data_4XNL
#
_model_server_result.job_id            5WPRFolXR6ZaGXMcpdlaWQ 
_model_server_result.datetime_utc      '2025-02-28 21:39:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":511}' 
#
_entry.id    4XNL 
#
_exptl.entry_id    4XNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XNL 
_cell.length_a            47.38 
_cell.length_b            73.122 
_cell.length_c            184.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 380 n n 
C48 H481 PE5 sing 381 n n 
C48 H482 PE5 sing 382 n n 
C48 H483 PE5 sing 383 n n 
C50 O1 PE5 sing 384 n n 
C50 H501 PE5 sing 385 n n 
C50 H502 PE5 sing 386 n n 
O1 C1 PE5 sing 387 n n 
C1 C2 PE5 sing 388 n n 
C1 H11 PE5 sing 389 n n 
C1 H12 PE5 sing 390 n n 
C2 O2 PE5 sing 391 n n 
C2 H21 PE5 sing 392 n n 
C2 H22 PE5 sing 393 n n 
O2 C3 PE5 sing 394 n n 
C3 C4 PE5 sing 395 n n 
C3 H31 PE5 sing 396 n n 
C3 H32 PE5 sing 397 n n 
C4 O3 PE5 sing 398 n n 
C4 H41 PE5 sing 399 n n 
C4 H42 PE5 sing 400 n n 
O3 C5 PE5 sing 401 n n 
C5 C6 PE5 sing 402 n n 
C5 H51 PE5 sing 403 n n 
C5 H52A PE5 sing 404 n n 
C6 O4 PE5 sing 405 n n 
C6 H61 PE5 sing 406 n n 
C6 H62 PE5 sing 407 n n 
O4 C7 PE5 sing 408 n n 
C7 C8 PE5 sing 409 n n 
C7 H71 PE5 sing 410 n n 
C7 H72 PE5 sing 411 n n 
C8 O5 PE5 sing 412 n n 
C8 H81 PE5 sing 413 n n 
C8 H82 PE5 sing 414 n n 
O5 C9 PE5 sing 415 n n 
C9 C10 PE5 sing 416 n n 
C9 H91 PE5 sing 417 n n 
C9 H92 PE5 sing 418 n n 
C10 O6 PE5 sing 419 n n 
C10 H101 PE5 sing 420 n n 
C10 H102 PE5 sing 421 n n 
O6 C11 PE5 sing 422 n n 
C11 C12 PE5 sing 423 n n 
C11 H111 PE5 sing 424 n n 
C11 H112 PE5 sing 425 n n 
C12 O7 PE5 sing 426 n n 
C12 H121 PE5 sing 427 n n 
C12 H122 PE5 sing 428 n n 
O7 C13 PE5 sing 429 n n 
C13 C14 PE5 sing 430 n n 
C13 H131 PE5 sing 431 n n 
C13 H132 PE5 sing 432 n n 
C14 O8 PE5 sing 433 n n 
C14 H141 PE5 sing 434 n n 
C14 H142 PE5 sing 435 n n 
O8 C15 PE5 sing 436 n n 
C15 C16 PE5 sing 437 n n 
C15 H151 PE5 sing 438 n n 
C15 H152 PE5 sing 439 n n 
C16 O52 PE5 sing 440 n n 
C16 H161 PE5 sing 441 n n 
C16 H162 PE5 sing 442 n n 
O52 H52 PE5 sing 443 n n 
#
_atom_sites.entry_id                     4XNL 
_atom_sites.fract_transf_matrix[1][1]    0.021106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1492 LDA LDA . 
C 2 LDA A 1 502 1493 LDA LDA . 
D 2 LDA A 1 503 1495 LDA LDA . 
E 2 LDA A 1 504 1496 LDA LDA . 
F 2 LDA A 1 505 1504 LDA LDA . 
G 2 LDA A 1 506 1506 LDA LDA . 
H 3 78M A 1 507 1510 78M 78M . 
I 3 78M A 1 508 1512 78M 78M . 
J 4 78N A 1 509 1514 78N 78N . 
K 3 78M A 1 510 1515 78M 78M . 
L 5 PE5 A 1 511 1517 PE5 PE5 . 
M 3 78M A 1 512 1511 78M 78M . 
N 2 LDA A 1 513 1490 LDA LDA . 
O 2 LDA A 1 514 1491 LDA LDA . 
P 6 CA A 1 515 1 CA CA . 
Q 7 HOH A 1 601 132 HOH HOH . 
Q 7 HOH A 2 602 6 HOH HOH . 
Q 7 HOH A 3 603 90 HOH HOH . 
Q 7 HOH A 4 604 133 HOH HOH . 
Q 7 HOH A 5 605 11 HOH HOH . 
Q 7 HOH A 6 606 12 HOH HOH . 
Q 7 HOH A 7 607 14 HOH HOH . 
Q 7 HOH A 8 608 27 HOH HOH . 
Q 7 HOH A 9 609 39 HOH HOH . 
Q 7 HOH A 10 610 40 HOH HOH . 
Q 7 HOH A 11 611 52 HOH HOH . 
Q 7 HOH A 12 612 56 HOH HOH . 
Q 7 HOH A 13 613 63 HOH HOH . 
Q 7 HOH A 14 614 68 HOH HOH . 
Q 7 HOH A 15 615 78 HOH HOH . 
Q 7 HOH A 16 616 109 HOH HOH . 
Q 7 HOH A 17 617 111 HOH HOH . 
Q 7 HOH A 18 618 112 HOH HOH . 
Q 7 HOH A 19 619 113 HOH HOH . 
Q 7 HOH A 20 620 123 HOH HOH . 
Q 7 HOH A 21 621 126 HOH HOH . 
Q 7 HOH A 22 622 127 HOH HOH . 
Q 7 HOH A 23 623 129 HOH HOH . 
Q 7 HOH A 24 624 130 HOH HOH . 
Q 7 HOH A 25 625 131 HOH HOH . 
Q 7 HOH A 26 626 139 HOH HOH . 
Q 7 HOH A 27 627 140 HOH HOH . 
Q 7 HOH A 28 628 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PE5 . . . L 5 12.377 -23.529 -24.63 1 45.6 ? O1 PE5 511 A 1 
HETATM 2 C C1 PE5 . . . L 5 11.903 -22.51 -25.517 1 45.59 ? C1 PE5 511 A 1 
HETATM 3 C C2 PE5 . . . L 5 10.422 -22.327 -25.292 1 45.68 ? C2 PE5 511 A 1 
HETATM 4 O O2 PE5 . . . L 5 9.735 -23.292 -26.05 1 44.61 ? O2 PE5 511 A 1 
HETATM 5 C C3 PE5 . . . L 5 8.663 -22.759 -26.814 1 44.68 ? C3 PE5 511 A 1 
HETATM 6 C C4 PE5 . . . L 5 7.728 -23.887 -27.173 1 45.7 ? C4 PE5 511 A 1 
HETATM 7 O O3 PE5 . . . L 5 6.443 -23.53 -26.757 1 45.53 ? O3 PE5 511 A 1 
HETATM 8 C C5 PE5 . . . L 5 5.417 -24.123 -27.514 1 44.45 ? C5 PE5 511 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#