data_4XMF
#
_model_server_result.job_id            QBRGicLXhWLas-FIjs31lQ 
_model_server_result.datetime_utc      '2024-11-22 22:00:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    4XMF 
#
_exptl.entry_id    4XMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              111.145 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HISTAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.87 
_cell.angle_gamma         90 
_cell.entry_id            4XMF 
_cell.length_a            38.338 
_cell.length_b            66.722 
_cell.length_c            38.825 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 5 1_555 A SG CYS 123 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 41 A CYS 42 1_555 A SG CYS 172 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 A NE2 HIS 59 A HIS 60 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 C NE2 HSM . A HSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C5 H9 N3' 
_chem_comp.formula_weight    111.145 
_chem_comp.id                HSM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HISTAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA HSM sing 234 n n 
N H1 HSM sing 235 n n 
N H2 HSM sing 236 n n 
CA CB HSM sing 237 n n 
CA HA1 HSM sing 238 n n 
CA HA2 HSM sing 239 n n 
CB CG HSM sing 240 n n 
CB HB1 HSM sing 241 n n 
CB HB2 HSM sing 242 n n 
CG ND1 HSM sing 243 n y 
CG CD2 HSM doub 244 n y 
ND1 CE1 HSM doub 245 n y 
CD2 NE2 HSM sing 246 n y 
CD2 HD2 HSM sing 247 n n 
CE1 NE2 HSM sing 248 n y 
CE1 HE1 HSM sing 249 n n 
NE2 HE2 HSM sing 250 n n 
#
_atom_sites.entry_id                     4XMF 
_atom_sites.fract_transf_matrix[1][1]    0.026084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.013214 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 186 HEM HEM . 
C 3 HSM A 1 202 187 HSM HSM . 
D 4 HOH A 1 301 271 HOH HOH . 
D 4 HOH A 2 302 264 HOH HOH . 
D 4 HOH A 3 303 278 HOH HOH . 
D 4 HOH A 4 304 241 HOH HOH . 
D 4 HOH A 5 305 247 HOH HOH . 
D 4 HOH A 6 306 314 HOH HOH . 
D 4 HOH A 7 307 298 HOH HOH . 
D 4 HOH A 8 308 254 HOH HOH . 
D 4 HOH A 9 309 301 HOH HOH . 
D 4 HOH A 10 310 286 HOH HOH . 
D 4 HOH A 11 311 260 HOH HOH . 
D 4 HOH A 12 312 240 HOH HOH . 
D 4 HOH A 13 313 235 HOH HOH . 
D 4 HOH A 14 314 276 HOH HOH . 
D 4 HOH A 15 315 273 HOH HOH . 
D 4 HOH A 16 316 221 HOH HOH . 
D 4 HOH A 17 317 282 HOH HOH . 
D 4 HOH A 18 318 228 HOH HOH . 
D 4 HOH A 19 319 268 HOH HOH . 
D 4 HOH A 20 320 218 HOH HOH . 
D 4 HOH A 21 321 296 HOH HOH . 
D 4 HOH A 22 322 216 HOH HOH . 
D 4 HOH A 23 323 323 HOH HOH . 
D 4 HOH A 24 324 219 HOH HOH . 
D 4 HOH A 25 325 202 HOH HOH . 
D 4 HOH A 26 326 310 HOH HOH . 
D 4 HOH A 27 327 222 HOH HOH . 
D 4 HOH A 28 328 307 HOH HOH . 
D 4 HOH A 29 329 226 HOH HOH . 
D 4 HOH A 30 330 242 HOH HOH . 
D 4 HOH A 31 331 274 HOH HOH . 
D 4 HOH A 32 332 225 HOH HOH . 
D 4 HOH A 33 333 292 HOH HOH . 
D 4 HOH A 34 334 244 HOH HOH . 
D 4 HOH A 35 335 238 HOH HOH . 
D 4 HOH A 36 336 265 HOH HOH . 
D 4 HOH A 37 337 239 HOH HOH . 
D 4 HOH A 38 338 311 HOH HOH . 
D 4 HOH A 39 339 267 HOH HOH . 
D 4 HOH A 40 340 205 HOH HOH . 
D 4 HOH A 41 341 326 HOH HOH . 
D 4 HOH A 42 342 266 HOH HOH . 
D 4 HOH A 43 343 324 HOH HOH . 
D 4 HOH A 44 344 283 HOH HOH . 
D 4 HOH A 45 345 270 HOH HOH . 
D 4 HOH A 46 346 272 HOH HOH . 
D 4 HOH A 47 347 313 HOH HOH . 
D 4 HOH A 48 348 291 HOH HOH . 
D 4 HOH A 49 349 287 HOH HOH . 
D 4 HOH A 50 350 262 HOH HOH . 
D 4 HOH A 51 351 289 HOH HOH . 
D 4 HOH A 52 352 319 HOH HOH . 
D 4 HOH A 53 353 217 HOH HOH . 
D 4 HOH A 54 354 201 HOH HOH . 
D 4 HOH A 55 355 203 HOH HOH . 
D 4 HOH A 56 356 204 HOH HOH . 
D 4 HOH A 57 357 206 HOH HOH . 
D 4 HOH A 58 358 207 HOH HOH . 
D 4 HOH A 59 359 208 HOH HOH . 
D 4 HOH A 60 360 209 HOH HOH . 
D 4 HOH A 61 361 210 HOH HOH . 
D 4 HOH A 62 362 211 HOH HOH . 
D 4 HOH A 63 363 212 HOH HOH . 
D 4 HOH A 64 364 213 HOH HOH . 
D 4 HOH A 65 365 214 HOH HOH . 
D 4 HOH A 66 366 215 HOH HOH . 
D 4 HOH A 67 367 220 HOH HOH . 
D 4 HOH A 68 368 223 HOH HOH . 
D 4 HOH A 69 369 224 HOH HOH . 
D 4 HOH A 70 370 227 HOH HOH . 
D 4 HOH A 71 371 229 HOH HOH . 
D 4 HOH A 72 372 230 HOH HOH . 
D 4 HOH A 73 373 231 HOH HOH . 
D 4 HOH A 74 374 232 HOH HOH . 
D 4 HOH A 75 375 233 HOH HOH . 
D 4 HOH A 76 376 234 HOH HOH . 
D 4 HOH A 77 377 236 HOH HOH . 
D 4 HOH A 78 378 237 HOH HOH . 
D 4 HOH A 79 379 243 HOH HOH . 
D 4 HOH A 80 380 245 HOH HOH . 
D 4 HOH A 81 381 246 HOH HOH . 
D 4 HOH A 82 382 248 HOH HOH . 
D 4 HOH A 83 383 249 HOH HOH . 
D 4 HOH A 84 384 250 HOH HOH . 
D 4 HOH A 85 385 251 HOH HOH . 
D 4 HOH A 86 386 252 HOH HOH . 
D 4 HOH A 87 387 253 HOH HOH . 
D 4 HOH A 88 388 255 HOH HOH . 
D 4 HOH A 89 389 256 HOH HOH . 
D 4 HOH A 90 390 257 HOH HOH . 
D 4 HOH A 91 391 258 HOH HOH . 
D 4 HOH A 92 392 259 HOH HOH . 
D 4 HOH A 93 393 261 HOH HOH . 
D 4 HOH A 94 394 263 HOH HOH . 
D 4 HOH A 95 395 269 HOH HOH . 
D 4 HOH A 96 396 275 HOH HOH . 
D 4 HOH A 97 397 277 HOH HOH . 
D 4 HOH A 98 398 279 HOH HOH . 
D 4 HOH A 99 399 280 HOH HOH . 
D 4 HOH A 100 400 281 HOH HOH . 
D 4 HOH A 101 401 284 HOH HOH . 
D 4 HOH A 102 402 285 HOH HOH . 
D 4 HOH A 103 403 288 HOH HOH . 
D 4 HOH A 104 404 290 HOH HOH . 
D 4 HOH A 105 405 293 HOH HOH . 
D 4 HOH A 106 406 294 HOH HOH . 
D 4 HOH A 107 407 295 HOH HOH . 
D 4 HOH A 108 408 297 HOH HOH . 
D 4 HOH A 109 409 299 HOH HOH . 
D 4 HOH A 110 410 300 HOH HOH . 
D 4 HOH A 111 411 302 HOH HOH . 
D 4 HOH A 112 412 303 HOH HOH . 
D 4 HOH A 113 413 304 HOH HOH . 
D 4 HOH A 114 414 305 HOH HOH . 
D 4 HOH A 115 415 306 HOH HOH . 
D 4 HOH A 116 416 308 HOH HOH . 
D 4 HOH A 117 417 309 HOH HOH . 
D 4 HOH A 118 418 312 HOH HOH . 
D 4 HOH A 119 419 315 HOH HOH . 
D 4 HOH A 120 420 316 HOH HOH . 
D 4 HOH A 121 421 317 HOH HOH . 
D 4 HOH A 122 422 318 HOH HOH . 
D 4 HOH A 123 423 320 HOH HOH . 
D 4 HOH A 124 424 321 HOH HOH . 
D 4 HOH A 125 425 322 HOH HOH . 
D 4 HOH A 126 426 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N HSM . . . C 3 6.859 -9.272 16.55 0.68 34.8 ? N HSM 202 A 1 
HETATM 2 C CA HSM . . . C 3 6.401 -8.833 15.304 0.68 31.96 ? CA HSM 202 A 1 
HETATM 3 C CB HSM . . . C 3 7.273 -9.143 14.101 0.68 29.3 ? CB HSM 202 A 1 
HETATM 4 C CG HSM . . . C 3 7.03 -8.341 12.892 0.68 29.97 ? CG HSM 202 A 1 
HETATM 5 N ND1 HSM . . . C 3 6.159 -7.336 12.741 0.68 30.52 ? ND1 HSM 202 A 1 
HETATM 6 C CD2 HSM . . . C 3 7.682 -8.504 11.647 0.68 28.75 ? CD2 HSM 202 A 1 
HETATM 7 C CE1 HSM . . . C 3 6.251 -6.878 11.485 0.68 29.64 ? CE1 HSM 202 A 1 
HETATM 8 N NE2 HSM . . . C 3 7.192 -7.605 10.817 0.68 27.42 ? NE2 HSM 202 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#