data_4XNK # _model_server_result.job_id xaU9xrx6aGIoHG8yveSHqw _model_server_result.datetime_utc '2024-11-27 08:04:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4XNK # _exptl.entry_id 4XNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNK _cell.length_a 48.01 _cell.length_b 74.34 _cell.length_c 184.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc11 A O ASN 265 A ASN 265 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc12 A OG SER 304 A SER 304 1_555 H CA CA . A CA 507 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc13 A OE1 GLU 322 A GLU 322 1_555 J NA NA . A NA 509 4_457 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 4XNK _atom_sites.fract_transf_matrix[1][1] 0.020829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 501 1492 LDA LDA . C 2 LDA A 1 502 1496 LDA LDA . D 3 PE5 A 1 503 1517 PE5 PE5 . E 4 78M A 1 504 1510 78M 78M . F 2 LDA A 1 505 1493 LDA LDA . G 2 LDA A 1 506 1494 LDA LDA . H 5 CA A 1 507 1 CA CA . I 6 NA A 1 508 2 NA NA . J 6 NA A 1 509 3 NA NA . K 7 HOH A 1 601 63 HOH HOH . K 7 HOH A 2 602 34 HOH HOH . K 7 HOH A 3 603 113 HOH HOH . K 7 HOH A 4 604 26 HOH HOH . K 7 HOH A 5 605 27 HOH HOH . K 7 HOH A 6 606 28 HOH HOH . K 7 HOH A 7 607 31 HOH HOH . K 7 HOH A 8 608 43 HOH HOH . K 7 HOH A 9 609 47 HOH HOH . K 7 HOH A 10 610 48 HOH HOH . K 7 HOH A 11 611 51 HOH HOH . K 7 HOH A 12 612 55 HOH HOH . K 7 HOH A 13 613 62 HOH HOH . K 7 HOH A 14 614 83 HOH HOH . K 7 HOH A 15 615 89 HOH HOH . K 7 HOH A 16 616 103 HOH HOH . K 7 HOH A 17 617 107 HOH HOH . K 7 HOH A 18 618 108 HOH HOH . K 7 HOH A 19 619 109 HOH HOH . K 7 HOH A 20 620 111 HOH HOH . K 7 HOH A 21 621 117 HOH HOH . K 7 HOH A 22 622 120 HOH HOH . K 7 HOH A 23 623 122 HOH HOH . K 7 HOH A 24 624 123 HOH HOH . K 7 HOH A 25 625 125 HOH HOH . K 7 HOH A 26 626 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . E 4 25.158 17.739 188.974 1 80.22 ? O21 78M 504 A 1 HETATM 2 C C20 78M . . . E 4 26.541 17.888 189.187 1 79.42 ? C20 78M 504 A 1 HETATM 3 C C18 78M . . . E 4 26.763 18.114 190.659 1 78.88 ? C18 78M 504 A 1 HETATM 4 O O19 78M . . . E 4 27.493 19.312 190.857 1 78.78 ? O19 78M 504 A 1 HETATM 5 C C17 78M . . . E 4 27.538 16.941 191.231 1 78.56 ? C17 78M 504 A 1 HETATM 6 O O2 78M . . . E 4 26.656 16.233 192.103 1 77.79 ? O2 78M 504 A 1 HETATM 7 C C1 78M . . . E 4 27.17 15.992 193.407 1 76.61 ? C1 78M 504 A 1 HETATM 8 O O1 78M . . . E 4 27.615 14.894 193.683 1 78.18 ? O1 78M 504 A 1 HETATM 9 C C2 78M . . . E 4 27.158 17.094 194.47 1 73.51 ? C2 78M 504 A 1 HETATM 10 C C3 78M . . . E 4 25.793 17.744 194.637 1 70.66 ? C3 78M 504 A 1 HETATM 11 C C4 78M . . . E 4 24.884 16.957 195.564 1 68.1 ? C4 78M 504 A 1 HETATM 12 C C5 78M . . . E 4 23.804 17.829 196.193 1 65.15 ? C5 78M 504 A 1 HETATM 13 C C6 78M . . . E 4 23.04 17.092 197.293 1 61.56 ? C6 78M 504 A 1 HETATM 14 C C7 78M . . . E 4 23.667 17.315 198.677 1 58.89 ? C7 78M 504 A 1 HETATM 15 C C8 78M . . . E 4 23.57 16.395 199.677 1 57.16 ? C8 78M 504 A 1 HETATM 16 C C9 78M . . . E 4 22.839 15.077 199.509 1 55.56 ? C9 78M 504 A 1 HETATM 17 C C10 78M . . . E 4 23.223 14.071 200.588 1 53.53 ? C10 78M 504 A 1 HETATM 18 C C11 78M . . . E 4 22.175 12.965 200.755 1 52.07 ? C11 78M 504 A 1 HETATM 19 C C12 78M . . . E 4 22.11 12.461 202.185 1 51.71 ? C12 78M 504 A 1 HETATM 20 C C13 78M . . . E 4 21.913 10.959 202.256 1 50.4 ? C13 78M 504 A 1 HETATM 21 C C15 78M . . . E 4 20.522 9.103 203.173 1 47.21 ? C15 78M 504 A 1 HETATM 22 C C14 78M . . . E 4 20.933 10.548 203.325 1 48.46 ? C14 78M 504 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #