data_4XME
#
_model_server_result.job_id            0oQi9VfVy9EbHQMqGuY4aw 
_model_server_result.datetime_utc      '2024-11-23 02:34:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xme 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4XME 
#
_exptl.entry_id    4XME 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.35 
_cell.angle_gamma         90 
_cell.entry_id            4XME 
_cell.length_a            38.887 
_cell.length_b            67.052 
_cell.length_c            39.082 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XME 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 5 1_555 A SG CYS 123 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 41 A CYS 42 1_555 A SG CYS 172 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A NE2 HIS 59 A HIS 60 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N NO . A NO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XME 
_atom_sites.fract_transf_matrix[1][1]    0.025716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0133 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014914 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 186 HEM HEM . 
C 3 NO A 1 202 187 NO NMO . 
D 4 GOL A 1 203 188 GOL GOL . 
E 5 HOH A 1 301 347 HOH HOH . 
E 5 HOH A 2 302 328 HOH HOH . 
E 5 HOH A 3 303 256 HOH HOH . 
E 5 HOH A 4 304 296 HOH HOH . 
E 5 HOH A 5 305 264 HOH HOH . 
E 5 HOH A 6 306 305 HOH HOH . 
E 5 HOH A 7 307 278 HOH HOH . 
E 5 HOH A 8 308 220 HOH HOH . 
E 5 HOH A 9 309 260 HOH HOH . 
E 5 HOH A 10 310 306 HOH HOH . 
E 5 HOH A 11 311 331 HOH HOH . 
E 5 HOH A 12 312 322 HOH HOH . 
E 5 HOH A 13 313 340 HOH HOH . 
E 5 HOH A 14 314 273 HOH HOH . 
E 5 HOH A 15 315 300 HOH HOH . 
E 5 HOH A 16 316 207 HOH HOH . 
E 5 HOH A 17 317 324 HOH HOH . 
E 5 HOH A 18 318 267 HOH HOH . 
E 5 HOH A 19 319 279 HOH HOH . 
E 5 HOH A 20 320 289 HOH HOH . 
E 5 HOH A 21 321 317 HOH HOH . 
E 5 HOH A 22 322 326 HOH HOH . 
E 5 HOH A 23 323 338 HOH HOH . 
E 5 HOH A 24 324 295 HOH HOH . 
E 5 HOH A 25 325 316 HOH HOH . 
E 5 HOH A 26 326 245 HOH HOH . 
E 5 HOH A 27 327 258 HOH HOH . 
E 5 HOH A 28 328 203 HOH HOH . 
E 5 HOH A 29 329 222 HOH HOH . 
E 5 HOH A 30 330 293 HOH HOH . 
E 5 HOH A 31 331 208 HOH HOH . 
E 5 HOH A 32 332 239 HOH HOH . 
E 5 HOH A 33 333 277 HOH HOH . 
E 5 HOH A 34 334 298 HOH HOH . 
E 5 HOH A 35 335 268 HOH HOH . 
E 5 HOH A 36 336 282 HOH HOH . 
E 5 HOH A 37 337 217 HOH HOH . 
E 5 HOH A 38 338 249 HOH HOH . 
E 5 HOH A 39 339 210 HOH HOH . 
E 5 HOH A 40 340 325 HOH HOH . 
E 5 HOH A 41 341 265 HOH HOH . 
E 5 HOH A 42 342 257 HOH HOH . 
E 5 HOH A 43 343 272 HOH HOH . 
E 5 HOH A 44 344 251 HOH HOH . 
E 5 HOH A 45 345 315 HOH HOH . 
E 5 HOH A 46 346 336 HOH HOH . 
E 5 HOH A 47 347 290 HOH HOH . 
E 5 HOH A 48 348 341 HOH HOH . 
E 5 HOH A 49 349 311 HOH HOH . 
E 5 HOH A 50 350 308 HOH HOH . 
E 5 HOH A 51 351 342 HOH HOH . 
E 5 HOH A 52 352 346 HOH HOH . 
E 5 HOH A 53 353 205 HOH HOH . 
E 5 HOH A 54 354 343 HOH HOH . 
E 5 HOH A 55 355 333 HOH HOH . 
E 5 HOH A 56 356 337 HOH HOH . 
E 5 HOH A 57 357 332 HOH HOH . 
E 5 HOH A 58 358 232 HOH HOH . 
E 5 HOH A 59 359 288 HOH HOH . 
E 5 HOH A 60 360 339 HOH HOH . 
E 5 HOH A 61 361 345 HOH HOH . 
E 5 HOH A 62 362 266 HOH HOH . 
E 5 HOH A 63 363 329 HOH HOH . 
E 5 HOH A 64 364 349 HOH HOH . 
E 5 HOH A 65 365 286 HOH HOH . 
E 5 HOH A 66 366 318 HOH HOH . 
E 5 HOH A 67 367 283 HOH HOH . 
E 5 HOH A 68 368 285 HOH HOH . 
E 5 HOH A 69 369 284 HOH HOH . 
E 5 HOH A 70 370 201 HOH HOH . 
E 5 HOH A 71 371 202 HOH HOH . 
E 5 HOH A 72 372 204 HOH HOH . 
E 5 HOH A 73 373 206 HOH HOH . 
E 5 HOH A 74 374 209 HOH HOH . 
E 5 HOH A 75 375 211 HOH HOH . 
E 5 HOH A 76 376 212 HOH HOH . 
E 5 HOH A 77 377 213 HOH HOH . 
E 5 HOH A 78 378 214 HOH HOH . 
E 5 HOH A 79 379 215 HOH HOH . 
E 5 HOH A 80 380 216 HOH HOH . 
E 5 HOH A 81 381 218 HOH HOH . 
E 5 HOH A 82 382 219 HOH HOH . 
E 5 HOH A 83 383 221 HOH HOH . 
E 5 HOH A 84 384 223 HOH HOH . 
E 5 HOH A 85 385 224 HOH HOH . 
E 5 HOH A 86 386 225 HOH HOH . 
E 5 HOH A 87 387 226 HOH HOH . 
E 5 HOH A 88 388 227 HOH HOH . 
E 5 HOH A 89 389 228 HOH HOH . 
E 5 HOH A 90 390 229 HOH HOH . 
E 5 HOH A 91 391 230 HOH HOH . 
E 5 HOH A 92 392 231 HOH HOH . 
E 5 HOH A 93 393 233 HOH HOH . 
E 5 HOH A 94 394 234 HOH HOH . 
E 5 HOH A 95 395 235 HOH HOH . 
E 5 HOH A 96 396 236 HOH HOH . 
E 5 HOH A 97 397 237 HOH HOH . 
E 5 HOH A 98 398 238 HOH HOH . 
E 5 HOH A 99 399 240 HOH HOH . 
E 5 HOH A 100 400 241 HOH HOH . 
E 5 HOH A 101 401 242 HOH HOH . 
E 5 HOH A 102 402 243 HOH HOH . 
E 5 HOH A 103 403 244 HOH HOH . 
E 5 HOH A 104 404 246 HOH HOH . 
E 5 HOH A 105 405 247 HOH HOH . 
E 5 HOH A 106 406 248 HOH HOH . 
E 5 HOH A 107 407 250 HOH HOH . 
E 5 HOH A 108 408 252 HOH HOH . 
E 5 HOH A 109 409 253 HOH HOH . 
E 5 HOH A 110 410 254 HOH HOH . 
E 5 HOH A 111 411 255 HOH HOH . 
E 5 HOH A 112 412 259 HOH HOH . 
E 5 HOH A 113 413 261 HOH HOH . 
E 5 HOH A 114 414 262 HOH HOH . 
E 5 HOH A 115 415 263 HOH HOH . 
E 5 HOH A 116 416 269 HOH HOH . 
E 5 HOH A 117 417 270 HOH HOH . 
E 5 HOH A 118 418 271 HOH HOH . 
E 5 HOH A 119 419 274 HOH HOH . 
E 5 HOH A 120 420 275 HOH HOH . 
E 5 HOH A 121 421 276 HOH HOH . 
E 5 HOH A 122 422 280 HOH HOH . 
E 5 HOH A 123 423 281 HOH HOH . 
E 5 HOH A 124 424 287 HOH HOH . 
E 5 HOH A 125 425 291 HOH HOH . 
E 5 HOH A 126 426 292 HOH HOH . 
E 5 HOH A 127 427 294 HOH HOH . 
E 5 HOH A 128 428 297 HOH HOH . 
E 5 HOH A 129 429 299 HOH HOH . 
E 5 HOH A 130 430 301 HOH HOH . 
E 5 HOH A 131 431 302 HOH HOH . 
E 5 HOH A 132 432 303 HOH HOH . 
E 5 HOH A 133 433 304 HOH HOH . 
E 5 HOH A 134 434 307 HOH HOH . 
E 5 HOH A 135 435 309 HOH HOH . 
E 5 HOH A 136 436 310 HOH HOH . 
E 5 HOH A 137 437 312 HOH HOH . 
E 5 HOH A 138 438 313 HOH HOH . 
E 5 HOH A 139 439 314 HOH HOH . 
E 5 HOH A 140 440 319 HOH HOH . 
E 5 HOH A 141 441 320 HOH HOH . 
E 5 HOH A 142 442 321 HOH HOH . 
E 5 HOH A 143 443 323 HOH HOH . 
E 5 HOH A 144 444 327 HOH HOH . 
E 5 HOH A 145 445 330 HOH HOH . 
E 5 HOH A 146 446 334 HOH HOH . 
E 5 HOH A 147 447 335 HOH HOH . 
E 5 HOH A 148 448 344 HOH HOH . 
E 5 HOH A 149 449 348 HOH HOH . 
E 5 HOH A 150 450 350 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 2.808 4.269 -3.474 1 35.75 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 4 3.195 5.04 -4.592 1 37.78 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 4 1.297 4.07 -3.488 1 33.51 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 4 0.678 5.216 -4.03 1 36.49 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 4 0.798 3.86 -2.066 1 27.13 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 4 0.764 2.487 -1.739 1 22.54 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#