data_4XNK # _model_server_result.job_id 9qzpUgXv2aXGvbpGi_Eblw _model_server_result.datetime_utc '2024-11-23 16:02:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4XNK # _exptl.entry_id 4XNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNK _cell.length_a 48.01 _cell.length_b 74.34 _cell.length_c 184.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc11 A O ASN 265 A ASN 265 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc12 A OG SER 304 A SER 304 1_555 H CA CA . A CA 507 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc13 A OE1 GLU 322 A GLU 322 1_555 J NA NA . A NA 509 4_457 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 215 n n N1 CM1 LDA sing 216 n n N1 CM2 LDA sing 217 n n N1 C1 LDA sing 218 n n CM1 HM11 LDA sing 219 n n CM1 HM12 LDA sing 220 n n CM1 HM13 LDA sing 221 n n CM2 HM21 LDA sing 222 n n CM2 HM22 LDA sing 223 n n CM2 HM23 LDA sing 224 n n C1 C2 LDA sing 225 n n C1 H11 LDA sing 226 n n C1 H12 LDA sing 227 n n C2 C3 LDA sing 228 n n C2 H21 LDA sing 229 n n C2 H22 LDA sing 230 n n C3 C4 LDA sing 231 n n C3 H31 LDA sing 232 n n C3 H32 LDA sing 233 n n C4 C5 LDA sing 234 n n C4 H41 LDA sing 235 n n C4 H42 LDA sing 236 n n C5 C6 LDA sing 237 n n C5 H51 LDA sing 238 n n C5 H52 LDA sing 239 n n C6 C7 LDA sing 240 n n C6 H61 LDA sing 241 n n C6 H62 LDA sing 242 n n C7 C8 LDA sing 243 n n C7 H71 LDA sing 244 n n C7 H72 LDA sing 245 n n C8 C9 LDA sing 246 n n C8 H81 LDA sing 247 n n C8 H82 LDA sing 248 n n C9 C10 LDA sing 249 n n C9 H91 LDA sing 250 n n C9 H92 LDA sing 251 n n C10 C11 LDA sing 252 n n C10 H101 LDA sing 253 n n C10 H102 LDA sing 254 n n C11 C12 LDA sing 255 n n C11 H111 LDA sing 256 n n C11 H112 LDA sing 257 n n C12 H121 LDA sing 258 n n C12 H122 LDA sing 259 n n C12 H123 LDA sing 260 n n # _atom_sites.entry_id 4XNK _atom_sites.fract_transf_matrix[1][1] 0.020829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 501 1492 LDA LDA . C 2 LDA A 1 502 1496 LDA LDA . D 3 PE5 A 1 503 1517 PE5 PE5 . E 4 78M A 1 504 1510 78M 78M . F 2 LDA A 1 505 1493 LDA LDA . G 2 LDA A 1 506 1494 LDA LDA . H 5 CA A 1 507 1 CA CA . I 6 NA A 1 508 2 NA NA . J 6 NA A 1 509 3 NA NA . K 7 HOH A 1 601 63 HOH HOH . K 7 HOH A 2 602 34 HOH HOH . K 7 HOH A 3 603 113 HOH HOH . K 7 HOH A 4 604 26 HOH HOH . K 7 HOH A 5 605 27 HOH HOH . K 7 HOH A 6 606 28 HOH HOH . K 7 HOH A 7 607 31 HOH HOH . K 7 HOH A 8 608 43 HOH HOH . K 7 HOH A 9 609 47 HOH HOH . K 7 HOH A 10 610 48 HOH HOH . K 7 HOH A 11 611 51 HOH HOH . K 7 HOH A 12 612 55 HOH HOH . K 7 HOH A 13 613 62 HOH HOH . K 7 HOH A 14 614 83 HOH HOH . K 7 HOH A 15 615 89 HOH HOH . K 7 HOH A 16 616 103 HOH HOH . K 7 HOH A 17 617 107 HOH HOH . K 7 HOH A 18 618 108 HOH HOH . K 7 HOH A 19 619 109 HOH HOH . K 7 HOH A 20 620 111 HOH HOH . K 7 HOH A 21 621 117 HOH HOH . K 7 HOH A 22 622 120 HOH HOH . K 7 HOH A 23 623 122 HOH HOH . K 7 HOH A 24 624 123 HOH HOH . K 7 HOH A 25 625 125 HOH HOH . K 7 HOH A 26 626 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 2 0.012 44.11 220.808 1 111.66 ? N1 LDA 505 A 1 HETATM 2 O O1 LDA . . . F 2 -0.675 43.291 221.385 1 111.53 ? O1 LDA 505 A 1 HETATM 3 C CM1 LDA . . . F 2 -0.65 45.37 220.782 1 111.83 ? CM1 LDA 505 A 1 HETATM 4 C CM2 LDA . . . F 2 1.284 44.259 221.463 1 112.49 ? CM2 LDA 505 A 1 HETATM 5 C C1 LDA . . . F 2 0.248 43.68 219.455 1 110.37 ? C1 LDA 505 A 1 HETATM 6 C C2 LDA . . . F 2 0.463 44.751 218.348 1 108.57 ? C2 LDA 505 A 1 HETATM 7 C C3 LDA . . . F 2 -0.255 44.379 217.027 1 106.93 ? C3 LDA 505 A 1 HETATM 8 C C4 LDA . . . F 2 -1.758 44.66 217.082 1 104.85 ? C4 LDA 505 A 1 HETATM 9 C C5 LDA . . . F 2 -2.578 43.429 216.583 1 102.87 ? C5 LDA 505 A 1 HETATM 10 C C6 LDA . . . F 2 -3.758 43.894 215.712 1 102.03 ? C6 LDA 505 A 1 HETATM 11 C C7 LDA . . . F 2 -4.058 42.928 214.508 1 100.99 ? C7 LDA 505 A 1 HETATM 12 C C8 LDA . . . F 2 -3.496 43.441 213.201 1 99.85 ? C8 LDA 505 A 1 HETATM 13 C C9 LDA . . . F 2 -4.438 44.37 212.429 1 98.4 ? C9 LDA 505 A 1 HETATM 14 C C10 LDA . . . F 2 -5.043 43.7 211.208 1 97.05 ? C10 LDA 505 A 1 HETATM 15 C C11 LDA . . . F 2 -6.193 44.564 210.555 1 96.18 ? C11 LDA 505 A 1 HETATM 16 C C12 LDA . . . F 2 -6.502 44.099 209.098 1 95.75 ? C12 LDA 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #