data_4XNL # _model_server_result.job_id zHooNFirQNKVUuLRLqvvTQ _model_server_result.datetime_utc '2025-02-28 22:03:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 4XNL # _exptl.entry_id 4XNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNL _cell.length_a 47.38 _cell.length_b 73.122 _cell.length_c 184.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 56 n n C19 C18 78N sing 57 n n C18 O20 78N sing 58 n n C18 C17 78N sing 59 n n C17 O16 78N sing 60 n n O16 C8 78N sing 61 n n C8 O15 78N doub 62 n n C8 C7 78N sing 63 n n C7 C6 78N sing 64 n n C6 C5 78N sing 65 n n C5 C4 78N sing 66 n n C4 C3 78N sing 67 n n C3 C2 78N sing 68 n n C2 C1 78N doub 69 z n C1 C9 78N sing 70 n n C9 C10 78N sing 71 n n C10 C11 78N sing 72 n n C11 C12 78N sing 73 n n C12 C13 78N sing 74 n n C13 C14 78N sing 75 n n C15 C14 78N sing 76 n n O22 H22 78N sing 77 n n C19 H191 78N sing 78 n n C19 H192 78N sing 79 n n C18 H18 78N sing 80 n n O20 H20 78N sing 81 n n C17 H171 78N sing 82 n n C17 H172 78N sing 83 n n C7 H71 78N sing 84 n n C7 H72 78N sing 85 n n C6 H61C 78N sing 86 n n C6 H62C 78N sing 87 n n C5 H51C 78N sing 88 n n C5 H52C 78N sing 89 n n C4 H41C 78N sing 90 n n C4 H42C 78N sing 91 n n C3 H31C 78N sing 92 n n C3 H32C 78N sing 93 n n C2 H2 78N sing 94 n n C1 H1 78N sing 95 n n C9 H91C 78N sing 96 n n C9 H92C 78N sing 97 n n C10 H101 78N sing 98 n n C10 H102 78N sing 99 n n C11 H111 78N sing 100 n n C11 H112 78N sing 101 n n C12 H121 78N sing 102 n n C12 H122 78N sing 103 n n C13 H131 78N sing 104 n n C13 H132 78N sing 105 n n C14 H141 78N sing 106 n n C14 H142 78N sing 107 n n C15 H151 78N sing 108 n n C15 H152 78N sing 109 n n C15 H153 78N sing 110 n n # _atom_sites.entry_id 4XNL _atom_sites.fract_transf_matrix[1][1] 0.021106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 501 1492 LDA LDA . C 2 LDA A 1 502 1493 LDA LDA . D 2 LDA A 1 503 1495 LDA LDA . E 2 LDA A 1 504 1496 LDA LDA . F 2 LDA A 1 505 1504 LDA LDA . G 2 LDA A 1 506 1506 LDA LDA . H 3 78M A 1 507 1510 78M 78M . I 3 78M A 1 508 1512 78M 78M . J 4 78N A 1 509 1514 78N 78N . K 3 78M A 1 510 1515 78M 78M . L 5 PE5 A 1 511 1517 PE5 PE5 . M 3 78M A 1 512 1511 78M 78M . N 2 LDA A 1 513 1490 LDA LDA . O 2 LDA A 1 514 1491 LDA LDA . P 6 CA A 1 515 1 CA CA . Q 7 HOH A 1 601 132 HOH HOH . Q 7 HOH A 2 602 6 HOH HOH . Q 7 HOH A 3 603 90 HOH HOH . Q 7 HOH A 4 604 133 HOH HOH . Q 7 HOH A 5 605 11 HOH HOH . Q 7 HOH A 6 606 12 HOH HOH . Q 7 HOH A 7 607 14 HOH HOH . Q 7 HOH A 8 608 27 HOH HOH . Q 7 HOH A 9 609 39 HOH HOH . Q 7 HOH A 10 610 40 HOH HOH . Q 7 HOH A 11 611 52 HOH HOH . Q 7 HOH A 12 612 56 HOH HOH . Q 7 HOH A 13 613 63 HOH HOH . Q 7 HOH A 14 614 68 HOH HOH . Q 7 HOH A 15 615 78 HOH HOH . Q 7 HOH A 16 616 109 HOH HOH . Q 7 HOH A 17 617 111 HOH HOH . Q 7 HOH A 18 618 112 HOH HOH . Q 7 HOH A 19 619 113 HOH HOH . Q 7 HOH A 20 620 123 HOH HOH . Q 7 HOH A 21 621 126 HOH HOH . Q 7 HOH A 22 622 127 HOH HOH . Q 7 HOH A 23 623 129 HOH HOH . Q 7 HOH A 24 624 130 HOH HOH . Q 7 HOH A 25 625 131 HOH HOH . Q 7 HOH A 26 626 139 HOH HOH . Q 7 HOH A 27 627 140 HOH HOH . Q 7 HOH A 28 628 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . J 4 3.929 9.495 -4.377 1 77.08 ? O22 78N 509 A 1 HETATM 2 C C19 78N . . . J 4 5.011 8.575 -4.126 1 77.35 ? C19 78N 509 A 1 HETATM 3 C C18 78N . . . J 4 6.273 9.339 -3.726 1 77.23 ? C18 78N 509 A 1 HETATM 4 O O20 78N . . . J 4 7.172 8.481 -3.13 1 77.29 ? O20 78N 509 A 1 HETATM 5 C C17 78N . . . J 4 6.874 10.07 -4.929 1 76.28 ? C17 78N 509 A 1 HETATM 6 O O16 78N . . . J 4 8.091 9.445 -5.408 1 75.27 ? O16 78N 509 A 1 HETATM 7 C C8 78N . . . J 4 7.961 8.45 -6.47 1 73.38 ? C8 78N 509 A 1 HETATM 8 O O15 78N . . . J 4 8.399 7.332 -6.29 1 73.07 ? O15 78N 509 A 1 HETATM 9 C C7 78N . . . J 4 7.292 8.799 -7.83 1 71.06 ? C7 78N 509 A 1 HETATM 10 C C6 78N . . . J 4 8.295 8.908 -9.002 1 68.78 ? C6 78N 509 A 1 HETATM 11 C C5 78N . . . J 4 8.471 7.571 -9.718 1 66.85 ? C5 78N 509 A 1 HETATM 12 C C4 78N . . . J 4 8.523 7.725 -11.25 1 65.39 ? C4 78N 509 A 1 HETATM 13 C C3 78N . . . J 4 7.203 7.333 -11.91 1 63.99 ? C3 78N 509 A 1 HETATM 14 C C2 78N . . . J 4 6.365 8.554 -12.32 1 62.25 ? C2 78N 509 A 1 HETATM 15 C C1 78N . . . J 4 5.03 8.486 -12.729 1 60.03 ? C1 78N 509 A 1 HETATM 16 C C9 78N . . . J 4 4.228 7.187 -12.822 1 57.33 ? C9 78N 509 A 1 HETATM 17 C C10 78N . . . J 4 2.973 7.319 -13.699 1 54.43 ? C10 78N 509 A 1 HETATM 18 C C11 78N . . . J 4 2.658 6.036 -14.492 1 51.6 ? C11 78N 509 A 1 HETATM 19 C C12 78N . . . J 4 2.975 6.198 -16.013 1 50.05 ? C12 78N 509 A 1 HETATM 20 C C13 78N . . . J 4 1.763 5.875 -16.929 1 49.14 ? C13 78N 509 A 1 HETATM 21 C C15 78N . . . J 4 1.227 7.387 -18.895 1 48.61 ? C15 78N 509 A 1 HETATM 22 C C14 78N . . . J 4 1.032 7.139 -17.415 1 48.72 ? C14 78N 509 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #