data_4XKL # _model_server_result.job_id ojGid4fPyAImRXz3YELdRQ _model_server_result.datetime_utc '2024-11-22 12:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 4XKL # _exptl.entry_id 4XKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.49 _cell.angle_gamma 90 _cell.entry_id 4XKL _cell.length_a 83.95 _cell.length_b 73.8 _cell.length_c 39.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 6 B CYS 419 1_555 D SG CYS 6 D CYS 419 4_758 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc1 B SG CYS 9 B CYS 422 1_555 H ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 B SG CYS 12 B CYS 425 1_555 H ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 B NE2 HIS 27 B HIS 440 1_555 H ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 B NE2 HIS 31 B HIS 444 1_555 H ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 D SG CYS 9 D CYS 422 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 D SG CYS 12 D CYS 425 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D NE2 HIS 27 D HIS 440 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 D NE2 HIS 31 D HIS 444 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XKL _atom_sites.fract_transf_matrix[1][1] 0.011912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 101 2 GOL GOL . F 4 ACT B 1 501 1 ACT ACT . G 4 ACT B 1 502 3 ACT ACT . H 5 ZN B 1 503 1 ZN ZN . I 3 GOL C 1 101 1 GOL GOL . J 4 ACT C 1 102 2 ACT ACT . K 4 ACT D 1 501 4 ACT ACT . L 5 ZN D 1 502 2 ZN ZN . M 6 HOH A 1 201 40 HOH HOH . M 6 HOH A 2 202 31 HOH HOH . M 6 HOH A 3 203 20 HOH HOH . M 6 HOH A 4 204 71 HOH HOH . M 6 HOH A 5 205 35 HOH HOH . M 6 HOH A 6 206 24 HOH HOH . M 6 HOH A 7 207 85 HOH HOH . M 6 HOH A 8 208 102 HOH HOH . M 6 HOH A 9 209 53 HOH HOH . M 6 HOH A 10 210 5 HOH HOH . M 6 HOH A 11 211 69 HOH HOH . M 6 HOH A 12 212 66 HOH HOH . M 6 HOH A 13 213 25 HOH HOH . M 6 HOH A 14 214 104 HOH HOH . M 6 HOH A 15 215 106 HOH HOH . M 6 HOH A 16 216 86 HOH HOH . M 6 HOH A 17 217 62 HOH HOH . M 6 HOH A 18 218 32 HOH HOH . M 6 HOH A 19 219 65 HOH HOH . M 6 HOH A 20 220 100 HOH HOH . M 6 HOH A 21 221 37 HOH HOH . M 6 HOH A 22 222 12 HOH HOH . M 6 HOH A 23 223 97 HOH HOH . M 6 HOH A 24 224 83 HOH HOH . M 6 HOH A 25 225 49 HOH HOH . M 6 HOH A 26 226 2 HOH HOH . M 6 HOH A 27 227 3 HOH HOH . M 6 HOH A 28 228 13 HOH HOH . M 6 HOH A 29 229 16 HOH HOH . M 6 HOH A 30 230 26 HOH HOH . M 6 HOH A 31 231 33 HOH HOH . M 6 HOH A 32 232 36 HOH HOH . M 6 HOH A 33 233 38 HOH HOH . M 6 HOH A 34 234 44 HOH HOH . M 6 HOH A 35 235 45 HOH HOH . M 6 HOH A 36 236 46 HOH HOH . M 6 HOH A 37 237 50 HOH HOH . M 6 HOH A 38 238 51 HOH HOH . M 6 HOH A 39 239 54 HOH HOH . M 6 HOH A 40 240 55 HOH HOH . M 6 HOH A 41 241 60 HOH HOH . M 6 HOH A 42 242 61 HOH HOH . M 6 HOH A 43 243 67 HOH HOH . M 6 HOH A 44 244 72 HOH HOH . M 6 HOH A 45 245 79 HOH HOH . M 6 HOH A 46 246 82 HOH HOH . M 6 HOH A 47 247 87 HOH HOH . M 6 HOH A 48 248 91 HOH HOH . M 6 HOH A 49 249 93 HOH HOH . M 6 HOH A 50 250 103 HOH HOH . N 6 HOH B 1 601 41 HOH HOH . N 6 HOH B 2 602 21 HOH HOH . N 6 HOH B 3 603 4 HOH HOH . N 6 HOH B 4 604 43 HOH HOH . N 6 HOH B 5 605 68 HOH HOH . N 6 HOH B 6 606 17 HOH HOH . N 6 HOH B 7 607 64 HOH HOH . N 6 HOH B 8 608 10 HOH HOH . N 6 HOH B 9 609 27 HOH HOH . N 6 HOH B 10 610 34 HOH HOH . N 6 HOH B 11 611 42 HOH HOH . N 6 HOH B 12 612 47 HOH HOH . N 6 HOH B 13 613 52 HOH HOH . N 6 HOH B 14 614 73 HOH HOH . N 6 HOH B 15 615 99 HOH HOH . N 6 HOH B 16 616 101 HOH HOH . O 6 HOH C 1 201 23 HOH HOH . O 6 HOH C 2 202 6 HOH HOH . O 6 HOH C 3 203 7 HOH HOH . O 6 HOH C 4 204 28 HOH HOH . O 6 HOH C 5 205 11 HOH HOH . O 6 HOH C 6 206 94 HOH HOH . O 6 HOH C 7 207 9 HOH HOH . O 6 HOH C 8 208 70 HOH HOH . O 6 HOH C 9 209 80 HOH HOH . O 6 HOH C 10 210 30 HOH HOH . O 6 HOH C 11 211 105 HOH HOH . O 6 HOH C 12 212 74 HOH HOH . O 6 HOH C 13 213 8 HOH HOH . O 6 HOH C 14 214 14 HOH HOH . O 6 HOH C 15 215 15 HOH HOH . O 6 HOH C 16 216 18 HOH HOH . O 6 HOH C 17 217 19 HOH HOH . O 6 HOH C 18 218 29 HOH HOH . O 6 HOH C 19 219 39 HOH HOH . O 6 HOH C 20 220 48 HOH HOH . O 6 HOH C 21 221 58 HOH HOH . O 6 HOH C 22 222 59 HOH HOH . O 6 HOH C 23 223 63 HOH HOH . O 6 HOH C 24 224 75 HOH HOH . O 6 HOH C 25 225 76 HOH HOH . O 6 HOH C 26 226 81 HOH HOH . O 6 HOH C 27 227 89 HOH HOH . O 6 HOH C 28 228 90 HOH HOH . O 6 HOH C 29 229 95 HOH HOH . O 6 HOH C 30 230 98 HOH HOH . P 6 HOH D 1 601 92 HOH HOH . P 6 HOH D 2 602 22 HOH HOH . P 6 HOH D 3 603 1 HOH HOH . P 6 HOH D 4 604 78 HOH HOH . P 6 HOH D 5 605 56 HOH HOH . P 6 HOH D 6 606 57 HOH HOH . P 6 HOH D 7 607 77 HOH HOH . P 6 HOH D 8 608 84 HOH HOH . P 6 HOH D 9 609 88 HOH HOH . P 6 HOH D 10 610 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 99.293 _atom_site.Cartn_y 7.449 _atom_site.Cartn_z 36.354 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #