data_4XNK # _model_server_result.job_id NwbEfe0pIjd-SJg_itEsvA _model_server_result.datetime_utc '2024-11-27 08:05:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4XNK # _exptl.entry_id 4XNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNK _cell.length_a 48.01 _cell.length_b 74.34 _cell.length_c 184.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc11 A O ASN 265 A ASN 265 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc12 A OG SER 304 A SER 304 1_555 H CA CA . A CA 507 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc13 A OE1 GLU 322 A GLU 322 1_555 J NA NA . A NA 509 4_457 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 325 n n C48 H481 PE5 sing 326 n n C48 H482 PE5 sing 327 n n C48 H483 PE5 sing 328 n n C50 O1 PE5 sing 329 n n C50 H501 PE5 sing 330 n n C50 H502 PE5 sing 331 n n O1 C1 PE5 sing 332 n n C1 C2 PE5 sing 333 n n C1 H11 PE5 sing 334 n n C1 H12 PE5 sing 335 n n C2 O2 PE5 sing 336 n n C2 H21 PE5 sing 337 n n C2 H22 PE5 sing 338 n n O2 C3 PE5 sing 339 n n C3 C4 PE5 sing 340 n n C3 H31 PE5 sing 341 n n C3 H32 PE5 sing 342 n n C4 O3 PE5 sing 343 n n C4 H41 PE5 sing 344 n n C4 H42 PE5 sing 345 n n O3 C5 PE5 sing 346 n n C5 C6 PE5 sing 347 n n C5 H51 PE5 sing 348 n n C5 H52A PE5 sing 349 n n C6 O4 PE5 sing 350 n n C6 H61 PE5 sing 351 n n C6 H62 PE5 sing 352 n n O4 C7 PE5 sing 353 n n C7 C8 PE5 sing 354 n n C7 H71 PE5 sing 355 n n C7 H72 PE5 sing 356 n n C8 O5 PE5 sing 357 n n C8 H81 PE5 sing 358 n n C8 H82 PE5 sing 359 n n O5 C9 PE5 sing 360 n n C9 C10 PE5 sing 361 n n C9 H91 PE5 sing 362 n n C9 H92 PE5 sing 363 n n C10 O6 PE5 sing 364 n n C10 H101 PE5 sing 365 n n C10 H102 PE5 sing 366 n n O6 C11 PE5 sing 367 n n C11 C12 PE5 sing 368 n n C11 H111 PE5 sing 369 n n C11 H112 PE5 sing 370 n n C12 O7 PE5 sing 371 n n C12 H121 PE5 sing 372 n n C12 H122 PE5 sing 373 n n O7 C13 PE5 sing 374 n n C13 C14 PE5 sing 375 n n C13 H131 PE5 sing 376 n n C13 H132 PE5 sing 377 n n C14 O8 PE5 sing 378 n n C14 H141 PE5 sing 379 n n C14 H142 PE5 sing 380 n n O8 C15 PE5 sing 381 n n C15 C16 PE5 sing 382 n n C15 H151 PE5 sing 383 n n C15 H152 PE5 sing 384 n n C16 O52 PE5 sing 385 n n C16 H161 PE5 sing 386 n n C16 H162 PE5 sing 387 n n O52 H52 PE5 sing 388 n n # _atom_sites.entry_id 4XNK _atom_sites.fract_transf_matrix[1][1] 0.020829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 501 1492 LDA LDA . C 2 LDA A 1 502 1496 LDA LDA . D 3 PE5 A 1 503 1517 PE5 PE5 . E 4 78M A 1 504 1510 78M 78M . F 2 LDA A 1 505 1493 LDA LDA . G 2 LDA A 1 506 1494 LDA LDA . H 5 CA A 1 507 1 CA CA . I 6 NA A 1 508 2 NA NA . J 6 NA A 1 509 3 NA NA . K 7 HOH A 1 601 63 HOH HOH . K 7 HOH A 2 602 34 HOH HOH . K 7 HOH A 3 603 113 HOH HOH . K 7 HOH A 4 604 26 HOH HOH . K 7 HOH A 5 605 27 HOH HOH . K 7 HOH A 6 606 28 HOH HOH . K 7 HOH A 7 607 31 HOH HOH . K 7 HOH A 8 608 43 HOH HOH . K 7 HOH A 9 609 47 HOH HOH . K 7 HOH A 10 610 48 HOH HOH . K 7 HOH A 11 611 51 HOH HOH . K 7 HOH A 12 612 55 HOH HOH . K 7 HOH A 13 613 62 HOH HOH . K 7 HOH A 14 614 83 HOH HOH . K 7 HOH A 15 615 89 HOH HOH . K 7 HOH A 16 616 103 HOH HOH . K 7 HOH A 17 617 107 HOH HOH . K 7 HOH A 18 618 108 HOH HOH . K 7 HOH A 19 619 109 HOH HOH . K 7 HOH A 20 620 111 HOH HOH . K 7 HOH A 21 621 117 HOH HOH . K 7 HOH A 22 622 120 HOH HOH . K 7 HOH A 23 623 122 HOH HOH . K 7 HOH A 24 624 123 HOH HOH . K 7 HOH A 25 625 125 HOH HOH . K 7 HOH A 26 626 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE5 . . . D 3 -11.097 11.357 209.503 1 69.3 ? O1 PE5 503 A 1 HETATM 2 C C1 PE5 . . . D 3 -10.297 12.536 209.639 1 70.09 ? C1 PE5 503 A 1 HETATM 3 C C2 PE5 . . . D 3 -8.86 12.16 209.392 1 69.77 ? C2 PE5 503 A 1 HETATM 4 O O2 PE5 . . . D 3 -8.224 12.064 210.639 1 70.03 ? O2 PE5 503 A 1 HETATM 5 C C3 PE5 . . . D 3 -7.275 11.015 210.728 1 69.73 ? C3 PE5 503 A 1 HETATM 6 C C4 PE5 . . . D 3 -6.248 11.452 211.743 1 69.45 ? C4 PE5 503 A 1 HETATM 7 O O3 PE5 . . . D 3 -5.311 10.432 211.917 1 70.62 ? O3 PE5 503 A 1 HETATM 8 C C5 PE5 . . . D 3 -4.012 10.8 211.511 1 70.29 ? C5 PE5 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #