data_4XMG # _model_server_result.job_id ZiIFWw2L9Gd-CAbzZ0fdfA _model_server_result.datetime_utc '2024-11-26 17:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4XMG # _exptl.entry_id 4XMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.5 _cell.angle_gamma 90 _cell.entry_id 4XMG _cell.length_a 38.264 _cell.length_b 66.747 _cell.length_c 38.561 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 5 1_555 A SG CYS 123 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 41 A CYS 42 1_555 A SG CYS 172 A CYS 173 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 59 A HIS 60 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N1 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 255 n y N1 C5 IMD sing 256 n y N1 HN1 IMD sing 257 n n C2 N3 IMD doub 258 n y C2 H2 IMD sing 259 n n N3 C4 IMD sing 260 n y N3 HN3 IMD sing 261 n n C4 C5 IMD doub 262 n y C4 H4 IMD sing 263 n n C5 H5 IMD sing 264 n n # _atom_sites.entry_id 4XMG _atom_sites.fract_transf_matrix[1][1] 0.026134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 186 HEM HEM . C 3 IMD A 1 202 187 IMD IMD . D 4 HOH A 1 301 298 HOH HOH . D 4 HOH A 2 302 297 HOH HOH . D 4 HOH A 3 303 255 HOH HOH . D 4 HOH A 4 304 227 HOH HOH . D 4 HOH A 5 305 301 HOH HOH . D 4 HOH A 6 306 261 HOH HOH . D 4 HOH A 7 307 253 HOH HOH . D 4 HOH A 8 308 311 HOH HOH . D 4 HOH A 9 309 289 HOH HOH . D 4 HOH A 10 310 254 HOH HOH . D 4 HOH A 11 311 295 HOH HOH . D 4 HOH A 12 312 273 HOH HOH . D 4 HOH A 13 313 231 HOH HOH . D 4 HOH A 14 314 319 HOH HOH . D 4 HOH A 15 315 283 HOH HOH . D 4 HOH A 16 316 305 HOH HOH . D 4 HOH A 17 317 280 HOH HOH . D 4 HOH A 18 318 245 HOH HOH . D 4 HOH A 19 319 222 HOH HOH . D 4 HOH A 20 320 268 HOH HOH . D 4 HOH A 21 321 277 HOH HOH . D 4 HOH A 22 322 309 HOH HOH . D 4 HOH A 23 323 242 HOH HOH . D 4 HOH A 24 324 228 HOH HOH . D 4 HOH A 25 325 281 HOH HOH . D 4 HOH A 26 326 206 HOH HOH . D 4 HOH A 27 327 220 HOH HOH . D 4 HOH A 28 328 286 HOH HOH . D 4 HOH A 29 329 204 HOH HOH . D 4 HOH A 30 330 252 HOH HOH . D 4 HOH A 31 331 303 HOH HOH . D 4 HOH A 32 332 238 HOH HOH . D 4 HOH A 33 333 274 HOH HOH . D 4 HOH A 34 334 210 HOH HOH . D 4 HOH A 35 335 278 HOH HOH . D 4 HOH A 36 336 306 HOH HOH . D 4 HOH A 37 337 285 HOH HOH . D 4 HOH A 38 338 315 HOH HOH . D 4 HOH A 39 339 310 HOH HOH . D 4 HOH A 40 340 241 HOH HOH . D 4 HOH A 41 341 265 HOH HOH . D 4 HOH A 42 342 294 HOH HOH . D 4 HOH A 43 343 230 HOH HOH . D 4 HOH A 44 344 307 HOH HOH . D 4 HOH A 45 345 237 HOH HOH . D 4 HOH A 46 346 267 HOH HOH . D 4 HOH A 47 347 205 HOH HOH . D 4 HOH A 48 348 299 HOH HOH . D 4 HOH A 49 349 318 HOH HOH . D 4 HOH A 50 350 317 HOH HOH . D 4 HOH A 51 351 292 HOH HOH . D 4 HOH A 52 352 215 HOH HOH . D 4 HOH A 53 353 201 HOH HOH . D 4 HOH A 54 354 202 HOH HOH . D 4 HOH A 55 355 203 HOH HOH . D 4 HOH A 56 356 207 HOH HOH . D 4 HOH A 57 357 208 HOH HOH . D 4 HOH A 58 358 209 HOH HOH . D 4 HOH A 59 359 211 HOH HOH . D 4 HOH A 60 360 212 HOH HOH . D 4 HOH A 61 361 213 HOH HOH . D 4 HOH A 62 362 214 HOH HOH . D 4 HOH A 63 363 216 HOH HOH . D 4 HOH A 64 364 217 HOH HOH . D 4 HOH A 65 365 218 HOH HOH . D 4 HOH A 66 366 219 HOH HOH . D 4 HOH A 67 367 221 HOH HOH . D 4 HOH A 68 368 223 HOH HOH . D 4 HOH A 69 369 224 HOH HOH . D 4 HOH A 70 370 225 HOH HOH . D 4 HOH A 71 371 226 HOH HOH . D 4 HOH A 72 372 229 HOH HOH . D 4 HOH A 73 373 232 HOH HOH . D 4 HOH A 74 374 233 HOH HOH . D 4 HOH A 75 375 234 HOH HOH . D 4 HOH A 76 376 235 HOH HOH . D 4 HOH A 77 377 236 HOH HOH . D 4 HOH A 78 378 239 HOH HOH . D 4 HOH A 79 379 240 HOH HOH . D 4 HOH A 80 380 243 HOH HOH . D 4 HOH A 81 381 244 HOH HOH . D 4 HOH A 82 382 246 HOH HOH . D 4 HOH A 83 383 247 HOH HOH . D 4 HOH A 84 384 248 HOH HOH . D 4 HOH A 85 385 249 HOH HOH . D 4 HOH A 86 386 250 HOH HOH . D 4 HOH A 87 387 251 HOH HOH . D 4 HOH A 88 388 256 HOH HOH . D 4 HOH A 89 389 257 HOH HOH . D 4 HOH A 90 390 258 HOH HOH . D 4 HOH A 91 391 259 HOH HOH . D 4 HOH A 92 392 260 HOH HOH . D 4 HOH A 93 393 262 HOH HOH . D 4 HOH A 94 394 263 HOH HOH . D 4 HOH A 95 395 264 HOH HOH . D 4 HOH A 96 396 266 HOH HOH . D 4 HOH A 97 397 269 HOH HOH . D 4 HOH A 98 398 270 HOH HOH . D 4 HOH A 99 399 271 HOH HOH . D 4 HOH A 100 400 272 HOH HOH . D 4 HOH A 101 401 275 HOH HOH . D 4 HOH A 102 402 276 HOH HOH . D 4 HOH A 103 403 279 HOH HOH . D 4 HOH A 104 404 282 HOH HOH . D 4 HOH A 105 405 284 HOH HOH . D 4 HOH A 106 406 287 HOH HOH . D 4 HOH A 107 407 288 HOH HOH . D 4 HOH A 108 408 290 HOH HOH . D 4 HOH A 109 409 291 HOH HOH . D 4 HOH A 110 410 293 HOH HOH . D 4 HOH A 111 411 296 HOH HOH . D 4 HOH A 112 412 300 HOH HOH . D 4 HOH A 113 413 302 HOH HOH . D 4 HOH A 114 414 304 HOH HOH . D 4 HOH A 115 415 308 HOH HOH . D 4 HOH A 116 416 312 HOH HOH . D 4 HOH A 117 417 313 HOH HOH . D 4 HOH A 118 418 314 HOH HOH . D 4 HOH A 119 419 316 HOH HOH . D 4 HOH A 120 420 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 6.964 -6.744 11.352 1 20.27 ? N1 IMD 202 A 1 HETATM 2 C C2 IMD . . . C 3 7.278 -7.72 12.225 1 22.04 ? C2 IMD 202 A 1 HETATM 3 N N3 IMD . . . C 3 6.715 -7.419 13.426 1 21.35 ? N3 IMD 202 A 1 HETATM 4 C C4 IMD . . . C 3 6.05 -6.251 13.305 1 22.41 ? C4 IMD 202 A 1 HETATM 5 C C5 IMD . . . C 3 6.214 -5.815 11.991 1 23.25 ? C5 IMD 202 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #