data_4XNL
#
_model_server_result.job_id            up5vlGoY6tSWF1IQT1URzQ 
_model_server_result.datetime_utc      '2024-11-27 07:10:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":514}' 
#
_entry.id    4XNL 
#
_exptl.entry_id    4XNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XNL 
_cell.length_a            47.38 
_cell.length_b            73.122 
_cell.length_c            184.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 N N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 270 n n 
N1 CM1 LDA sing 271 n n 
N1 CM2 LDA sing 272 n n 
N1 C1 LDA sing 273 n n 
CM1 HM11 LDA sing 274 n n 
CM1 HM12 LDA sing 275 n n 
CM1 HM13 LDA sing 276 n n 
CM2 HM21 LDA sing 277 n n 
CM2 HM22 LDA sing 278 n n 
CM2 HM23 LDA sing 279 n n 
C1 C2 LDA sing 280 n n 
C1 H11 LDA sing 281 n n 
C1 H12 LDA sing 282 n n 
C2 C3 LDA sing 283 n n 
C2 H21 LDA sing 284 n n 
C2 H22 LDA sing 285 n n 
C3 C4 LDA sing 286 n n 
C3 H31 LDA sing 287 n n 
C3 H32 LDA sing 288 n n 
C4 C5 LDA sing 289 n n 
C4 H41 LDA sing 290 n n 
C4 H42 LDA sing 291 n n 
C5 C6 LDA sing 292 n n 
C5 H51 LDA sing 293 n n 
C5 H52 LDA sing 294 n n 
C6 C7 LDA sing 295 n n 
C6 H61 LDA sing 296 n n 
C6 H62 LDA sing 297 n n 
C7 C8 LDA sing 298 n n 
C7 H71 LDA sing 299 n n 
C7 H72 LDA sing 300 n n 
C8 C9 LDA sing 301 n n 
C8 H81 LDA sing 302 n n 
C8 H82 LDA sing 303 n n 
C9 C10 LDA sing 304 n n 
C9 H91 LDA sing 305 n n 
C9 H92 LDA sing 306 n n 
C10 C11 LDA sing 307 n n 
C10 H101 LDA sing 308 n n 
C10 H102 LDA sing 309 n n 
C11 C12 LDA sing 310 n n 
C11 H111 LDA sing 311 n n 
C11 H112 LDA sing 312 n n 
C12 H121 LDA sing 313 n n 
C12 H122 LDA sing 314 n n 
C12 H123 LDA sing 315 n n 
#
_atom_sites.entry_id                     4XNL 
_atom_sites.fract_transf_matrix[1][1]    0.021106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1492 LDA LDA . 
C 2 LDA A 1 502 1493 LDA LDA . 
D 2 LDA A 1 503 1495 LDA LDA . 
E 2 LDA A 1 504 1496 LDA LDA . 
F 2 LDA A 1 505 1504 LDA LDA . 
G 2 LDA A 1 506 1506 LDA LDA . 
H 3 78M A 1 507 1510 78M 78M . 
I 3 78M A 1 508 1512 78M 78M . 
J 4 78N A 1 509 1514 78N 78N . 
K 3 78M A 1 510 1515 78M 78M . 
L 5 PE5 A 1 511 1517 PE5 PE5 . 
M 3 78M A 1 512 1511 78M 78M . 
N 2 LDA A 1 513 1490 LDA LDA . 
O 2 LDA A 1 514 1491 LDA LDA . 
P 6 CA A 1 515 1 CA CA . 
Q 7 HOH A 1 601 132 HOH HOH . 
Q 7 HOH A 2 602 6 HOH HOH . 
Q 7 HOH A 3 603 90 HOH HOH . 
Q 7 HOH A 4 604 133 HOH HOH . 
Q 7 HOH A 5 605 11 HOH HOH . 
Q 7 HOH A 6 606 12 HOH HOH . 
Q 7 HOH A 7 607 14 HOH HOH . 
Q 7 HOH A 8 608 27 HOH HOH . 
Q 7 HOH A 9 609 39 HOH HOH . 
Q 7 HOH A 10 610 40 HOH HOH . 
Q 7 HOH A 11 611 52 HOH HOH . 
Q 7 HOH A 12 612 56 HOH HOH . 
Q 7 HOH A 13 613 63 HOH HOH . 
Q 7 HOH A 14 614 68 HOH HOH . 
Q 7 HOH A 15 615 78 HOH HOH . 
Q 7 HOH A 16 616 109 HOH HOH . 
Q 7 HOH A 17 617 111 HOH HOH . 
Q 7 HOH A 18 618 112 HOH HOH . 
Q 7 HOH A 19 619 113 HOH HOH . 
Q 7 HOH A 20 620 123 HOH HOH . 
Q 7 HOH A 21 621 126 HOH HOH . 
Q 7 HOH A 22 622 127 HOH HOH . 
Q 7 HOH A 23 623 129 HOH HOH . 
Q 7 HOH A 24 624 130 HOH HOH . 
Q 7 HOH A 25 625 131 HOH HOH . 
Q 7 HOH A 26 626 139 HOH HOH . 
Q 7 HOH A 27 627 140 HOH HOH . 
Q 7 HOH A 28 628 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . O 2 -22.895 -4.132 -29.847 1 66.46 ? N1 LDA 514 A 1 
HETATM 2 O O1 LDA . . . O 2 -23.66 -3.772 -30.717 1 67.11 ? O1 LDA 514 A 1 
HETATM 3 C CM1 LDA . . . O 2 -23.245 -5.448 -29.413 1 66.77 ? CM1 LDA 514 A 1 
HETATM 4 C CM2 LDA . . . O 2 -21.58 -4.216 -30.414 1 67.09 ? CM2 LDA 514 A 1 
HETATM 5 C C1 LDA . . . O 2 -22.947 -3.174 -28.758 1 65.07 ? C1 LDA 514 A 1 
HETATM 6 C C2 LDA . . . O 2 -22.14 -3.452 -27.461 1 64.72 ? C2 LDA 514 A 1 
HETATM 7 C C3 LDA . . . O 2 -21.209 -2.28 -27.065 1 64.25 ? C3 LDA 514 A 1 
HETATM 8 C C4 LDA . . . O 2 -21.251 -1.998 -25.558 1 63.31 ? C4 LDA 514 A 1 
HETATM 9 C C5 LDA . . . O 2 -20.381 -0.762 -25.153 1 62.7 ? C5 LDA 514 A 1 
HETATM 10 C C6 LDA . . . O 2 -20.122 -0.681 -23.635 1 63.22 ? C6 LDA 514 A 1 
HETATM 11 C C7 LDA . . . O 2 -19.238 0.563 -23.251 1 63.09 ? C7 LDA 514 A 1 
HETATM 12 C C8 LDA . . . O 2 -20.032 1.642 -22.559 1 62.64 ? C8 LDA 514 A 1 
HETATM 13 C C9 LDA . . . O 2 -19.38 3.022 -22.669 1 62.6 ? C9 LDA 514 A 1 
HETATM 14 C C10 LDA . . . O 2 -20.227 4.021 -23.441 1 62.85 ? C10 LDA 514 A 1 
HETATM 15 C C11 LDA . . . O 2 -19.516 4.529 -24.76 1 62.43 ? C11 LDA 514 A 1 
HETATM 16 C C12 LDA . . . O 2 -18.865 5.938 -24.587 1 62.01 ? C12 LDA 514 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#