data_4XM8 # _model_server_result.job_id TfefLvid4xb2QZgEamqedA _model_server_result.datetime_utc '2024-12-26 20:48:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4XM8 # _exptl.entry_id 4XM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-hydroxy-N~2~-{[3-(methoxymethyl)phenyl]sulfonyl}-N~2~-(2-methylpropyl)-D-valinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XM8 _cell.length_a 57.631 _cell.length_b 77.076 _cell.length_c 138.844 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 425 A HIS 686 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A NE2 HIS 429 A HIS 690 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc3 A OE1 GLU 474 A GLU 735 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 B O5 41T . A 41T 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 B O3 41T . A 41T 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C17 H28 N2 O5 S' _chem_comp.formula_weight 372.48 _chem_comp.id 41T _chem_comp.mon_nstd_flag . _chem_comp.name N-hydroxy-N~2~-{[3-(methoxymethyl)phenyl]sulfonyl}-N~2~-(2-methylpropyl)-D-valinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 S11 41T doub 1 n n C25 C23 41T sing 2 n n O12 S11 41T doub 3 n n C24 C23 41T sing 4 n n C22 O21 41T sing 5 n n S11 C14 41T sing 6 n n S11 N6 41T sing 7 n n O21 C20 41T sing 8 n n C23 C1 41T sing 9 n n C14 C15 41T doub 10 n y C14 C19 41T sing 11 n y C15 C16 41T sing 12 n y C19 C18 41T doub 13 n y C1 N6 41T sing 14 n n C1 C2 41T sing 15 n n C16 C20 41T sing 16 n n C16 C17 41T doub 17 n y N6 C7 41T sing 18 n n C18 C17 41T sing 19 n y C2 N4 41T sing 20 n n C2 O3 41T doub 21 n n N4 O5 41T sing 22 n n C7 C8 41T sing 23 n n C8 C9 41T sing 24 n n C8 C10 41T sing 25 n n C1 H1 41T sing 26 n n O5 H2 41T sing 27 n n C7 H3 41T sing 28 n n C7 H4 41T sing 29 n n C8 H5 41T sing 30 n n C9 H6 41T sing 31 n n C9 H7 41T sing 32 n n C9 H8 41T sing 33 n n C10 H9 41T sing 34 n n C10 H10 41T sing 35 n n C10 H11 41T sing 36 n n C15 H12 41T sing 37 n n C19 H13 41T sing 38 n n C20 H14 41T sing 39 n n C20 H15 41T sing 40 n n C22 H16 41T sing 41 n n C22 H17 41T sing 42 n n C22 H18 41T sing 43 n n C24 H19 41T sing 44 n n C24 H20 41T sing 45 n n C24 H21 41T sing 46 n n N4 H22 41T sing 47 n n C17 H23 41T sing 48 n n C18 H24 41T sing 49 n n C23 H25 41T sing 50 n n C25 H26 41T sing 51 n n C25 H27 41T sing 52 n n C25 H28 41T sing 53 n n # _atom_sites.entry_id 4XM8 _atom_sites.fract_transf_matrix[1][1] 0.017352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 41T A 1 801 1 41T INH . C 3 ZN A 1 802 1 ZN ZN . D 4 HOH A 1 901 7 HOH HOH . D 4 HOH A 2 902 1 HOH HOH . D 4 HOH A 3 903 15 HOH HOH . D 4 HOH A 4 904 45 HOH HOH . D 4 HOH A 5 905 28 HOH HOH . D 4 HOH A 6 906 37 HOH HOH . D 4 HOH A 7 907 41 HOH HOH . D 4 HOH A 8 908 32 HOH HOH . D 4 HOH A 9 909 22 HOH HOH . D 4 HOH A 10 910 2 HOH HOH . D 4 HOH A 11 911 3 HOH HOH . D 4 HOH A 12 912 4 HOH HOH . D 4 HOH A 13 913 5 HOH HOH . D 4 HOH A 14 914 6 HOH HOH . D 4 HOH A 15 915 8 HOH HOH . D 4 HOH A 16 916 9 HOH HOH . D 4 HOH A 17 917 10 HOH HOH . D 4 HOH A 18 918 11 HOH HOH . D 4 HOH A 19 919 12 HOH HOH . D 4 HOH A 20 920 13 HOH HOH . D 4 HOH A 21 921 14 HOH HOH . D 4 HOH A 22 922 16 HOH HOH . D 4 HOH A 23 923 17 HOH HOH . D 4 HOH A 24 924 18 HOH HOH . D 4 HOH A 25 925 19 HOH HOH . D 4 HOH A 26 926 20 HOH HOH . D 4 HOH A 27 927 21 HOH HOH . D 4 HOH A 28 928 23 HOH HOH . D 4 HOH A 29 929 24 HOH HOH . D 4 HOH A 30 930 25 HOH HOH . D 4 HOH A 31 931 26 HOH HOH . D 4 HOH A 32 932 27 HOH HOH . D 4 HOH A 33 933 29 HOH HOH . D 4 HOH A 34 934 30 HOH HOH . D 4 HOH A 35 935 31 HOH HOH . D 4 HOH A 36 936 33 HOH HOH . D 4 HOH A 37 937 34 HOH HOH . D 4 HOH A 38 938 35 HOH HOH . D 4 HOH A 39 939 36 HOH HOH . D 4 HOH A 40 940 38 HOH HOH . D 4 HOH A 41 941 39 HOH HOH . D 4 HOH A 42 942 40 HOH HOH . D 4 HOH A 43 943 42 HOH HOH . D 4 HOH A 44 944 43 HOH HOH . D 4 HOH A 45 945 44 HOH HOH . D 4 HOH A 46 946 47 HOH HOH . D 4 HOH A 47 947 48 HOH HOH . D 4 HOH A 48 948 49 HOH HOH . D 4 HOH A 49 949 50 HOH HOH . D 4 HOH A 50 950 51 HOH HOH . D 4 HOH A 51 951 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 41T . . . B 2 11.089 19.183 27.426 1 32.97 ? C1 41T 801 A 1 HETATM 2 C C2 41T . . . B 2 11.996 19.241 28.628 1 31.47 ? C2 41T 801 A 1 HETATM 3 O O5 41T . . . B 2 13.848 20.262 29.704 1 31.4 ? O5 41T 801 A 1 HETATM 4 N N6 41T . . . B 2 9.684 19.549 27.671 1 34.2 ? N6 41T 801 A 1 HETATM 5 C C7 41T . . . B 2 9.07 18.959 28.866 1 33.33 ? C7 41T 801 A 1 HETATM 6 C C8 41T . . . B 2 8.319 20.031 29.658 1 36.19 ? C8 41T 801 A 1 HETATM 7 C C9 41T . . . B 2 9.274 21.009 30.328 1 28.91 ? C9 41T 801 A 1 HETATM 8 C C10 41T . . . B 2 7.372 19.422 30.687 1 32.23 ? C10 41T 801 A 1 HETATM 9 C C14 41T . . . B 2 8.769 21.967 27.09 1 36.4 ? C14 41T 801 A 1 HETATM 10 C C15 41T . . . B 2 7.492 22.512 27.149 1 42.58 ? C15 41T 801 A 1 HETATM 11 C C16 41T . . . B 2 7.312 23.846 27.488 1 43.3 ? C16 41T 801 A 1 HETATM 12 C C19 41T . . . B 2 9.877 22.76 27.364 1 34.21 ? C19 41T 801 A 1 HETATM 13 C C20 41T . . . B 2 5.911 24.413 27.543 1 41.89 ? C20 41T 801 A 1 HETATM 14 C C22 41T . . . B 2 4.48 26.072 26.677 1 44.42 ? C22 41T 801 A 1 HETATM 15 C C24 41T . . . B 2 12.554 17.352 26.524 1 26.37 ? C24 41T 801 A 1 HETATM 16 O O3 41T . . . B 2 11.921 18.216 29.678 1 28.19 ? O3 41T 801 A 1 HETATM 17 N N4 41T . . . B 2 12.92 20.24 28.717 1 25.73 ? N4 41T 801 A 1 HETATM 18 S S11 41T . . . B 2 8.917 20.432 26.685 1 40.95 ? S11 41T 801 A 1 HETATM 19 O O12 41T . . . B 2 7.597 19.897 26.511 1 45.36 ? O12 41T 801 A 1 HETATM 20 O O13 41T . . . B 2 9.589 20.401 25.418 1 34.97 ? O13 41T 801 A 1 HETATM 21 C C17 41T . . . B 2 8.419 24.641 27.76 1 39.11 ? C17 41T 801 A 1 HETATM 22 C C18 41T . . . B 2 9.7 24.099 27.701 1 33.69 ? C18 41T 801 A 1 HETATM 23 O O21 41T . . . B 2 5.836 25.682 26.899 1 49.65 ? O21 41T 801 A 1 HETATM 24 C C23 41T . . . B 2 11.136 17.726 26.948 1 30.72 ? C23 41T 801 A 1 HETATM 25 C C25 41T . . . B 2 10.145 17.353 25.847 1 27.35 ? C25 41T 801 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #