data_4XN6 # _model_server_result.job_id EkcHEuk6cFWWNYNu1ccTqw _model_server_result.datetime_utc '2024-11-08 13:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4XN6 # _exptl.entry_id 4XN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XN6 _cell.length_a 79.292 _cell.length_b 79.292 _cell.length_c 38.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XN6 _atom_sites.fract_transf_matrix[1][1] 0.012612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 201 1 BEN BAM . C 3 HOH A 1 301 62 HOH HOH . C 3 HOH A 2 302 70 HOH HOH . C 3 HOH A 3 303 43 HOH HOH . C 3 HOH A 4 304 42 HOH HOH . C 3 HOH A 5 305 87 HOH HOH . C 3 HOH A 6 306 51 HOH HOH . C 3 HOH A 7 307 15 HOH HOH . C 3 HOH A 8 308 2 HOH HOH . C 3 HOH A 9 309 60 HOH HOH . C 3 HOH A 10 310 35 HOH HOH . C 3 HOH A 11 311 50 HOH HOH . C 3 HOH A 12 312 44 HOH HOH . C 3 HOH A 13 313 82 HOH HOH . C 3 HOH A 14 314 73 HOH HOH . C 3 HOH A 15 315 53 HOH HOH . C 3 HOH A 16 316 8 HOH HOH . C 3 HOH A 17 317 23 HOH HOH . C 3 HOH A 18 318 106 HOH HOH . C 3 HOH A 19 319 25 HOH HOH . C 3 HOH A 20 320 24 HOH HOH . C 3 HOH A 21 321 26 HOH HOH . C 3 HOH A 22 322 67 HOH HOH . C 3 HOH A 23 323 54 HOH HOH . C 3 HOH A 24 324 39 HOH HOH . C 3 HOH A 25 325 46 HOH HOH . C 3 HOH A 26 326 93 HOH HOH . C 3 HOH A 27 327 79 HOH HOH . C 3 HOH A 28 328 61 HOH HOH . C 3 HOH A 29 329 28 HOH HOH . C 3 HOH A 30 330 45 HOH HOH . C 3 HOH A 31 331 97 HOH HOH . C 3 HOH A 32 332 56 HOH HOH . C 3 HOH A 33 333 38 HOH HOH . C 3 HOH A 34 334 64 HOH HOH . C 3 HOH A 35 335 18 HOH HOH . C 3 HOH A 36 336 48 HOH HOH . C 3 HOH A 37 337 12 HOH HOH . C 3 HOH A 38 338 16 HOH HOH . C 3 HOH A 39 339 105 HOH HOH . C 3 HOH A 40 340 30 HOH HOH . C 3 HOH A 41 341 86 HOH HOH . C 3 HOH A 42 342 4 HOH HOH . C 3 HOH A 43 343 5 HOH HOH . C 3 HOH A 44 344 66 HOH HOH . C 3 HOH A 45 345 65 HOH HOH . C 3 HOH A 46 346 27 HOH HOH . C 3 HOH A 47 347 13 HOH HOH . C 3 HOH A 48 348 10 HOH HOH . C 3 HOH A 49 349 98 HOH HOH . C 3 HOH A 50 350 103 HOH HOH . C 3 HOH A 51 351 20 HOH HOH . C 3 HOH A 52 352 6 HOH HOH . C 3 HOH A 53 353 17 HOH HOH . C 3 HOH A 54 354 90 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 47 HOH HOH . C 3 HOH A 57 357 88 HOH HOH . C 3 HOH A 58 358 11 HOH HOH . C 3 HOH A 59 359 19 HOH HOH . C 3 HOH A 60 360 21 HOH HOH . C 3 HOH A 61 361 14 HOH HOH . C 3 HOH A 62 362 29 HOH HOH . C 3 HOH A 63 363 9 HOH HOH . C 3 HOH A 64 364 3 HOH HOH . C 3 HOH A 65 365 99 HOH HOH . C 3 HOH A 66 366 52 HOH HOH . C 3 HOH A 67 367 22 HOH HOH . C 3 HOH A 68 368 94 HOH HOH . C 3 HOH A 69 369 100 HOH HOH . C 3 HOH A 70 370 59 HOH HOH . C 3 HOH A 71 371 95 HOH HOH . C 3 HOH A 72 372 80 HOH HOH . C 3 HOH A 73 373 101 HOH HOH . C 3 HOH A 74 374 7 HOH HOH . C 3 HOH A 75 375 40 HOH HOH . C 3 HOH A 76 376 49 HOH HOH . C 3 HOH A 77 377 104 HOH HOH . C 3 HOH A 78 378 91 HOH HOH . C 3 HOH A 79 379 57 HOH HOH . C 3 HOH A 80 380 1 HOH HOH . C 3 HOH A 81 381 76 HOH HOH . C 3 HOH A 82 382 71 HOH HOH . C 3 HOH A 83 383 102 HOH HOH . C 3 HOH A 84 384 69 HOH HOH . C 3 HOH A 85 385 89 HOH HOH . C 3 HOH A 86 386 68 HOH HOH . C 3 HOH A 87 387 58 HOH HOH . C 3 HOH A 88 388 34 HOH HOH . C 3 HOH A 89 389 36 HOH HOH . C 3 HOH A 90 390 92 HOH HOH . C 3 HOH A 91 391 33 HOH HOH . C 3 HOH A 92 392 31 HOH HOH . C 3 HOH A 93 393 32 HOH HOH . C 3 HOH A 94 394 41 HOH HOH . C 3 HOH A 95 395 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 23.895 8.103 28.378 0.7 17.47 ? C1 BEN 201 A 1 HETATM 2 C C2 BEN . . . B 2 24.061 7.801 27.026 0.7 18.9 ? C2 BEN 201 A 1 HETATM 3 C C3 BEN . . . B 2 23.247 8.394 26.066 0.7 19.29 ? C3 BEN 201 A 1 HETATM 4 C C4 BEN . . . B 2 22.271 9.302 26.459 0.7 20.39 ? C4 BEN 201 A 1 HETATM 5 C C5 BEN . . . B 2 22.104 9.608 27.801 0.7 20.16 ? C5 BEN 201 A 1 HETATM 6 C C6 BEN . . . B 2 22.911 9.017 28.763 0.7 19.73 ? C6 BEN 201 A 1 HETATM 7 C C BEN . . . B 2 24.72 7.495 29.33 0.7 18.12 ? C BEN 201 A 1 HETATM 8 N N1 BEN . . . B 2 25.001 6.193 29.209 0.7 15.53 ? N1 BEN 201 A 1 HETATM 9 N N2 BEN . . . B 2 25.206 8.239 30.319 0.7 19.27 ? N2 BEN 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #