data_4XMV # _model_server_result.job_id KXOeAh-TWldqKMSFv5hmyg _model_server_result.datetime_utc '2024-11-06 16:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 4XMV # _exptl.entry_id 4XMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XMV _cell.length_a 120.812 _cell.length_b 120.812 _cell.length_c 170.279 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 15 A GLN 19 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A O ILE 16 A ILE 20 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc3 A O LEU 134 A LEU 138 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A O MET 230 A MET 234 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc5 A O LEU 239 A LEU 243 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc6 A NE2 HIS 293 A HIS 297 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc7 A OH TYR 295 A TYR 299 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc8 A NE2 HIS 297 A HIS 301 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc9 A OE1 GLU 316 A GLU 320 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 A O SER 328 A SER 332 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc11 A O GLY 331 A GLY 335 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc12 B ZN ZN . A ZN 901 1_555 C OXT ARG . A ARG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc13 D NA NA . A NA 903 1_555 T O HOH . A HOH 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc14 D NA NA . A NA 903 1_555 T O HOH . A HOH 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc15 E NA NA . A NA 904 1_555 T O HOH . A HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc16 F NA NA . A NA 905 1_555 T O HOH . A HOH 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XMV _atom_sites.fract_transf_matrix[1][1] 0.008277 _atom_sites.fract_transf_matrix[1][2] 0.004779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 871 ZN ZN . C 3 ARG A 1 902 872 ARG ARG . D 4 NA A 1 903 873 NA NA . E 4 NA A 1 904 874 NA NA . F 4 NA A 1 905 875 NA NA . G 5 GOL A 1 906 876 GOL GOL . H 5 GOL A 1 907 877 GOL GOL . I 5 GOL A 1 908 878 GOL GOL . J 5 GOL A 1 909 879 GOL GOL . K 5 GOL A 1 910 880 GOL GOL . L 5 GOL A 1 911 881 GOL GOL . M 5 GOL A 1 912 882 GOL GOL . N 5 GOL A 1 913 883 GOL GOL . O 5 GOL A 1 914 884 GOL GOL . P 5 GOL A 1 915 885 GOL GOL . Q 5 GOL A 1 916 886 GOL GOL . R 6 MLI A 1 917 887 MLI MLI . S 6 MLI A 1 918 888 MLI MLI . T 7 HOH A 1 1001 983 HOH HOH . T 7 HOH A 2 1002 978 HOH HOH . T 7 HOH A 3 1003 960 HOH HOH . T 7 HOH A 4 1004 1038 HOH HOH . T 7 HOH A 5 1005 917 HOH HOH . T 7 HOH A 6 1006 1048 HOH HOH . T 7 HOH A 7 1007 914 HOH HOH . T 7 HOH A 8 1008 890 HOH HOH . T 7 HOH A 9 1009 1099 HOH HOH . T 7 HOH A 10 1010 969 HOH HOH . T 7 HOH A 11 1011 1070 HOH HOH . T 7 HOH A 12 1012 986 HOH HOH . T 7 HOH A 13 1013 899 HOH HOH . T 7 HOH A 14 1014 959 HOH HOH . T 7 HOH A 15 1015 991 HOH HOH . T 7 HOH A 16 1016 892 HOH HOH . T 7 HOH A 17 1017 953 HOH HOH . T 7 HOH A 18 1018 938 HOH HOH . T 7 HOH A 19 1019 893 HOH HOH . T 7 HOH A 20 1020 993 HOH HOH . T 7 HOH A 21 1021 908 HOH HOH . T 7 HOH A 22 1022 975 HOH HOH . T 7 HOH A 23 1023 911 HOH HOH . T 7 HOH A 24 1024 956 HOH HOH . T 7 HOH A 25 1025 1084 HOH HOH . T 7 HOH A 26 1026 889 HOH HOH . T 7 HOH A 27 1027 961 HOH HOH . T 7 HOH A 28 1028 952 HOH HOH . T 7 HOH A 29 1029 918 HOH HOH . T 7 HOH A 30 1030 974 HOH HOH . T 7 HOH A 31 1031 1000 HOH HOH . T 7 HOH A 32 1032 943 HOH HOH . T 7 HOH A 33 1033 947 HOH HOH . T 7 HOH A 34 1034 898 HOH HOH . T 7 HOH A 35 1035 903 HOH HOH . T 7 HOH A 36 1036 966 HOH HOH . T 7 HOH A 37 1037 1032 HOH HOH . T 7 HOH A 38 1038 1058 HOH HOH . T 7 HOH A 39 1039 936 HOH HOH . T 7 HOH A 40 1040 955 HOH HOH . T 7 HOH A 41 1041 951 HOH HOH . T 7 HOH A 42 1042 902 HOH HOH . T 7 HOH A 43 1043 909 HOH HOH . T 7 HOH A 44 1044 922 HOH HOH . T 7 HOH A 45 1045 1011 HOH HOH . T 7 HOH A 46 1046 896 HOH HOH . T 7 HOH A 47 1047 967 HOH HOH . T 7 HOH A 48 1048 923 HOH HOH . T 7 HOH A 49 1049 939 HOH HOH . T 7 HOH A 50 1050 1022 HOH HOH . T 7 HOH A 51 1051 1075 HOH HOH . T 7 HOH A 52 1052 1044 HOH HOH . T 7 HOH A 53 1053 999 HOH HOH . T 7 HOH A 54 1054 1098 HOH HOH . T 7 HOH A 55 1055 933 HOH HOH . T 7 HOH A 56 1056 895 HOH HOH . T 7 HOH A 57 1057 957 HOH HOH . T 7 HOH A 58 1058 985 HOH HOH . T 7 HOH A 59 1059 907 HOH HOH . T 7 HOH A 60 1060 970 HOH HOH . T 7 HOH A 61 1061 919 HOH HOH . T 7 HOH A 62 1062 942 HOH HOH . T 7 HOH A 63 1063 940 HOH HOH . T 7 HOH A 64 1064 894 HOH HOH . T 7 HOH A 65 1065 904 HOH HOH . T 7 HOH A 66 1066 984 HOH HOH . T 7 HOH A 67 1067 949 HOH HOH . T 7 HOH A 68 1068 941 HOH HOH . T 7 HOH A 69 1069 989 HOH HOH . T 7 HOH A 70 1070 1008 HOH HOH . T 7 HOH A 71 1071 968 HOH HOH . T 7 HOH A 72 1072 1072 HOH HOH . T 7 HOH A 73 1073 981 HOH HOH . T 7 HOH A 74 1074 1062 HOH HOH . T 7 HOH A 75 1075 1036 HOH HOH . T 7 HOH A 76 1076 954 HOH HOH . T 7 HOH A 77 1077 901 HOH HOH . T 7 HOH A 78 1078 962 HOH HOH . T 7 HOH A 79 1079 980 HOH HOH . T 7 HOH A 80 1080 900 HOH HOH . T 7 HOH A 81 1081 910 HOH HOH . T 7 HOH A 82 1082 1108 HOH HOH . T 7 HOH A 83 1083 1069 HOH HOH . T 7 HOH A 84 1084 982 HOH HOH . T 7 HOH A 85 1085 1020 HOH HOH . T 7 HOH A 86 1086 1111 HOH HOH . T 7 HOH A 87 1087 971 HOH HOH . T 7 HOH A 88 1088 944 HOH HOH . T 7 HOH A 89 1089 950 HOH HOH . T 7 HOH A 90 1090 1085 HOH HOH . T 7 HOH A 91 1091 928 HOH HOH . T 7 HOH A 92 1092 929 HOH HOH . T 7 HOH A 93 1093 1092 HOH HOH . T 7 HOH A 94 1094 915 HOH HOH . T 7 HOH A 95 1095 1030 HOH HOH . T 7 HOH A 96 1096 1019 HOH HOH . T 7 HOH A 97 1097 1005 HOH HOH . T 7 HOH A 98 1098 916 HOH HOH . T 7 HOH A 99 1099 912 HOH HOH . T 7 HOH A 100 1100 937 HOH HOH . T 7 HOH A 101 1101 924 HOH HOH . T 7 HOH A 102 1102 1078 HOH HOH . T 7 HOH A 103 1103 906 HOH HOH . T 7 HOH A 104 1104 945 HOH HOH . T 7 HOH A 105 1105 913 HOH HOH . T 7 HOH A 106 1106 1059 HOH HOH . T 7 HOH A 107 1107 1080 HOH HOH . T 7 HOH A 108 1108 927 HOH HOH . T 7 HOH A 109 1109 921 HOH HOH . T 7 HOH A 110 1110 920 HOH HOH . T 7 HOH A 111 1111 1087 HOH HOH . T 7 HOH A 112 1112 935 HOH HOH . T 7 HOH A 113 1113 1097 HOH HOH . T 7 HOH A 114 1114 976 HOH HOH . T 7 HOH A 115 1115 998 HOH HOH . T 7 HOH A 116 1116 930 HOH HOH . T 7 HOH A 117 1117 1042 HOH HOH . T 7 HOH A 118 1118 1046 HOH HOH . T 7 HOH A 119 1119 926 HOH HOH . T 7 HOH A 120 1120 1089 HOH HOH . T 7 HOH A 121 1121 1096 HOH HOH . T 7 HOH A 122 1122 1015 HOH HOH . T 7 HOH A 123 1123 905 HOH HOH . T 7 HOH A 124 1124 1003 HOH HOH . T 7 HOH A 125 1125 931 HOH HOH . T 7 HOH A 126 1126 1031 HOH HOH . T 7 HOH A 127 1127 1071 HOH HOH . T 7 HOH A 128 1128 1065 HOH HOH . T 7 HOH A 129 1129 1057 HOH HOH . T 7 HOH A 130 1130 1110 HOH HOH . T 7 HOH A 131 1131 1064 HOH HOH . T 7 HOH A 132 1132 1004 HOH HOH . T 7 HOH A 133 1133 1010 HOH HOH . T 7 HOH A 134 1134 891 HOH HOH . T 7 HOH A 135 1135 1049 HOH HOH . T 7 HOH A 136 1136 973 HOH HOH . T 7 HOH A 137 1137 1077 HOH HOH . T 7 HOH A 138 1138 1051 HOH HOH . T 7 HOH A 139 1139 897 HOH HOH . T 7 HOH A 140 1140 946 HOH HOH . T 7 HOH A 141 1141 990 HOH HOH . T 7 HOH A 142 1142 1054 HOH HOH . T 7 HOH A 143 1143 1095 HOH HOH . T 7 HOH A 144 1144 1104 HOH HOH . T 7 HOH A 145 1145 965 HOH HOH . T 7 HOH A 146 1146 948 HOH HOH . T 7 HOH A 147 1147 1040 HOH HOH . T 7 HOH A 148 1148 1093 HOH HOH . T 7 HOH A 149 1149 1026 HOH HOH . T 7 HOH A 150 1150 979 HOH HOH . T 7 HOH A 151 1151 1076 HOH HOH . T 7 HOH A 152 1152 925 HOH HOH . T 7 HOH A 153 1153 1113 HOH HOH . T 7 HOH A 154 1154 1060 HOH HOH . T 7 HOH A 155 1155 958 HOH HOH . T 7 HOH A 156 1156 1006 HOH HOH . T 7 HOH A 157 1157 988 HOH HOH . T 7 HOH A 158 1158 1086 HOH HOH . T 7 HOH A 159 1159 1045 HOH HOH . T 7 HOH A 160 1160 964 HOH HOH . T 7 HOH A 161 1161 1079 HOH HOH . T 7 HOH A 162 1162 1007 HOH HOH . T 7 HOH A 163 1163 1094 HOH HOH . T 7 HOH A 164 1164 1041 HOH HOH . T 7 HOH A 165 1165 934 HOH HOH . T 7 HOH A 166 1166 1047 HOH HOH . T 7 HOH A 167 1167 1024 HOH HOH . T 7 HOH A 168 1168 1061 HOH HOH . T 7 HOH A 169 1169 1034 HOH HOH . T 7 HOH A 170 1170 987 HOH HOH . T 7 HOH A 171 1171 1043 HOH HOH . T 7 HOH A 172 1172 932 HOH HOH . T 7 HOH A 173 1173 1039 HOH HOH . T 7 HOH A 174 1174 1056 HOH HOH . T 7 HOH A 175 1175 1068 HOH HOH . T 7 HOH A 176 1176 1025 HOH HOH . T 7 HOH A 177 1177 1053 HOH HOH . T 7 HOH A 178 1178 1088 HOH HOH . T 7 HOH A 179 1179 1101 HOH HOH . T 7 HOH A 180 1180 1029 HOH HOH . T 7 HOH A 181 1181 1090 HOH HOH . T 7 HOH A 182 1182 994 HOH HOH . T 7 HOH A 183 1183 972 HOH HOH . T 7 HOH A 184 1184 1028 HOH HOH . T 7 HOH A 185 1185 997 HOH HOH . T 7 HOH A 186 1186 1109 HOH HOH . T 7 HOH A 187 1187 1021 HOH HOH . T 7 HOH A 188 1188 1037 HOH HOH . T 7 HOH A 189 1189 1002 HOH HOH . T 7 HOH A 190 1190 996 HOH HOH . T 7 HOH A 191 1191 1055 HOH HOH . T 7 HOH A 192 1192 1016 HOH HOH . T 7 HOH A 193 1193 1073 HOH HOH . T 7 HOH A 194 1194 1105 HOH HOH . T 7 HOH A 195 1195 1035 HOH HOH . T 7 HOH A 196 1196 1009 HOH HOH . T 7 HOH A 197 1197 963 HOH HOH . T 7 HOH A 198 1198 1012 HOH HOH . T 7 HOH A 199 1199 1013 HOH HOH . T 7 HOH A 200 1200 1091 HOH HOH . T 7 HOH A 201 1201 977 HOH HOH . T 7 HOH A 202 1202 1001 HOH HOH . T 7 HOH A 203 1203 1067 HOH HOH . T 7 HOH A 204 1204 1052 HOH HOH . T 7 HOH A 205 1205 992 HOH HOH . T 7 HOH A 206 1206 1082 HOH HOH . T 7 HOH A 207 1207 1023 HOH HOH . T 7 HOH A 208 1208 995 HOH HOH . T 7 HOH A 209 1209 1074 HOH HOH . T 7 HOH A 210 1210 1081 HOH HOH . T 7 HOH A 211 1211 1103 HOH HOH . T 7 HOH A 212 1212 1112 HOH HOH . T 7 HOH A 213 1213 1050 HOH HOH . T 7 HOH A 214 1214 1017 HOH HOH . T 7 HOH A 215 1215 1063 HOH HOH . T 7 HOH A 216 1216 1027 HOH HOH . T 7 HOH A 217 1217 1102 HOH HOH . T 7 HOH A 218 1218 1033 HOH HOH . T 7 HOH A 219 1219 1066 HOH HOH . T 7 HOH A 220 1220 1018 HOH HOH . T 7 HOH A 221 1221 1107 HOH HOH . T 7 HOH A 222 1222 1083 HOH HOH . T 7 HOH A 223 1223 1014 HOH HOH . T 7 HOH A 224 1224 1106 HOH HOH . T 7 HOH A 225 1225 1100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 51.852 _atom_site.Cartn_y -7.86 _atom_site.Cartn_z 10.554 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #