69 469 66 HOH HOH . E 4 HOH A 70 470 67 HOH HOH . E 4 HOH A 71 471 68 HOH HOH . E 4 HOH A 72 472 69 HOH HOH . E 4 HOH A 73 473 70 HOH HOH . E 4 HOH A 74 474 72 HOH HOH . E 4 HOH A 75 475 74 HOH HOH . E 4 HOH A 76 476 75 HOH HOH . E 4 HOH A 77 477 77 HOH HOH . E 4 HOH A 78 478 78 HOH HOH . E 4 HOH A 79 479 79 HOH HOH . E 4 HOH A 80 480 80 HOH HOH . E 4 HOH A 81 481 81 HOH HOH . E 4 HOH A 82 482 82 HOH HOH . E 4 HOH A 83 483 83 HOH HOH . E 4 HOH A 84 484 84 HOH HOH . E 4 HOH A 85 485 86 HOH HOH . E 4 HOH A 86 486 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -21.249 64.872 -0.032 1 51.31 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 2 -20.185 64.358 0.78 1 49.31 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 2 -22.646 64.807 0.624 1 51.24 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 2 -23.189 66.092 0.773 1 54.58 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 2 -23.594 64.033 -0.285 1 52.39 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 2 -24.664 63.426 0.401 1 50.9 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #