data_4XNL
#
_model_server_result.job_id            K_J_r4c69DKe8EQYemh7ng 
_model_server_result.datetime_utc      '2024-11-27 07:27:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    4XNL 
#
_exptl.entry_id    4XNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XNL 
_cell.length_a            47.38 
_cell.length_b            73.122 
_cell.length_c            184.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     4XNL 
_atom_sites.fract_transf_matrix[1][1]    0.021106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1492 LDA LDA . 
C 2 LDA A 1 502 1493 LDA LDA . 
D 2 LDA A 1 503 1495 LDA LDA . 
E 2 LDA A 1 504 1496 LDA LDA . 
F 2 LDA A 1 505 1504 LDA LDA . 
G 2 LDA A 1 506 1506 LDA LDA . 
H 3 78M A 1 507 1510 78M 78M . 
I 3 78M A 1 508 1512 78M 78M . 
J 4 78N A 1 509 1514 78N 78N . 
K 3 78M A 1 510 1515 78M 78M . 
L 5 PE5 A 1 511 1517 PE5 PE5 . 
M 3 78M A 1 512 1511 78M 78M . 
N 2 LDA A 1 513 1490 LDA LDA . 
O 2 LDA A 1 514 1491 LDA LDA . 
P 6 CA A 1 515 1 CA CA . 
Q 7 HOH A 1 601 132 HOH HOH . 
Q 7 HOH A 2 602 6 HOH HOH . 
Q 7 HOH A 3 603 90 HOH HOH . 
Q 7 HOH A 4 604 133 HOH HOH . 
Q 7 HOH A 5 605 11 HOH HOH . 
Q 7 HOH A 6 606 12 HOH HOH . 
Q 7 HOH A 7 607 14 HOH HOH . 
Q 7 HOH A 8 608 27 HOH HOH . 
Q 7 HOH A 9 609 39 HOH HOH . 
Q 7 HOH A 10 610 40 HOH HOH . 
Q 7 HOH A 11 611 52 HOH HOH . 
Q 7 HOH A 12 612 56 HOH HOH . 
Q 7 HOH A 13 613 63 HOH HOH . 
Q 7 HOH A 14 614 68 HOH HOH . 
Q 7 HOH A 15 615 78 HOH HOH . 
Q 7 HOH A 16 616 109 HOH HOH . 
Q 7 HOH A 17 617 111 HOH HOH . 
Q 7 HOH A 18 618 112 HOH HOH . 
Q 7 HOH A 19 619 113 HOH HOH . 
Q 7 HOH A 20 620 123 HOH HOH . 
Q 7 HOH A 21 621 126 HOH HOH . 
Q 7 HOH A 22 622 127 HOH HOH . 
Q 7 HOH A 23 623 129 HOH HOH . 
Q 7 HOH A 24 624 130 HOH HOH . 
Q 7 HOH A 25 625 131 HOH HOH . 
Q 7 HOH A 26 626 139 HOH HOH . 
Q 7 HOH A 27 627 140 HOH HOH . 
Q 7 HOH A 28 628 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . M 3 21.054 -25.118 -2.546 1 66.06 ? O21 78M 512 A 1 
HETATM 2 C C20 78M . . . M 3 21.281 -25.549 -3.867 1 65.92 ? C20 78M 512 A 1 
HETATM 3 C C18 78M . . . M 3 21.177 -24.352 -4.775 1 65.97 ? C18 78M 512 A 1 
HETATM 4 O O19 78M . . . M 3 19.832 -23.915 -4.816 1 67.12 ? O19 78M 512 A 1 
HETATM 5 C C17 78M . . . M 3 21.643 -24.712 -6.177 1 65.63 ? C17 78M 512 A 1 
HETATM 6 O O2 78M . . . M 3 21.561 -23.534 -6.985 1 66.9 ? O2 78M 512 A 1 
HETATM 7 C C1 78M . . . M 3 21.436 -23.755 -8.386 1 67.48 ? C1 78M 512 A 1 
HETATM 8 O O1 78M . . . M 3 20.404 -24.211 -8.845 1 69.06 ? O1 78M 512 A 1 
HETATM 9 C C2 78M . . . M 3 22.599 -23.403 -9.314 1 66.29 ? C2 78M 512 A 1 
HETATM 10 C C3 78M . . . M 3 22.251 -23.464 -10.794 1 65.91 ? C3 78M 512 A 1 
HETATM 11 C C4 78M . . . M 3 23.478 -23.277 -11.669 1 66.44 ? C4 78M 512 A 1 
HETATM 12 C C5 78M . . . M 3 23.155 -22.801 -13.085 1 66.92 ? C5 78M 512 A 1 
HETATM 13 C C6 78M . . . M 3 22.731 -23.918 -14.05 1 67.71 ? C6 78M 512 A 1 
HETATM 14 C C7 78M . . . M 3 23.736 -25.078 -14.155 1 68.01 ? C7 78M 512 A 1 
HETATM 15 C C8 78M . . . M 3 23.61 -26.016 -15.127 1 67.81 ? C8 78M 512 A 1 
HETATM 16 C C9 78M . . . M 3 24.609 -27.151 -15.207 1 67.63 ? C9 78M 512 A 1 
HETATM 17 C C10 78M . . . M 3 24.278 -28.156 -16.304 1 68.19 ? C10 78M 512 A 1 
HETATM 18 C C11 78M . . . M 3 25.475 -29.045 -16.667 1 68.68 ? C11 78M 512 A 1 
HETATM 19 C C12 78M . . . M 3 25.312 -29.701 -18.026 1 69.26 ? C12 78M 512 A 1 
HETATM 20 C C13 78M . . . M 3 26.097 -28.99 -19.113 1 70.07 ? C13 78M 512 A 1 
HETATM 21 C C15 78M . . . M 3 26.079 -28.107 -21.465 1 69.6 ? C15 78M 512 A 1 
HETATM 22 C C14 78M . . . M 3 25.27 -28.729 -20.349 1 70.32 ? C14 78M 512 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#